Guide to the Human Genome
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Name: YME1L1 Sequence: fasta or formatted (773aa) NCBI GI: 21327685
Description:

YME1-like 1 isoform 1

Referenced in:

Metalloproteases

Other entries for this name:
alt prot [716aa] YME1-like 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         50           2
 C cysteine            0.6          5           1
 D aspartate           4.8         37           1
 E glutamate           7.0         54           2
 F phenylalanine       5.0         39           2
 G glycine             6.6         51           2
 H histidine           2.6         20           2
 I isoleucine          6.1         47           3
 K lysine              7.4         57           2
 L leucine            10.1         78           3
 M methionine          2.7         21           1
 N asparagine          4.1         32           1
 P proline             4.7         36           2
 Q glutamine           3.8         29           1
 R arginine            5.4         42           2
 S serine              7.8         60           2
 T threonine           6.2         48           3
 V valine              6.1         47           2
 W tryptophan          0.6          5           1
 Y tyrosine            1.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YME1-like 1 isoform 1 
YME1L1                0.878   YME1-like 1 isoform 3 
AFG3L2                0.219   AFG3 ATPase family gene 3-like 2 
SPG7                  0.191   spastic paraplegia 7 isoform 1 
PSMC5                 0.105   proteasome 26S ATPase subunit 5 
VCP                   0.102   valosin-containing protein 
PSMC2                 0.099   proteasome 26S ATPase subunit 2 
PSMC6                 0.095   proteasome 26S ATPase subunit 6 
PSMC1                 0.090   proteasome 26S ATPase subunit 1 
PSMC3                 0.090   proteasome 26S ATPase subunit 3 
SPATA5L1              0.088   spermatogenesis associated 5-like 1 
SPG7                  0.087   spastic paraplegia 7 isoform 2 
SPATA5                0.087   spermatogenesis associated 5 
NVL                   0.086   nuclear VCP-like isoform 2 
NVL                   0.086   nuclear VCP-like isoform 1 
LOC652826             0.085   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC4                 0.085   proteasome 26S ATPase subunit 4 isoform 2 
PSMC4                 0.085   proteasome 26S ATPase subunit 4 isoform 1 
PEX6                  0.081   peroxisomal biogenesis factor 6 
KATNA1                0.080   katanin p60 subunit A 1 
KATNAL1               0.080   katanin p60 subunit A-like 1 
KATNAL1               0.080   katanin p60 subunit A-like 1 
PEX1                  0.078   peroxin1 
VPS4B                 0.071   vacuolar protein sorting factor 4B 
VPS4A                 0.069   vacuolar protein sorting factor 4A 
ATAD2                 0.068   ATPase family, AAA domain containing 2 
SPAST                 0.067   spastin isoform 2 
SPAST                 0.067   spastin isoform 1 
FIGNL1                0.067   fidgetin-like 1 
FIGNL1                0.067   fidgetin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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