Guide to the Human Genome
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Name: FLJ22184 Sequence: fasta or formatted (855aa) NCBI GI: 239757130
Description:

PREDICTED: hypothetical protein FLJ22184

Not currently referenced in the text

Other entries for this name:
alt prot {816aa} PREDICTED: hypothetical protein LOC80164
alt prot {1124aa} PREDICTED: hypothetical protein FLJ22184
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5        141           3
 C cysteine            0.4          3           1
 D aspartate           1.8         15           2
 E glutamate           2.9         25           2
 F phenylalanine       0.9          8           1
 G glycine             9.0         77           3
 H histidine           1.1          9           1
 I isoleucine          0.6          5           1
 K lysine              1.8         15           1
 L leucine             9.0         77           3
 M methionine          0.5          4           1
 N asparagine          0.5          4           1
 P proline            22.9        196           5
 Q glutamine           3.5         30           1
 R arginine            6.0         51           3
 S serine             12.9        110           3
 T threonine           6.5         56           2
 V valine              2.7         23           2
 W tryptophan          0.5          4           1
 Y tyrosine            0.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.938   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.593   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.109   nascent polypeptide-associated complex alpha subuni...
MUC2                  0.082   mucin 2 precursor 
SRCAP                 0.075   Snf2-related CBP activator protein 
PRG4                  0.074   proteoglycan 4 isoform D 
PRG4                  0.074   proteoglycan 4 isoform C 
PRG4                  0.074   proteoglycan 4 isoform B 
PRG4                  0.074   proteoglycan 4 isoform A 
RAPH1                 0.073   Ras association and pleckstrin homology domains 1 is...
MLL2                  0.071   myeloid/lymphoid or mixed-lineage leukemia 2 
CIC                   0.070   capicua homolog 
MBD6                  0.068   methyl-CpG binding domain protein 6 
WNK2                  0.067   WNK lysine deficient protein kinase 2 
KIAA1522              0.067   hypothetical protein LOC57648 
RERE                  0.066   atrophin-1 like protein isoform b 
RERE                  0.066   atrophin-1 like protein isoform a 
RERE                  0.066   atrophin-1 like protein isoform a 
GLTSCR1               0.066   glioma tumor suppressor candidate region gene 1 [Ho...
TAF4                  0.066   TBP-associated factor 4 
LOC100133756          0.063   PREDICTED: hypothetical protein, partial 
WIPF3                 0.062   WAS/WASL interacting protein family, member 3 [Homo...
LOC100134663          0.062   PREDICTED: hypothetical protein, partial 
KDM6B                 0.062   lysine (K)-specific demethylase 6B 
COL2A1                0.060   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.060   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FMN2                  0.059   formin 2 
PCLO                  0.058   piccolo isoform 2 
PCLO                  0.058   piccolo isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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