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Search of human proteins with 6912486
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens] 293 4e-80
gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo ... 63 7e-11
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 53 7e-08
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 48 2e-06
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 44 4e-05
gi|28875797 small protein rich in arginine and glycine [Homo sap... 43 7e-05
gi|55956788 nucleolin [Homo sapiens] 42 2e-04
gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens] 42 2e-04
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 41 4e-04
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 40 5e-04
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 40 5e-04
gi|9966841 cell death regulator aven [Homo sapiens] 40 5e-04
gi|12056465 fibrillarin [Homo sapiens] 39 0.001
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 38 0.003
gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo s... 38 0.003
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 38 0.003
gi|109452587 family with sequence similarity 98, member B isofor... 37 0.004
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 35 0.015
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 35 0.015
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 35 0.026
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 35 0.026
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 35 0.026
gi|5901998 Sm protein F [Homo sapiens] 34 0.034
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 34 0.044
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 33 0.057
gi|28269693 xylosyltransferase I [Homo sapiens] 33 0.057
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 33 0.098
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 33 0.098
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 32 0.13
>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
Length = 139
Score = 293 bits (749), Expect = 4e-80
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI 120
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI 120
Query: 121 PGTGRGQPEKKPGRQAGKQ 139
PGTGRGQPEKKPGRQAGKQ
Sbjct: 121 PGTGRGQPEKKPGRQAGKQ 139
>gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo
sapiens]
Length = 126
Score = 63.2 bits (152), Expect = 7e-11
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPD-----EIIDMVKEEVVAKGRGRGG---LQQQKQQKGRGMGGAGRG 110
RGS I++L +PD ++ +K + G GRG L+ Q +GRG G GRG
Sbjct: 64 RGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGR-GMGRG 119
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 53.1 bits (126), Expect = 7e-08
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGR 125
+Y +PD + +D + +V K K +K + G GRG GRGRG G GR
Sbjct: 66 RYFILPDSLPLDTLLVDVEPK---------VKSKKREAVAGRGRG--RGRGRGRGRGRGR 114
Query: 126 GQPEK 130
G P +
Sbjct: 115 GGPRR 119
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 48.1 bits (113), Expect = 2e-06
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S K+ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEIID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 43.9 bits (102), Expect = 4e-05
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + + LKN +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGR 125
+Y + D + +D + +V K K +K + G GRG GRGRG G GR
Sbjct: 66 RYFILLDSLPLDTLLVDVEPK---------VKSKKREAVAGRGRG--RGRGRGRGRGRGR 114
Query: 126 GQPEK 130
G P +
Sbjct: 115 GGPRR 119
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 43.1 bits (100), Expect = 7e-05
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQ 127
G GRGGL + +G G+GG GRG+ G RGRGG G GRG+
Sbjct: 161 GPGRGGLGRGAMGRG-GIGGRGRGMIG-RGRGGFGGRGRGR 199
Score = 36.2 bits (82), Expect = 0.009
Identities = 22/39 (56%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 88 RGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
RGRGG + G G G GRG GGRGRG I G GRG
Sbjct: 157 RGRGG----PGRGGLGRGAMGRGGIGGRGRGMI-GRGRG 190
Score = 34.3 bits (77), Expect = 0.034
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFG--GRGRGGIPGTGRGQPEKKPGRQAGK 138
G RGG+ RG GG GRG G GRGGI G GRG + G G+
Sbjct: 150 GLRRGGV--------RGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR 195
