Guide to the Human Genome
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Name: LOC100291596 Sequence: fasta or formatted (600aa) NCBI GI: 239755920
Description:

PREDICTED: hypothetical protein XP_002344746

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         73           3
 C cysteine            2.2         13           1
 D aspartate           3.2         19           1
 E glutamate           6.0         36           2
 F phenylalanine       2.0         12           1
 G glycine            15.8         95           3
 H histidine           4.5         27           2
 I isoleucine          1.7         10           1
 K lysine              2.2         13           2
 L leucine             7.2         43           2
 M methionine          0.5          3           1
 N asparagine          0.7          4           1
 P proline             5.7         34           3
 Q glutamine           7.0         42           1
 R arginine           15.3         92           3
 S serine              4.2         25           2
 T threonine           2.8         17           1
 V valine              5.5         33           2
 W tryptophan          1.3          8           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.745   PREDICTED: hypothetical protein XP_002343259 
LOC100288068          0.614   PREDICTED: hypothetical protein 
LOC100292370          0.024   PREDICTED: hypothetical protein 
HRNR                  0.022   hornerin 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
FLG2                  0.022   filaggrin family member 2 
LOC100287115          0.021   PREDICTED: hypothetical protein 
LOC728767             0.021   PREDICTED: hypothetical protein 
LOC100287115          0.021   PREDICTED: hypothetical protein XP_002343389 
LOC728767             0.021   PREDICTED: hypothetical protein 
LOC100293316          0.021   PREDICTED: hypothetical protein 
EWSR1                 0.020   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.020   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.020   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.020   Ewing sarcoma breakpoint region 1 isoform 2 
TAF15                 0.020   TBP-associated factor 15 isoform 2 
TAF15                 0.020   TBP-associated factor 15 isoform 1 
FAM98A                0.020   hypothetical protein LOC25940 
RPGR                  0.019   retinitis pigmentosa GTPase regulator isoform C [Hom...
C1orf77               0.018   small protein rich in arginine and glycine 
PPP1R10               0.018   protein phosphatase 1, regulatory subunit 10 
LOC100294413          0.018   PREDICTED: hypothetical protein 
FLG                   0.017   filaggrin 
DMKN                  0.017   dermokine isoform 5 precursor 
DMKN                  0.017   dermokine isoform 3 precursor 
COL6A6                0.017   collagen type VI alpha 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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