Guide to the Human Genome
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Name: ZIC2 Sequence: fasta or formatted (532aa) NCBI GI: 22547197
Description:

zinc finger protein of the cerebellum 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         71          15
 C cysteine            2.1         11           1
 D aspartate           2.3         12           1
 E glutamate           4.5         24           2
 F phenylalanine       4.5         24           2
 G glycine            14.5         77           6
 H histidine           7.7         41           9
 I isoleucine          1.1          6           1
 K lysine              4.1         22           2
 L leucine             5.1         27           2
 M methionine          2.6         14           1
 N asparagine          3.4         18           1
 P proline             7.1         38           2
 Q glutamine           4.1         22           2
 R arginine            3.8         20           2
 S serine             10.9         58           3
 T threonine           2.4         13           1
 V valine              3.8         20           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein of the cerebellum 2 
ZIC1                  0.566   zinc finger protein of the cerebellum 1 
ZIC3                  0.497   zinc finger protein of the cerebellum 3 
ZIC4                  0.343   zinc finger protein of the cerebellum 4 
ZIC5                  0.324   zinc finger protein of the cerebellum 5 
GLIS2                 0.151   GLIS family zinc finger 2 
GLIS3                 0.148   GLIS family zinc finger 3 isoform a 
GLIS3                 0.148   GLIS family zinc finger 3 isoform b 
GLI2                  0.143   GLI-Kruppel family member GLI2 
GLI1                  0.138   GLI family zinc finger 1 isoform 2 
GLI1                  0.138   GLI family zinc finger 1 isoform 1 
GLIS1                 0.138   GLIS family zinc finger 1 
GLI3                  0.137   GLI-Kruppel family member GLI3 
ZNF143                0.100   zinc finger protein 143 
ZNF76                 0.091   zinc finger protein 76 (expressed in testis) 
ZNF358                0.091   zinc finger protein 358 
ZNF410                0.089   zinc finger protein 410 
ZNF141                0.086   zinc finger protein 141 
ZNF552                0.086   zinc finger protein 552 
ZNF429                0.086   zinc finger protein 429 
ZNF253                0.086   zinc finger protein 253 
ZNF558                0.086   zinc finger protein 558 
ZNF776                0.084   zinc finger protein 776 
ZNF675                0.084   zinc finger protein 675 
ZNF814                0.084   zinc finger protein 814 
ZNF32                 0.084   zinc finger protein 32 
ZNF32                 0.084   zinc finger protein 32 
ZNF107                0.084   zinc finger protein 107 
ZNF107                0.084   zinc finger protein 107 
ZNF559                0.084   zinc finger protein 559 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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