SNRPD1 33748

Name: SNRPD1	Sequence: fasta or formatted (119aa)		NCBI GI: 5902102
Description: small nuclear ribonucleoprotein D1 polypeptide 16kDa		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.5 3 1 C cysteine 0.0 0 0 D aspartate 3.4 4 1 E glutamate 5.0 6 1 F phenylalanine 1.7 2 1 G glycine 12.6 15 2 H histidine 2.5 3 1 I isoleucine 4.2 5 1 K lysine 8.4 10 2 L leucine 10.9 13 2 M methionine 3.4 4 1 N asparagine 4.2 5 2 P proline 4.2 5 1 Q glutamine 1.7 2 1 R arginine 13.4 16 2 S serine 4.2 5 1 T threonine 7.6 9 1 V valine 9.2 11 1 W tryptophan 0.0 0 0 Y tyrosine 0.8 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... LOC100129492 0.943 PREDICTED: similar to small nuclear ribonucleoprote... SNRPD3 0.170 small nuclear ribonucleoprotein polypeptide D3 LSM4 0.132 U6 snRNA-associated Sm-like protein 4 LSM10 0.118 LSM10, U7 small nuclear RNA associated ZNF579 0.113 zinc finger protein 579 MBD2 0.104 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.104 methyl-CpG binding domain protein 2 isoform 1 LARP1B 0.094 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.094 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.094 La ribonucleoprotein domain family member 2 isoform ... LARP1 0.090 la related protein isoform 2 LARP1 0.090 la related protein isoform 1 ZC3H4 0.080 zinc finger CCCH-type containing 4 RPS2 0.071 ribosomal protein S2 LSM2 0.066 LSM2 homolog, U6 small nuclear RNA associated PPAN 0.066 peter pan homolog RBM26 0.061 RNA binding motif protein 26 LOC390245 0.057 PREDICTED: hypothetical protein LOC390245 0.057 PREDICTED: hypothetical protein LOC390245 0.057 PREDICTED: hypothetical protein C1orf77 0.057 small protein rich in arginine and glycine ZHX1 0.052 zinc fingers and homeoboxes 1 ZHX1 0.052 zinc fingers and homeoboxes 1 BRWD3 0.047 bromodomain and WD repeat domain containing 3 [Homo... ZRSR2 0.042 U2 small nuclear RNA auxiliary factor 1-like 2 LOC100129053 0.038 PREDICTED: hypothetical protein LOC100129053 0.038 PREDICTED: hypothetical protein LOC100129053 0.038 PREDICTED: hypothetical protein MESP2 0.038 mesoderm posterior 2 homolog Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.