Guide to the Human Genome
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Name: LOC100292262 Sequence: fasta or formatted (235aa) NCBI GI: 239756562
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         35           4
 C cysteine            1.7          4           1
 D aspartate           0.9          2           1
 E glutamate           2.6          6           1
 F phenylalanine       0.0          0           0
 G glycine            15.3         36           5
 H histidine           2.1          5           1
 I isoleucine          0.4          1           1
 K lysine              7.2         17           2
 L leucine             8.1         19           4
 M methionine          0.9          2           1
 N asparagine          1.7          4           1
 P proline             9.4         22           2
 Q glutamine           6.0         14           1
 R arginine           15.7         37           3
 S serine              6.8         16           1
 T threonine           1.7          4           1
 V valine              3.0          7           2
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291835          0.519   PREDICTED: hypothetical protein XP_002346266 
LOC100292035          0.512   PREDICTED: hypothetical protein XP_002345623 
LOC100293129          0.506   PREDICTED: hypothetical protein 
LOC100287688          0.503   PREDICTED: hypothetical protein XP_002342270 
LOC100292383          0.499   PREDICTED: hypothetical protein 
LOC100290780          0.479   PREDICTED: hypothetical protein XP_002348295 
LOC100292062          0.472   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.472   PREDICTED: hypothetical protein XP_002347697 
LOC100292370          0.141   PREDICTED: hypothetical protein 
LOC100130128          0.060   PREDICTED: hypothetical protein 
LOC100130128          0.060   PREDICTED: hypothetical protein 
LOC100130128          0.060   PREDICTED: hypothetical protein 
SCAF1                 0.060   SR-related CTD-associated factor 1 
LOC100288496          0.055   PREDICTED: hypothetical protein XP_002342747 
LOC728650             0.055   PREDICTED: hypothetical protein 
SRRM2                 0.053   splicing coactivator subunit SRm300 
LOC728767             0.053   PREDICTED: hypothetical protein 
LOC728767             0.053   PREDICTED: hypothetical protein 
LOC728650             0.051   PREDICTED: hypothetical protein 
FLJ37078              0.046   hypothetical protein LOC222183 
LOC100293596          0.044   PREDICTED: similar to mucin 
LOC100291147          0.044   PREDICTED: hypothetical protein XP_002347883 
LOC643355             0.044   PREDICTED: hypothetical protein 
LOC100289560          0.044   PREDICTED: hypothetical protein XP_002344188 
LOC643355             0.044   PREDICTED: hypothetical protein 
CACNA1B               0.044   calcium channel, voltage-dependent, N type, alpha 1B ...
SFRS16                0.044   splicing factor, arginine/serine-rich 16 
LOC284988             0.044   PREDICTED: hypothetical protein 
DNMT3A                0.044   DNA cytosine methyltransferase 3 alpha isoform c [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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