Guide to the Human Genome
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Name: MEGF10 Sequence: fasta or formatted (1140aa) NCBI GI: 14192943
Description:

multiple EGF-like-domains 10

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         56           2
 C cysteine           13.0        148           2
 D aspartate           4.4         50           2
 E glutamate           3.9         45           1
 F phenylalanine       2.1         24           1
 G glycine            11.5        131           2
 H histidine           3.9         44           2
 I isoleucine          3.2         37           3
 K lysine              3.3         38           1
 L leucine             4.9         56           3
 M methionine          1.0         11           1
 N asparagine          5.5         63           2
 P proline             6.6         75           2
 Q glutamine           3.7         42           2
 R arginine            4.1         47           2
 S serine              8.4         96           5
 T threonine           6.3         72           2
 V valine              3.9         45           2
 W tryptophan          1.6         18           1
 Y tyrosine            3.7         42           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   multiple EGF-like-domains 10 
MEGF11                0.570   multiple EGF-like-domains 11 
PEAR1                 0.328   platelet endothelial aggregation receptor 1 
MEGF6                 0.269   EGF-like-domain, multiple 3 
NOTCH3                0.100   Notch homolog 3 
NOTCH1                0.099   notch1 preproprotein 
TNXB                  0.099   tenascin XB isoform 1 precursor 
SCARF1                0.097   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.097   scavenger receptor class F, member 1 isoform 1 precu...
SCARF2                0.097   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.097   scavenger receptor class F, member 2 isoform 2 [Homo...
NOTCH4                0.097   notch4 preproprotein 
NOTCH2                0.095   notch 2 preproprotein 
JAG2                  0.081   jagged 2 isoform a precursor 
JAG2                  0.079   jagged 2 isoform b precursor 
TNC                   0.076   tenascin C precursor 
JAG1                  0.075   jagged 1 precursor 
LAMA5                 0.071   laminin alpha 5 
SNED1                 0.070   6720455I24Rik homolog 
SCARF1                0.070   scavenger receptor class F, member 1 isoform 5 prec...
LAMA2                 0.061   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.061   laminin alpha 2 subunit isoform a precursor 
EYS                   0.059   eyes shut homolog isoform 1 
LAMA1                 0.058   laminin, alpha 1 precursor 
LAMB2                 0.057   laminin, beta 2 precursor 
LAMB4                 0.054   laminin, beta 4 
LAMB1                 0.053   laminin, beta 1 precursor 
DLL1                  0.049   delta-like 1 
VWDE                  0.047   von Willebrand factor D and EGF domains 
CRB1                  0.047   crumbs homolog 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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