Score = 26.9 bits (58), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGV 111
GRGRGG + + +GRG G R V
Sbjct: 186 GRGRGGFGGRGRGRGRGRGALARPV 210
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/39 (56%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTG 124
+G GRGG GRG G GRG FGGRGRGG G G
Sbjct: 656 RGGGRGGFG------GRGGGRGGRGGFGGRGRGGFGGRG 688
Score = 35.4 bits (80), Expect = 0.015
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 85 AKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRG-----RGGIPGTGRGQPEKKPGRQAGK 138
AK +G GG G G GRG FGGRG RGG G GRG + G + G+
Sbjct: 645 AKPKGEGGF---------GGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGR 694
>gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]
Length = 123
Score = 42.0 bits (97), Expect = 2e-04
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 66 IKYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRG 110
++Y+ IPD++ I E+ Q Q + R GG G+G
Sbjct: 79 VRYVHIPDDVNITSTIEQ-----------QLQIIHRVRNFGGKGQG 113
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 40.8 bits (94), Expect = 4e-04
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQA 136
GRGR G + + GRG GG GRG GRG GG G GRG+ + R A
Sbjct: 1672 GRGRWGRWGRWSRGGRGRGGRGRG-SRGRGGGGTRGRGRGRGGRGASRGA 1720
Score = 33.9 bits (76), Expect = 0.044
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQA 136
GRGRGG + + +GRG GG RG GRGRGG G RG K R A
Sbjct: 1686 GRGRGG--RGRGSRGRG-GGGTRG--RGRGRGG-RGASRGATRAKRARIA 1729
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 96 QKQQKGRGMGGAGRG------VFGGRGRGGIPGTGRGQPEKKPGRQAGK 138
++ K RG GG GR GGRGRG G GRG + G G+
Sbjct: 1662 KRNWKTRGTGGRGRWGRWGRWSRGGRGRG---GRGRGSRGRGGGGTRGR 1707
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 40.4 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 85 AKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQP 128
A+G GRG + ++ +G G+ G GRG GRGRG G GRG+P
Sbjct: 54 ARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 72 PDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKK 131
P + + +E GRGRG + +Q GRG G GRG GRGRG G GRG+
Sbjct: 43 PSPVSGVRREGARGGGRGRG----RWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPP 98
Query: 132 PG 133
G
Sbjct: 99 SG 100
Score = 35.8 bits (81), Expect = 0.012
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+GRGRG + + G G+GG G G GG GG G R +P P AG
Sbjct: 86 RGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGG--GAPRREPVPFPSGSAG 135
Score = 33.9 bits (76), Expect = 0.044
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 83 VVAKGRGRGGLQQQKQQKGRG-----MGGAGRGVFGGRGRGGIPGTGRGQPEKKP 132
V +GRGRG + + + +GRG GG+G G GG G GG G G P ++P
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGG-GCGGGGSGGGGAPRREP 126
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 40.4 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 85 AKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQP 128
A+G GRG + ++ +G G+ G GRG GRGRG G GRG+P
Sbjct: 54 ARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 72 PDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKK 131
P + + +E GRGRG + +Q GRG G GRG GRGRG G GRG+
Sbjct: 43 PSPVSGVRREGARGGGRGRG----RWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPP 98
Query: 132 PG 133
G
Sbjct: 99 SG 100
Score = 35.8 bits (81), Expect = 0.012
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+GRGRG + + G G+GG G G GG GG G R +P P AG
Sbjct: 86 RGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGG--GAPRREPVPFPSGSAG 135
Score = 33.9 bits (76), Expect = 0.044
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 83 VVAKGRGRGGLQQQKQQKGRG-----MGGAGRGVFGGRGRGGIPGTGRGQPEKKP 132
V +GRGRG + + + +GRG GG+G G GG G GG G G P ++P
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGG-GCGGGGSGGGGAPRREP 126
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 40.4 bits (93), Expect = 5e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 84 VAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQP 128
VA+G G GG ++GRG G RG GGRG GG P R +P
Sbjct: 35 VARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREP 79
Score = 27.7 bits (60), Expect = 3.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 87 GRGRGGLQQQKQQKG------RGMGGAGRGVFGGRGRGGIPGTGRGQ 127
GRGR G + ++ G RG GG G G GGR G GRG+
Sbjct: 16 GRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRR-----GRGRGR 57
