Guide to the Human Genome
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Name: LOC643355 Sequence: fasta or formatted (520aa) NCBI GI: 169161145
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {426aa} PREDICTED: hypothetical protein
alt mRNA {520aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         60           3
 C cysteine            1.0          5           1
 D aspartate           1.0          5           1
 E glutamate           5.4         28           2
 F phenylalanine       2.1         11           1
 G glycine            11.7         61           3
 H histidine           2.5         13           1
 I isoleucine          0.4          2           1
 K lysine              1.3          7           1
 L leucine             6.0         31           3
 M methionine          0.4          2           1
 N asparagine          0.8          4           1
 P proline            15.6         81           3
 Q glutamine           3.8         20           2
 R arginine           14.8         77           4
 S serine             11.3         59           2
 T threonine           3.8         20           1
 V valine              4.0         21           2
 W tryptophan          1.7          9           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC643355             1.000   PREDICTED: hypothetical protein 
LOC643355             0.464   PREDICTED: hypothetical protein 
NACA                  0.052   nascent polypeptide-associated complex alpha subuni...
SRRM2                 0.042   splicing coactivator subunit SRm300 
ATN1                  0.036   atrophin-1 
ATN1                  0.036   atrophin-1 
SRRM1                 0.035   serine/arginine repetitive matrix 1 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
FLJ37078              0.034   hypothetical protein LOC222183 
WDR33                 0.032   WD repeat domain 33 isoform 1 
LOC100291624          0.032   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.032   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.032   PREDICTED: hypothetical protein XP_002342583 
APC2                  0.032   adenomatosis polyposis coli 2 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
KIF26A                0.031   kinesin family member 26A 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
LOC100286986          0.031   PREDICTED: hypothetical protein XP_002344191 
SHANK1                0.031   SH3 and multiple ankyrin repeat domains 1 
COL3A1                0.030   collagen type III alpha 1 preproprotein 
LOC100292122          0.030   PREDICTED: hypothetical protein XP_002345138 
GGN                   0.029   gametogenetin 
MYO15A                0.029   myosin XV 
C2orf55               0.029   hypothetical protein LOC343990 
SNX26                 0.028   sorting nexin 26 
UNCX                  0.028   UNC homeobox 
WIPF2                 0.028   WIRE protein 
CASKIN2               0.028   cask-interacting protein 2 isoform b 
CASKIN2               0.028   cask-interacting protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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