Guide to the Human Genome
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Name: KRT1 Sequence: fasta or formatted (644aa) NCBI GI: 119395750
Description:

keratin 1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         24           1
 C cysteine            0.5          3           1
 D aspartate           4.2         27           1
 E glutamate           5.7         37           2
 F phenylalanine       3.3         21           1
 G glycine            22.7        146           7
 H histidine           0.6          4           1
 I isoleucine          4.7         30           2
 K lysine              4.3         28           2
 L leucine             6.5         42           2
 M methionine          1.2          8           1
 N asparagine          4.3         28           2
 P proline             1.1          7           2
 Q glutamine           5.6         36           2
 R arginine            5.9         38           3
 S serine             14.0         90           3
 T threonine           3.7         24           2
 V valine              4.0         26           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.7         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 1 
KRT2                  0.586   keratin 2 
KRT3                  0.534   keratin 3 
KRT5                  0.523   keratin 5 
KRT76                 0.523   keratin 76 
KRT77                 0.516   keratin 77 
KRT6B                 0.503   keratin 6B 
KRT6A                 0.502   keratin 6A 
KRT6C                 0.500   keratin 6C 
KRT4                  0.457   keratin 4 
KRT75                 0.444   keratin 75 
KRT79                 0.443   keratin 6L 
KRT73                 0.424   keratin 73 
KRT71                 0.421   keratin 71 
KRT74                 0.406   keratin 6 irs4 
KRT72                 0.396   keratin 72 isoform 1 
KRT72                 0.396   keratin 72 isoform 1 
KRT8                  0.356   keratin 8 
KRT84                 0.355   keratin, hair, basic, 4 
KRT78                 0.348   keratin 5b 
KRT7                  0.339   keratin 7 
KRT72                 0.307   keratin 72 isoform 2 
KRT82                 0.303   keratin 82 
KRT81                 0.299   keratin, hair, basic, 1 
KRT85                 0.295   keratin 85 
LOC100293351          0.293   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.293   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.293   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.293   keratin 86 
KRT83                 0.292   keratin 83 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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