Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SCARF2 Sequence: fasta or formatted (865aa) NCBI GI: 33598937
Description:

scavenger receptor class F, member 2 isoform 2

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [870aa] scavenger receptor class F, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         95           4
 C cysteine            9.2         80           3
 D aspartate           3.4         29           1
 E glutamate           5.8         50           2
 F phenylalanine       1.4         12           1
 G glycine            10.2         88           2
 H histidine           3.1         27           2
 I isoleucine          0.9          8           1
 K lysine              3.7         32           2
 L leucine             5.9         51           7
 M methionine          0.6          5           1
 N asparagine          1.8         16           2
 P proline            11.9        103           4
 Q glutamine           3.2         28           2
 R arginine            9.6         83           3
 S serine              7.1         61           2
 T threonine           5.0         43           2
 V valine              3.7         32           3
 W tryptophan          1.4         12           2
 Y tyrosine            1.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scavenger receptor class F, member 2 isoform 2 [Homo... 
SCARF2                0.997   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF1                0.311   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.283   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.217   scavenger receptor class F, member 1 isoform 5 prec...
MEGF6                 0.142   EGF-like-domain, multiple 3 
MEGF11                0.141   multiple EGF-like-domains 11 
MEGF10                0.140   multiple EGF-like-domains 10 
PEAR1                 0.133   platelet endothelial aggregation receptor 1 
TNXB                  0.071   tenascin XB isoform 1 precursor 
LAMB2                 0.061   laminin, beta 2 precursor 
LAMA5                 0.061   laminin alpha 5 
TNC                   0.060   tenascin C precursor 
LAMB1                 0.056   laminin, beta 1 precursor 
LAMA2                 0.055   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.055   laminin alpha 2 subunit isoform a precursor 
LAMB4                 0.055   laminin, beta 4 
JAG2                  0.054   jagged 2 isoform b precursor 
USH2A                 0.054   usherin isoform B 
USH2A                 0.054   usherin isoform A 
NOTCH1                0.053   notch1 preproprotein 
JAG1                  0.053   jagged 1 precursor 
NOTCH3                0.050   Notch homolog 3 
JAG2                  0.050   jagged 2 isoform a precursor 
ODZ4                  0.049   odz, odd Oz/ten-m homolog 4 
DLL4                  0.049   delta-like 4 protein precursor 
LAMA1                 0.047   laminin, alpha 1 precursor 
NOTCH4                0.047   notch4 preproprotein 
LAMB3                 0.046   laminin, beta 3 precursor 
LAMB3                 0.046   laminin, beta 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press