Guide to the Human Genome
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Name: MESP2 Sequence: fasta or formatted (397aa) NCBI GI: 90403598
Description:

mesoderm posterior 2 homolog

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         43           3
 C cysteine            3.3         13           1
 D aspartate           2.8         11           1
 E glutamate           5.0         20           2
 F phenylalanine       1.3          5           1
 G glycine            11.8         47           2
 H histidine           2.0          8           1
 I isoleucine          1.5          6           1
 K lysine              0.8          3           1
 L leucine             8.6         34           2
 M methionine          0.5          2           1
 N asparagine          0.5          2           1
 P proline            12.3         49           3
 Q glutamine           9.6         38           1
 R arginine            7.1         28           3
 S serine             11.3         45           3
 T threonine           4.3         17           2
 V valine              2.3          9           2
 W tryptophan          3.0         12           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mesoderm posterior 2 homolog 
MESP1                 0.249   mesoderm posterior 1 
MSGN1                 0.066   mesogenin 1 
BHLHA9                0.042   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.042   PREDICTED: basic helix-loop-helix family, member a9...
NEUROG3               0.040   neurogenin 3 
BHLHA9                0.038   PREDICTED: basic helix-loop-helix family, member a9...
PTF1A                 0.038   pancreas specific transcription factor, 1a 
BHLHA15               0.037   basic helix-loop-helix family, member a15 
TAF4                  0.036   TBP-associated factor 4 
TCF15                 0.036   basic helix-loop-helix transcription factor 15 [Homo...
SCXB                  0.033   scleraxis homolog B 
SCXA                  0.033   scleraxis homolog A 
HAND1                 0.033   basic helix-loop-helix transcription factor HAND1 [Ho...
TCERG1                0.032   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.032   transcription elongation regulator 1 isoform 1 [Homo...
LOC100129654          0.031   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.031   PREDICTED: similar to transcription factor 23 [Homo...
NHLH1                 0.031   nescient helix loop helix 1 
LOC100129654          0.029   PREDICTED: similar to transcription factor 23 [Homo...
TCF21                 0.029   transcription factor 21 
TCF21                 0.029   transcription factor 21 
NEUROG2               0.029   neurogenin 2 
NEUROG1               0.029   neurogenin 1 
MYF6                  0.028   myogenic factor 6 
MSC                   0.028   musculin 
LOC100133305          0.027   PREDICTED: hypothetical protein 
LOC100133305          0.027   PREDICTED: hypothetical protein 
NHLH2                 0.027   nescient helix loop helix 2 
NHLH2                 0.027   nescient helix loop helix 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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