Guide to the Human Genome
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Name: LOC100130128 Sequence: fasta or formatted (460aa) NCBI GI: 169167967
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {460aa} PREDICTED: hypothetical protein
alt prot {460aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         61           3
 C cysteine            0.9          4           1
 D aspartate           2.8         13           1
 E glutamate           4.3         20           1
 F phenylalanine       2.2         10           2
 G glycine            13.5         62           2
 H histidine           2.0          9           1
 I isoleucine          0.2          1           1
 K lysine              1.1          5           1
 L leucine             9.3         43           3
 M methionine          0.2          1           1
 N asparagine          1.3          6           1
 P proline            12.2         56           2
 Q glutamine           2.8         13           2
 R arginine           15.0         69           3
 S serine              9.8         45           2
 T threonine           4.3         20           2
 V valine              3.7         17           1
 W tryptophan          0.9          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130128          1.000   PREDICTED: hypothetical protein 
LOC100130128          0.998   PREDICTED: hypothetical protein 
COL2A1                0.046   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.046   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.044   collagen type III alpha 1 preproprotein 
COL1A1                0.043   alpha 1 type I collagen preproprotein 
FLJ37078              0.038   hypothetical protein LOC222183 
COL11A1               0.036   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.036   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.036   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL1A2                0.035   alpha 2 type I collagen 
COL5A1                0.034   alpha 1 type V collagen preproprotein 
COL5A2                0.033   alpha 2 type V collagen preproprotein 
COL22A1               0.033   collagen, type XXII, alpha 1 
COL7A1                0.033   alpha 1 type VII collagen precursor 
RAI1                  0.032   retinoic acid induced 1 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
COL11A2               0.031   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.031   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.031   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL17A1               0.031   alpha 1 type XVII collagen 
LOC100292262          0.030   PREDICTED: hypothetical protein 
COL8A2                0.030   collagen, type VIII, alpha 2 
AGAP2                 0.030   centaurin, gamma 1 isoform PIKE-L 
SRRM2                 0.030   splicing coactivator subunit SRm300 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
LOC100293055          0.029   PREDICTED: similar to COL22A1 protein 
LOC643355             0.029   PREDICTED: hypothetical protein 
FLJ22184              0.029   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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