Guide to the Human Genome
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Name: RRS1 Sequence: fasta or formatted (365aa) NCBI GI: 14719402
Description:

homolog of yeast ribosome biogenesis regulatory protein RRS1

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         28           2
 C cysteine            0.3          1           1
 D aspartate           3.3         12           2
 E glutamate           8.5         31           2
 F phenylalanine       1.9          7           1
 G glycine            10.1         37           2
 H histidine           1.1          4           1
 I isoleucine          1.6          6           1
 K lysine             11.0         40           3
 L leucine            10.1         37           2
 M methionine          1.9          7           1
 N asparagine          3.6         13           1
 P proline             7.4         27           2
 Q glutamine           7.4         27           2
 R arginine           11.2         41           3
 S serine              3.3         12           1
 T threonine           3.8         14           2
 V valine              3.8         14           1
 W tryptophan          1.6          6           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homolog of yeast ribosome biogenesis regulatory prot... 
FUS                   0.027   fusion (involved in t(12;16) in malignant liposarcoma...
KRT77                 0.024   keratin 77 
WIPF1                 0.022   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.022   WAS/WASL interacting protein family, member 1 
HNRNPA2B1             0.022   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.022   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
GRIPAP1               0.021   GRIP1 associated protein 1 isoform 1 
TWIST1                0.021   twist 
TCHH                  0.021   trichohyalin 
KRT2                  0.021   keratin 2 
FAM98A                0.020   hypothetical protein LOC25940 
GAR1                  0.020   nucleolar protein family A, member 1 
GAR1                  0.020   nucleolar protein family A, member 1 
TCEAL2                0.020   transcription elongation factor A (SII)-like 2 [Homo...
NCL                   0.018   nucleolin 
HNRNPA1               0.018   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
SCAF1                 0.018   SR-related CTD-associated factor 1 
PRB1                  0.018   proline-rich protein BstNI subfamily 1 isoform 1 pre...
HDGF2                 0.018   hepatoma-derived growth factor-related protein 2 iso...
WDR33                 0.018   WD repeat domain 33 isoform 1 
HDGF2                 0.018   hepatoma-derived growth factor-related protein 2 iso...
AP3D1                 0.017   adaptor-related protein complex 3, delta 1 subunit ...
CCDC9                 0.017   coiled-coil domain containing 9 
POU4F1                0.017   POU domain, class 4, transcription factor 1 
PRB3                  0.017   proline-rich protein BstNI subfamily 3 precursor [H...
TAF15                 0.017   TBP-associated factor 15 isoform 2 
TAF15                 0.017   TBP-associated factor 15 isoform 1 
COL3A1                0.017   collagen type III alpha 1 preproprotein 
LOC284988             0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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