Guide to the Human Genome
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Name: LOC100129492 Sequence: fasta or formatted (119aa) NCBI GI: 169160654
Description:

PREDICTED: similar to small nuclear ribonucleoprotein D1 polypeptide 16kDa

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          4           1
 C cysteine            0.0          0           0
 D aspartate           3.4          4           1
 E glutamate           4.2          5           1
 F phenylalanine       1.7          2           1
 G glycine            11.8         14           2
 H histidine           2.5          3           1
 I isoleucine          3.4          4           1
 K lysine              8.4         10           2
 L leucine            10.9         13           2
 M methionine          3.4          4           1
 N asparagine          4.2          5           2
 P proline             4.2          5           1
 Q glutamine           1.7          2           1
 R arginine           14.3         17           2
 S serine              4.2          5           1
 T threonine           7.6          9           1
 V valine             10.1         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to small nuclear ribonucleoprote... 
SNRPD1                0.948   small nuclear ribonucleoprotein D1 polypeptide 16kDa ...
SNRPD3                0.118   small nuclear ribonucleoprotein polypeptide D3 
ZNF579                0.114   zinc finger protein 579 
MBD2                  0.104   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.104   methyl-CpG binding domain protein 2 isoform 1 
LSM10                 0.104   LSM10, U7 small nuclear RNA associated 
LARP1B                0.095   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.095   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.095   La ribonucleoprotein domain family member 2 isoform ...
LSM4                  0.090   U6 snRNA-associated Sm-like protein 4 
LARP1                 0.090   la related protein isoform 2 
LARP1                 0.090   la related protein isoform 1 
ZC3H4                 0.081   zinc finger CCCH-type containing 4 
RPS2                  0.071   ribosomal protein S2 
PPAN                  0.066   peter pan homolog 
RBM26                 0.062   RNA binding motif protein 26 
LOC390245             0.057   PREDICTED: hypothetical protein 
LOC390245             0.057   PREDICTED: hypothetical protein 
LOC390245             0.057   PREDICTED: hypothetical protein 
C1orf77               0.057   small protein rich in arginine and glycine 
ZHX1                  0.052   zinc fingers and homeoboxes 1 
ZHX1                  0.052   zinc fingers and homeoboxes 1 
LSM2                  0.047   LSM2 homolog, U6 small nuclear RNA associated 
BRWD3                 0.047   bromodomain and WD repeat domain containing 3 [Homo...
ZRSR2                 0.043   U2 small nuclear RNA auxiliary factor 1-like 2 
LOC100129053          0.038   PREDICTED: hypothetical protein 
LOC100129053          0.038   PREDICTED: hypothetical protein 
LOC100129053          0.038   PREDICTED: hypothetical protein 
MESP2                 0.038   mesoderm posterior 2 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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