Guide to the Human Genome
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Name: ZC3H4 Sequence: fasta or formatted (1303aa) NCBI GI: 126723060
Description:

zinc finger CCCH-type containing 4

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         83           4
 C cysteine            0.8         11           1
 D aspartate           7.1         92           3
 E glutamate           7.8        102           4
 F phenylalanine       2.1         28           1
 G glycine            12.0        157           5
 H histidine           2.8         37           2
 I isoleucine          1.2         16           1
 K lysine              5.7         74           2
 L leucine             5.5         72           2
 M methionine          3.0         39           2
 N asparagine          2.2         29           1
 P proline            14.5        189          12
 Q glutamine           3.6         47           3
 R arginine            7.2         94           2
 S serine              8.9        116           3
 T threonine           3.9         51           2
 V valine              2.1         27           2
 W tryptophan          0.2          3           1
 Y tyrosine            2.8         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 4 
ZC3H6                 0.196   zinc finger CCCH-type domain containing 6 
ZC3H8                 0.044   zinc finger CCCH-type containing 8 
COL2A1                0.028   collagen, type II, alpha 1 isoform 2 precursor [Hom...
NACA                  0.028   nascent polypeptide-associated complex alpha subuni...
COL4A5                0.027   type IV collagen alpha 5 isoform 3 precursor 
COL1A1                0.027   alpha 1 type I collagen preproprotein 
COL4A5                0.026   type IV collagen alpha 5 isoform 1 precursor 
COL3A1                0.026   collagen type III alpha 1 preproprotein 
COL4A5                0.026   type IV collagen alpha 5 isoform 2 precursor 
C6orf132              0.026   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.026   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.026   PREDICTED: hypothetical protein LOC647024 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
SF3A2                 0.024   splicing factor 3a, subunit 2 
PRB2                  0.024   proline-rich protein BstNI subfamily 2 
RPGR                  0.024   retinitis pigmentosa GTPase regulator isoform C [Hom...
COL11A1               0.023   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.023   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.023   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL18A1               0.023   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.023   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.023   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL17A1               0.023   alpha 1 type XVII collagen 
PRB1                  0.023   proline-rich protein BstNI subfamily 1 isoform 1 pre...
DIAPH1                0.023   diaphanous 1 isoform 2 
DIAPH1                0.023   diaphanous 1 isoform 1 
COL22A1               0.022   collagen, type XXII, alpha 1 
SFRS15                0.022   splicing factor, arginine/serine-rich 15 isoform 3 ...
COL5A1                0.022   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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