LSM2 277

Name: LSM2	Sequence: fasta or formatted (95aa)		NCBI GI: 10863977
Description: LSM2 homolog, U6 small nuclear RNA associated		Referenced in: RNases and RNA Stability Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 4 2 C cysteine 2.1 2 1 D aspartate 8.4 8 1 E glutamate 4.2 4 1 F phenylalanine 4.2 4 2 G glycine 3.2 3 1 H histidine 2.1 2 1 I isoleucine 4.2 4 1 K lysine 8.4 8 1 L leucine 12.6 12 2 M methionine 2.1 2 1 N asparagine 3.2 3 1 P proline 3.2 3 1 Q glutamine 7.4 7 2 R arginine 3.2 3 1 S serine 7.4 7 1 T threonine 4.2 4 1 V valine 11.6 11 3 W tryptophan 0.0 0 0 Y tyrosine 4.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LSM2 homolog, U6 small nuclear RNA associated LSM4 0.139 U6 snRNA-associated Sm-like protein 4 LSM10 0.121 LSM10, U7 small nuclear RNA associated SNRPD1 0.085 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... LOC100129492 0.061 PREDICTED: similar to small nuclear ribonucleoprote... LSM3 0.061 Lsm3 protein LSM6 0.061 Sm protein F SNRPF 0.042 small nuclear ribonucleoprotein polypeptide F LSM5 0.018 LSM5 homolog, U6 small nuclear RNA associated isoform... BPNT1 0.012 3'(2'), 5'-bisphosphate nucleotidase 1 SNRPD3 0.006 small nuclear ribonucleoprotein polypeptide D3 TSC1 0.006 tuberous sclerosis 1 protein isoform 1 TSC1 0.006 tuberous sclerosis 1 protein isoform 4 TSC1 0.006 tuberous sclerosis 1 protein isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.