USH2A 13912

Name: USH2A	Sequence: fasta or formatted (5202aa)		NCBI GI: 219842266
Description: usherin isoform B		Referenced in: Protein Composition and Structure Fibronectin Family Auditory and Vestibular Functions Netrins and Laminins
Other entries for this name: alt prot [1546aa] usherin isoform A
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 253 3 C cysteine 3.7 194 2 D aspartate 3.5 182 2 E glutamate 5.2 269 3 F phenylalanine 3.7 194 3 G glycine 7.2 373 4 H histidine 2.5 131 2 I isoleucine 5.3 275 3 K lysine 3.9 202 3 L leucine 8.3 431 3 M methionine 1.5 78 3 N asparagine 5.2 273 2 P proline 7.2 373 3 Q glutamine 4.7 242 2 R arginine 4.0 210 2 S serine 9.2 481 3 T threonine 7.8 405 3 V valine 6.5 338 2 W tryptophan 1.6 83 1 Y tyrosine 4.1 215 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 usherin isoform B USH2A 0.302 usherin isoform A LAMA5 0.034 laminin alpha 5 LAMA3 0.028 laminin alpha 3 subunit isoform 1 LAMA3 0.028 laminin alpha 3 subunit isoform 3 LAMB3 0.025 laminin, beta 3 precursor LAMB3 0.025 laminin, beta 3 precursor LAMB3 0.025 laminin, beta 3 precursor LAMB1 0.023 laminin, beta 1 precursor LAMA2 0.023 laminin alpha 2 subunit isoform b precursor LAMA2 0.023 laminin alpha 2 subunit isoform a precursor LAMB2 0.023 laminin, beta 2 precursor LAMA1 0.022 laminin, alpha 1 precursor PTPRQ 0.022 protein tyrosine phosphatase, receptor type, Q [Hom... LAMB4 0.021 laminin, beta 4 LAMC1 0.020 laminin, gamma 1 precursor LAMC3 0.019 laminin, gamma 3 precursor SDK2 0.017 sidekick 2 NTN4 0.016 netrin 4 NTN1 0.016 netrin 1 SDK1 0.016 sidekick 1 NTN3 0.013 netrin 3 MEGF9 0.013 multiple EGF-like-domains 9 MEGF11 0.012 multiple EGF-like-domains 11 PTPRD 0.011 protein tyrosine phosphatase, receptor type, D isofor... PTPRD 0.011 protein tyrosine phosphatase, receptor type, D isofo... MEGF10 0.011 multiple EGF-like-domains 10 PEAR1 0.011 platelet endothelial aggregation receptor 1 FNDC3B 0.011 fibronectin type III domain containing 3B FNDC3B 0.011 fibronectin type III domain containing 3B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.