Guide to the Human Genome
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Name: LOC100288068 Sequence: fasta or formatted (510aa) NCBI GI: 239750438
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {457aa} PREDICTED: hypothetical protein XP_002343259
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         56           2
 C cysteine            2.2         11           1
 D aspartate           2.9         15           1
 E glutamate           6.1         31           2
 F phenylalanine       3.1         16           2
 G glycine            17.8         91           3
 H histidine           4.9         25           1
 I isoleucine          2.0         10           1
 K lysine              2.0         10           2
 L leucine             7.5         38           2
 M methionine          0.8          4           1
 N asparagine          0.8          4           1
 P proline             3.1         16           1
 Q glutamine           7.5         38           1
 R arginine           15.7         80           3
 S serine              3.1         16           1
 T threonine           2.5         13           1
 V valine              5.9         30           2
 W tryptophan          0.8          4           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288068          0.736   PREDICTED: hypothetical protein XP_002343259 
LOC100291596          0.728   PREDICTED: hypothetical protein XP_002344746 
LOC728767             0.029   PREDICTED: hypothetical protein 
LOC728767             0.029   PREDICTED: hypothetical protein 
HRNR                  0.026   hornerin 
FLG2                  0.026   filaggrin family member 2 
LOC100287115          0.024   PREDICTED: hypothetical protein 
LOC100287115          0.024   PREDICTED: hypothetical protein XP_002343389 
LOC100293316          0.024   PREDICTED: hypothetical protein 
EWSR1                 0.024   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.024   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.024   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.024   Ewing sarcoma breakpoint region 1 isoform 2 
TAF15                 0.024   TBP-associated factor 15 isoform 2 
TAF15                 0.024   TBP-associated factor 15 isoform 1 
FAM98A                0.024   hypothetical protein LOC25940 
RPGR                  0.023   retinitis pigmentosa GTPase regulator isoform C [Hom...
C1orf77               0.022   small protein rich in arginine and glycine 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
PPP1R10               0.022   protein phosphatase 1, regulatory subunit 10 
LOC100294413          0.022   PREDICTED: hypothetical protein 
LOC100292370          0.021   PREDICTED: hypothetical protein 
FLG                   0.020   filaggrin 
DMKN                  0.020   dermokine isoform 5 precursor 
DMKN                  0.020   dermokine isoform 3 precursor 
COL6A6                0.020   collagen type VI alpha 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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