Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AVEN Sequence: fasta or formatted (362aa) NCBI GI: 9966841
Description:

cell death regulator aven

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         25           4
 C cysteine            1.1          4           1
 D aspartate           6.9         25           2
 E glutamate          10.5         38           3
 F phenylalanine       1.9          7           1
 G glycine            15.5         56           8
 H histidine           0.6          2           1
 I isoleucine          1.7          6           1
 K lysine              5.0         18           1
 L leucine             7.7         28           3
 M methionine          1.1          4           1
 N asparagine          3.3         12           2
 P proline             6.9         25           1
 Q glutamine           4.4         16           1
 R arginine            8.3         30           2
 S serine              8.3         30           2
 T threonine           2.5          9           1
 V valine              5.2         19           2
 W tryptophan          1.1          4           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell death regulator aven 
FBL                   0.048   fibrillarin 
HNRNPR                0.045   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.045   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.045   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.045   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
SYNCRIP               0.045   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.045   synaptotagmin binding, cytoplasmic RNA interacting ...
FUS                   0.045   fusion (involved in t(12;16) in malignant liposarcoma...
TAF15                 0.043   TBP-associated factor 15 isoform 2 
TAF15                 0.043   TBP-associated factor 15 isoform 1 
GAR1                  0.043   nucleolar protein family A, member 1 
GAR1                  0.043   nucleolar protein family A, member 1 
SHOX2                 0.043   short stature homeobox 2 isoform a 
FAM98B                0.043   family with sequence similarity 98, member B isofor...
GSK3A                 0.042   glycogen synthase kinase 3 alpha 
KRT10                 0.042   keratin 10 
HNRNPA2B1             0.042   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.042   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KRT1                  0.041   keratin 1 
KRT9                  0.041   keratin 9 
LOC100288548          0.039   PREDICTED: hypothetical protein XP_002342129 
XYLT1                 0.039   xylosyltransferase I 
LOC338758             0.038   PREDICTED: hypothetical protein 
LOC338758             0.038   PREDICTED: hypothetical protein 
MBD2                  0.038   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.038   methyl-CpG binding domain protein 2 isoform 1 
LOC338758             0.038   PREDICTED: hypothetical protein 
PPP1R10               0.038   protein phosphatase 1, regulatory subunit 10 
ASXL1                 0.038   additional sex combs like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press