Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FLJ22184 Sequence: fasta or formatted (816aa) NCBI GI: 239746149
Description:

PREDICTED: hypothetical protein LOC80164

Not currently referenced in the text

Other entries for this name:
alt prot {1124aa} PREDICTED: hypothetical protein FLJ22184
alt prot {855aa} PREDICTED: hypothetical protein FLJ22184
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4        134           3
 C cysteine            0.2          2           1
 D aspartate           1.8         15           2
 E glutamate           3.1         25           2
 F phenylalanine       1.0          8           1
 G glycine             9.3         76           3
 H histidine           1.0          8           1
 I isoleucine          0.6          5           1
 K lysine              1.8         15           1
 L leucine             8.7         71           3
 M methionine          0.5          4           1
 N asparagine          0.4          3           1
 P proline            23.2        189           5
 Q glutamine           3.3         27           1
 R arginine            6.1         50           3
 S serine             12.6        103           3
 T threonine           6.4         52           2
 V valine              2.8         23           2
 W tryptophan          0.5          4           1
 Y tyrosine            0.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.985   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.618   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.115   nascent polypeptide-associated complex alpha subuni...
MUC2                  0.084   mucin 2 precursor 
PRG4                  0.076   proteoglycan 4 isoform D 
PRG4                  0.076   proteoglycan 4 isoform C 
PRG4                  0.076   proteoglycan 4 isoform B 
PRG4                  0.076   proteoglycan 4 isoform A 
MLL2                  0.074   myeloid/lymphoid or mixed-lineage leukemia 2 
KIAA1522              0.072   hypothetical protein LOC57648 
RAPH1                 0.072   Ras association and pleckstrin homology domains 1 is...
GLTSCR1               0.071   glioma tumor suppressor candidate region gene 1 [Ho...
CIC                   0.070   capicua homolog 
TAF4                  0.069   TBP-associated factor 4 
WIPF3                 0.069   WAS/WASL interacting protein family, member 3 [Homo...
SRCAP                 0.069   Snf2-related CBP activator protein 
MBD6                  0.068   methyl-CpG binding domain protein 6 
KDM6B                 0.067   lysine (K)-specific demethylase 6B 
RERE                  0.067   atrophin-1 like protein isoform b 
RERE                  0.067   atrophin-1 like protein isoform a 
RERE                  0.067   atrophin-1 like protein isoform a 
WNK2                  0.066   WNK lysine deficient protein kinase 2 
LOC100134663          0.063   PREDICTED: hypothetical protein, partial 
SHANK1                0.062   SH3 and multiple ankyrin repeat domains 1 
ATN1                  0.061   atrophin-1 
ATN1                  0.061   atrophin-1 
PCLO                  0.061   piccolo isoform 2 
PCLO                  0.061   piccolo isoform 1 
COL1A1                0.061   alpha 1 type I collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press