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 38.9 bits (89), Expect = 0.001
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI---PGTGRGQPEKKPGRQAGK 138
GRGRGG + + + G G GG G G GGRG GG GRG+ K+ G Q+GK
Sbjct: 33 GRGRGGGFRGRGRGGGGGGGGGGG--GGRGGGGFHSGGNRGRGRGGKR-GNQSGK 84
Score = 35.4 bits (80), Expect = 0.015
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 89 GRGGLQQQKQQKGRGMGGAGR---GVFGGRGRGGIPGTGRG 126
GRGG + + GRG G GR G F GRGRGG G G G
Sbjct: 14 GRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG 54
Score = 34.7 bits (78), Expect = 0.026
Identities = 20/38 (52%), Positives = 21/38 (55%)
Query: 89 GRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
GRGG +GRG G GRG GG G GG G GRG
Sbjct: 23 GRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 102 RGMGGAGRGVFGGR----GRGGI-PGTGRGQPEKKPGRQAG 137
RG G GRG FG R GRGG G GRG + GR G
Sbjct: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGG 48
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/40 (50%), Positives = 21/40 (52%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
G GG Q Q G G GG G+ GGRGRGG G G G
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227
Score = 35.4 bits (80), Expect = 0.015
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
GRGRGG G GG G G GG GRGG P G G
Sbjct: 385 GRGRGGPM--------GRGGYGGGGSGGGGRGGFPSGGGG 416
Score = 33.5 bits (75), Expect = 0.057
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG-QPEKKPGRQAGK 138
G G GG QQ + GRG GG+G G GG G GG + G +P + G + G+
Sbjct: 202 GGGSGGYGQQ-DRGGRGRGGSGGG--GGGGGGGYNRSSGGYEPRGRGGGRGGR 251
Score = 30.8 bits (68), Expect = 0.37
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 87 GRGRGGLQQQK---QQKGRGMGGAGRGVFGGRGRGG 119
G G GG + + +GRG G GRG GG RGG
Sbjct: 226 GGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGG 261
Score = 29.6 bits (65), Expect = 0.83
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 101 GRGMGGAGRG---VFGGRGRGGIPGTGRGQPEKKPGRQAGKQ 139
G G GG GRG GG G GG G GRG G G+Q
Sbjct: 380 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQ 421
Score = 27.7 bits (60), Expect = 3.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
G G GG + Q GG G +G + + G G+G + + GR G
Sbjct: 169 GGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRG 219
Score = 27.7 bits (60), Expect = 3.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 89 GRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKK 131
GRGG + RG GG G GGRG G G G G+ + +
Sbjct: 475 GRGGYDRGGY---RGRGGDRGGFRGGRGGGDRGGFGPGKMDSR 514
Score = 27.3 bits (59), Expect = 4.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 88 RGRGGLQQQKQQKGRGMGGAGRGVFG----GRGRGGIPGTGRGQPEKKPGRQAG 137
+G G Q G G GG G G +G GG G G G ++ G +G
Sbjct: 153 QGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSG 206
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKK 131
G RGG + + +G GG G G GG G G + G + +++
Sbjct: 478 GYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRR 522
>gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
sapiens]
Length = 86
Score = 37.7 bits (86), Expect = 0.003
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKFWRMPEC 59
P L P++V+LK G Y G+LVS D +MN+ N E I DG + E
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI----DGALSGHLGEV 62
Query: 60 YIRGSTIKYLRIPDE 74
IR + + Y+R +E
Sbjct: 63 LIRCNNVLYIRGVEE 77
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 37.7 bits (86), Expect = 0.003
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSR---DGDKFWRMPE 58
LP SL Q+ + L+ Y GHL + + ++ + C R D W P
Sbjct: 108 LPPSLAPAGQSLTKIETLRLAIRYIGHLSAV---LGLSEESLQCRRRQRGDAGSPWGCPL 164
Query: 59 CYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMG---GAGRGVFGGR 115
C RG + + A+G+G+G Q Q Q +G+G G G G+G G
Sbjct: 165 CPDRGPA--------------EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGL 210
Query: 116 GRGGIPGTGRGQPEKKPGRQAGKQ 139
+ G P PG QA +
Sbjct: 211 VSAVLAEASWGSPSACPGAQAAPE 234
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 37.4 bits (85), Expect = 0.004
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
G GRGG Q + GRG G GRG +GGRG G G G G
Sbjct: 381 GGGRGGFQGRGDYGGRG-GYGGRGGYGGRGYGDPYGGGGG 419
Score = 32.3 bits (72), Expect = 0.13
Identities = 20/40 (50%), Positives = 21/40 (52%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
