Guide to the Human Genome
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Name: XYLT1 Sequence: fasta or formatted (959aa) NCBI GI: 28269693
Description:

xylosyltransferase I

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         74           3
 C cysteine            1.6         15           1
 D aspartate           5.2         50           2
 E glutamate           5.0         48           2
 F phenylalanine       4.3         41           2
 G glycine             8.0         77          12
 H histidine           3.2         31           2
 I isoleucine          2.9         28           2
 K lysine              5.3         51           2
 L leucine             9.0         86           3
 M methionine          2.0         19           1
 N asparagine          4.1         39           2
 P proline             7.6         73           3
 Q glutamine           4.2         40           2
 R arginine            7.5         72           2
 S serine              6.4         61           2
 T threonine           5.1         49           1
 V valine              5.8         56           2
 W tryptophan          2.1         20           1
 Y tyrosine            3.0         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   xylosyltransferase I 
XYLT2                 0.470   xylosyltransferase II 
GCNT2                 0.027   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT4                 0.024   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
GCNT2                 0.024   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT2                 0.023   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT1                 0.022   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.022   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.022   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.022   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.022   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6...
GCNT7                 0.021   glucosaminyl (N-acetyl) transferase family member 7...
GCNT3                 0.019   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT6                 0.015   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.015   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.015   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
FOXD1                 0.014   forkhead box D1 
AVEN                  0.014   cell death regulator aven 
SHOX2                 0.014   short stature homeobox 2 isoform a 
PPP1R10               0.013   protein phosphatase 1, regulatory subunit 10 
HOXD9                 0.012   homeobox D9 
LOC100292082          0.012   PREDICTED: hypothetical protein XP_002345881 
FLJ10357              0.012   hypothetical protein LOC55701 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
POU4F1                0.011   POU domain, class 4, transcription factor 1 
LOC100290709          0.011   PREDICTED: hypothetical protein XP_002346752 
HMX3                  0.011   H6 family homeobox 3 
C6orf174              0.011   hypothetical protein LOC387104 
LOC100290372          0.011   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.011   PREDICTED: hypothetical protein XP_002342652 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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