LSM6 33725

Name: LSM6	Sequence: fasta or formatted (80aa)		NCBI GI: 5901998
Description: Sm protein F		Referenced in: RNases and RNA Stability Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.8 3 1 C cysteine 1.2 1 1 D aspartate 5.0 4 1 E glutamate 3.8 3 2 F phenylalanine 2.5 2 1 G glycine 8.8 7 1 H histidine 0.0 0 0 I isoleucine 6.2 5 2 K lysine 7.5 6 1 L leucine 10.0 8 1 M methionine 3.8 3 1 N asparagine 7.5 6 2 P proline 2.5 2 1 Q glutamine 6.2 5 1 R arginine 7.5 6 2 S serine 5.0 4 1 T threonine 3.8 3 1 V valine 8.8 7 3 W tryptophan 0.0 0 0 Y tyrosine 6.2 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Sm protein F SNRPF 0.365 small nuclear ribonucleoprotein polypeptide F SNRPG 0.131 small nuclear ribonucleoprotein polypeptide G LOC100132425 0.109 PREDICTED: similar to small nuclear ribonucleoprote... LOC100130932 0.088 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.088 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.088 PREDICTED: small nuclear ribonucleoprotein G-like p... LSM2 0.073 LSM2 homolog, U6 small nuclear RNA associated LSM4 0.066 U6 snRNA-associated Sm-like protein 4 SNRPD1 0.036 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... LSM3 0.029 Lsm3 protein LSM7 0.022 U6 snRNA-associated Sm-like protein LSm7 EFCAB4B 0.015 EF-hand calcium binding domain 4B isoform c EFCAB4B 0.015 EF-hand calcium binding domain 4B isoform b EFCAB4B 0.015 EF-hand calcium binding domain 4B isoform a DAPK1 0.007 death-associated protein kinase 1 SNRPD3 0.007 small nuclear ribonucleoprotein polypeptide D3 ATXN2L 0.007 ataxin 2 related protein isoform B ATXN2L 0.007 ataxin 2 related protein isoform E ATXN2L 0.007 ataxin 2 related protein isoform C ATXN2L 0.007 ataxin 2 related protein isoform A ATXN2L 0.007 ataxin 2 related protein isoform D Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.