GRG GG + G G GG G G GG G GG G GRG
Sbjct: 346 GRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRG 385
Score = 30.8 bits (68), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 95 QQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRG 126
Q++Q+ G G GG G G GG GG G GRG
Sbjct: 326 QKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRG 357
Score = 30.4 bits (67), Expect = 0.48
Identities = 21/41 (51%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRG-RGGIPGTGRG 126
G GRGG G G GG GRG GG G RGG G G G
Sbjct: 332 GGGRGGW-------GGGGGGGGRGGGGGGGGRGGWGGGGGG 365
Score = 29.6 bits (65), Expect = 0.83
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 101 GRGMGGAGRGVFGGRGRGGIPGTG 124
G G GG G G GG GRGG G G
Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGRG 391
Score = 29.6 bits (65), Expect = 0.83
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 103 GMGGAGRGVFGGR----------GRGGIPGTGRGQP 128
G GG GRG F GR GRGG G G G P
Sbjct: 378 GGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDP 413
Score = 27.3 bits (59), Expect = 4.1
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPG-TGRG 126
G GRGG G G GG G G +GG G GG G GRG
Sbjct: 353 GGGRGGWGGGGG--GWGGGGGGGGGWGGGGGGGRGGFQGRG 391
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 35.4 bits (80), Expect = 0.015
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGG-RGRGGIPGTGRG 126
G GRGG GRG +GRG FGG RG GG G+G G
Sbjct: 203 GGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDG 243
Score = 27.7 bits (60), Expect = 3.1
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 89 GRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAGKQ 139
GRGG + G G GG+G G G GG G G G G +G Q
Sbjct: 224 GRGGFGGSRG--GGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ 272
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 35.4 bits (80), Expect = 0.015
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGG-RGRGGIPGTGRG 126
G GRGG GRG +GRG FGG RG GG G+G G
Sbjct: 203 GGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDG 243
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+G GRGG +G G GG GRG GGRG G G G G + GR G
Sbjct: 169 RGGGRGG-------RGGGRGGGGRG--GGRGGGFRGGRGGGGGGFRGGRGGG 211
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAG---RGVFGGRGRGGIPGTGRGQPEKKPGR 134
+G GRGG + G GG+ RG GG G G G GRG + GR
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55
Score = 28.9 bits (63), Expect = 1.4
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 86 KGRGRGGLQQ---QKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+G G GG + +G G GG G G F G GRGG G G G+ G+ G
Sbjct: 13 RGGGGGGFNRGGSSNHFRGGGGGGGG-GNFRGGGRGGF-GRGGGRGGFNKGQDQG 65
Score = 26.6 bits (57), Expect = 7.0
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQ 127
+G GRGG + + G GG G G GG RGG G RG+
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGGRGGG--GGGFRGGRGGGFRGR 215
Score = 26.6 bits (57), Expect = 7.0
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVF-GGRGRGGIPGTG 124
GRG GG + RG G G G F GGRG GG G G
Sbjct: 179 GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG-GGFRGRG 216
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+G GRGG +G G GG GRG GGRG G G G G + GR G
Sbjct: 169 RGGGRGG-------RGGGRGGGGRG--GGRGGGFRGGRGGGGGGFRGGRGGG 211
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAG---RGVFGGRGRGGIPGTGRGQPEKKPGR 134
+G GRGG + G GG+ RG GG G G G GRG + GR
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55
Score = 28.9 bits (63), Expect = 1.4
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 86 KGRGRGGLQQ---QKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
+G G GG + +G G GG G G F G GRGG G G G+ G+ G
Sbjct: 13 RGGGGGGFNRGGSSNHFRGGGGGGGG-GNFRGGGRGGF-GRGGGRGGFNKGQDQG 65
Score = 26.6 bits (57), Expect = 7.0
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 86 KGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQ 127
+G GRGG + + G GG G G GG RGG G RG+
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGGRGGG--GGGFRGGRGGGFRGR 215
Score = 26.6 bits (57), Expect = 7.0
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVF-GGRGRGGIPGTG 124
GRG GG + RG G G G F GGRG GG G G
Sbjct: 179 GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG-GGFRGRG 216
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 73 DEIIDMVKEEV--VAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEK 130
