Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ELN Sequence: fasta or formatted (677aa) NCBI GI: 126352700
Description:

elastin isoform b precursor

Referenced in:

Extracellular Matrix

Other entries for this name:
alt prot [692aa] elastin isoform c precursor
alt prot [724aa] elastin isoform a precursor
alt prot [711aa] elastin isoform d precursor
alt prot [705aa] elastin isoform e precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            21.6        146          10
 C cysteine            0.3          2           1
 D aspartate           0.1          1           1
 E glutamate           0.3          2           1
 F phenylalanine       2.1         14           1
 G glycine            28.8        195           2
 H histidine           0.1          1           1
 I isoleucine          2.5         17           1
 K lysine              4.9         33           1
 L leucine             6.2         42           5
 M methionine          0.1          1           1
 N asparagine          0.0          0           0
 P proline            13.0         88           2
 Q glutamine           0.9          6           1
 R arginine            1.2          8           1
 S serine              1.0          7           1
 T threonine           1.3          9           2
 V valine             13.3         90           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elastin isoform b precursor 
ELN                   0.989   elastin isoform c precursor 
ELN                   0.986   elastin isoform e precursor 
ELN                   0.980   elastin isoform d precursor 
ELN                   0.977   elastin isoform a precursor 
COL1A1                0.117   alpha 1 type I collagen preproprotein 
COL4A1                0.109   alpha 1 type IV collagen preproprotein 
COL3A1                0.108   collagen type III alpha 1 preproprotein 
COL4A5                0.101   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.101   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.101   type IV collagen alpha 5 isoform 3 precursor 
COL4A2                0.101   alpha 2 type IV collagen preproprotein 
COL2A1                0.099   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.099   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.095   alpha 2 type V collagen preproprotein 
COL1A2                0.095   alpha 2 type I collagen 
COL8A2                0.094   collagen, type VIII, alpha 2 
COL8A1                0.093   alpha 1 type VIII collagen precursor 
COL8A1                0.093   alpha 1 type VIII collagen precursor 
COL4A6                0.092   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.092   type IV alpha 6 collagen isoform B precursor 
COL22A1               0.089   collagen, type XXII, alpha 1 
COL10A1               0.089   type X collagen alpha 1 precursor 
COL7A1                0.086   alpha 1 type VII collagen precursor 
COL4A3                0.086   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.086   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.086   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.086   alpha 3 type IV collagen isoform 1 precursor 
COL16A1               0.086   alpha 1 type XVI collagen precursor 
COL24A1               0.085   collagen, type XXIV, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press