Guide to the Human Genome
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Name: HNRPDL Sequence: fasta or formatted (420aa) NCBI GI: 14110407
Description:

heterogeneous nuclear ribonucleoprotein D-like

Referenced in:

hnRNP

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         34           6
 C cysteine            0.7          3           1
 D aspartate           4.8         20           2
 E glutamate           5.5         23           2
 F phenylalanine       3.6         15           1
 G glycine            12.1         51           3
 H histidine           1.9          8           1
 I isoleucine          3.1         13           1
 K lysine              6.7         28           2
 L leucine             5.5         23           2
 M methionine          1.2          5           1
 N asparagine          4.3         18           2
 P proline             6.2         26           3
 Q glutamine           6.7         28           6
 R arginine            7.9         33           4
 S serine              7.6         32           3
 T threonine           4.3         18           1
 V valine              3.6         15           2
 W tryptophan          0.7          3           1
 Y tyrosine            5.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein D-like [Homo... 
HNRNPD                0.458   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.444   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPAB               0.423   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPD                0.352   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.337   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPAB               0.331   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPA3               0.205   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA2B1             0.204   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.203   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA1               0.203   heterogeneous nuclear ribonucleoprotein A1 isoform b...
MSI2                  0.201   musashi 2 isoform a 
HNRNPA1L2             0.201   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.201   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.198   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
MSI2                  0.182   musashi 2 isoform b 
MSI1                  0.173   musashi 1 
HNRNPA0               0.173   heterogeneous nuclear ribonucleoprotein A0 
LOC120364             0.163   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.163   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.160   PREDICTED: similar to heterogeneous nuclear ribonuc...
DAZAP1                0.143   DAZ associated protein 1 isoform a 
DAZAP1                0.143   DAZ associated protein 1 isoform b 
TARDBP                0.112   TAR DNA binding protein 
CIRBP                 0.074   cold inducible RNA binding protein 
RBM39                 0.069   RNA binding motif protein 39 isoform b 
RBM39                 0.069   RNA binding motif protein 39 isoform a 
RBM3                  0.069   RNA binding motif protein 3 
RBM23                 0.061   RNA binding motif protein 23 isoform 1 
RBM23                 0.059   RNA binding motif protein 23 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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