DE DM KE+ K + ++ +GRG G GRG G RGG G G G+ +
Sbjct: 207 DEEEDMGKEDYDDFTKELNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSR 266
Query: 131 KPGR 134
GR
Sbjct: 267 GRGR 270
Score = 32.0 bits (71), Expect = 0.17
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 88 RGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPG 122
RGRG + +GRG G G+G+ GRGRGG G
Sbjct: 320 RGRG----LSRGRGRGSRGRGKGMGRGRGRGGSRG 350
Score = 30.8 bits (68), Expect = 0.37
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 85 AKGRGRG--GLQQQKQQKGRGMGGAGRGVFGGRGRGGIPG 122
++GRGRG G + +GRGMG R GRGRG + G
Sbjct: 240 SRGRGRGYRGRGSRGGSRGRGMGRGSR----GRGRGSMGG 275
Score = 30.4 bits (67), Expect = 0.48
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 94 QQQKQQKGRGMG-GAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
++ K +GRG+ G GRG RGRG G GRG+ + G G
Sbjct: 314 RRSKDSRGRGLSRGRGRG---SRGRGKGMGRGRGRGGSRGGMNKG 355
Score = 28.9 bits (63), Expect = 1.4
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 22/73 (30%)
Query: 84 VAKGRGRGGLQQQKQQKGRGMG-GAGRGVF-GGRGRGGI---------------PGTGRG 126
+++GRGRG + +G+GMG G GRG GG +GG+ G+ R
Sbjct: 324 LSRGRGRGS-----RGRGKGMGRGRGRGGSRGGMNKGGMNDDEDFYDEDMGDGGGGSYRS 378
Query: 127 QPEKKPGRQAGKQ 139
+ KP +Q+ K+
Sbjct: 379 RDHDKPHQQSDKK 391
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 34.3 bits (77), Expect = 0.034
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P LK P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 33.9 bits (76), Expect = 0.044
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
Query: 94 QQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQ 127
QQQ+QQKG GRG G GRGG G GRGQ
Sbjct: 316 QQQQQQKG------GRGAAAG-GRGGTRGRGRGQ 342
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.057
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 55 RMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRG---MGGAGRGV 111
+ P+ + +T K +R D+ + ++ KG+ +GG Q ++ G GG +G
Sbjct: 278 KKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGG 337
Query: 112 FGGRGRGGIPGTGRGQPEKKPGRQAG 137
GG+ G PG G ++K G++ G
Sbjct: 338 LGGKMNSGPPGLG---GKRKGGQRPG 360
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 33.5 bits (75), Expect = 0.057
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 77 DMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPG 133
D+ E A+G G GG G GG GRG R RGG PG RGQ G
Sbjct: 69 DLPAEPAAARGGGGGG----------GGGGGGRGP-QARARGGGPGEPRGQQPASRG 114
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 32.7 bits (73), Expect = 0.098
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 77 DMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGG---RGRGGIPGTGRGQPEKKP- 132
D++ E GRGR G ++ +G G G R GG RG+ G +GR E P
Sbjct: 369 DVLLEVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPH 428
Query: 133 GRQAGKQ 139
G+ AG Q
Sbjct: 429 GKLAGVQ 435
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 32.7 bits (73), Expect = 0.098
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 77 DMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGG---RGRGGIPGTGRGQPEKKP- 132
D++ E GRGR G ++ +G G G R GG RG+ G +GR E P
Sbjct: 226 DVLLEVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPH 285
Query: 133 GRQAGKQ 139
G+ AG Q
Sbjct: 286 GKLAGVQ 292
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 32.7 bits (73), Expect = 0.098
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 77 DMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGG---RGRGGIPGTGRGQPEKKP- 132
D++ E GRGR G ++ +G G G R GG RG+ G +GR E P
Sbjct: 226 DVLLEVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPH 285
Query: 133 GRQAGKQ 139
G+ AG Q
Sbjct: 286 GKLAGVQ 292
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.13
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 87 GRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAG 137
G G GG G GG+GR GG G GG G GRG + G + G
Sbjct: 156 GPGAGG--------GAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERG 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,399
Number of Sequences: 37866
Number of extensions: 360929
Number of successful extensions: 3908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 2460
Number of HSP's gapped (non-prelim): 1177
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.