Guide to the Human Genome
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Name: GAR1 Sequence: fasta or formatted (217aa) NCBI GI: 9506713
Description:

nucleolar protein family A, member 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [217aa] nucleolar protein family A, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          2           1
 C cysteine            1.4          3           1
 D aspartate           3.2          7           2
 E glutamate           4.1          9           1
 F phenylalanine       8.3         18           1
 G glycine            33.6         73           9
 H histidine           1.4          3           1
 I isoleucine          1.8          4           1
 K lysine              5.5         12           2
 L leucine             5.1         11           2
 M methionine          0.9          2           1
 N asparagine          4.1          9           1
 P proline             5.5         12           2
 Q glutamine           2.8          6           1
 R arginine           11.5         25           1
 S serine              3.2          7           2
 T threonine           0.9          2           2
 V valine              3.2          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein family A, member 1 
GAR1                  1.000   nucleolar protein family A, member 1 
FUS                   0.138   fusion (involved in t(12;16) in malignant liposarcoma...
FAM98B                0.125   family with sequence similarity 98, member B isofor...
FBL                   0.103   fibrillarin 
EWSR1                 0.100   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.100   Ewing sarcoma breakpoint region 1 isoform 2 
NCL                   0.098   nucleolin 
EWSR1                 0.096   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.096   Ewing sarcoma breakpoint region 1 isoform 1 
KRT1                  0.087   keratin 1 
HNRNPA3               0.080   heterogeneous nuclear ribonucleoprotein A3 
TAF15                 0.078   TBP-associated factor 15 isoform 2 
TAF15                 0.078   TBP-associated factor 15 isoform 1 
KRT10                 0.078   keratin 10 
KRT2                  0.078   keratin 2 
DHX9                  0.076   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
KRT9                  0.076   keratin 9 
KRT13                 0.071   keratin 13 isoform b 
KRT13                 0.071   keratin 13 isoform a 
HNRNPA0               0.071   heterogeneous nuclear ribonucleoprotein A0 
HNRNPUL1              0.071   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.071   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
FAM98A                0.071   hypothetical protein LOC25940 
POU4F1                0.071   POU domain, class 4, transcription factor 1 
ARID1B                0.071   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.071   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.071   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100292082          0.071   PREDICTED: hypothetical protein XP_002345881 
KRT3                  0.071   keratin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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