Guide to the Human Genome
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Name: LAMB3 Sequence: fasta or formatted (1172aa) NCBI GI: 62868217
Description:

laminin, beta 3 precursor

Referenced in:

Netrins and Laminins

Other entries for this name:
alt mRNA [1172aa] laminin, beta 3 precursor
alt mRNA [1172aa] laminin, beta 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        106           3
 C cysteine            5.8         68           2
 D aspartate           5.2         61           1
 E glutamate           6.3         74           3
 F phenylalanine       2.6         30           2
 G glycine             7.7         90           5
 H histidine           1.8         21           1
 I isoleucine          2.3         27           1
 K lysine              2.6         30           1
 L leucine             9.0        105           2
 M methionine          2.4         28           2
 N asparagine          2.8         33           2
 P proline             5.5         64           2
 Q glutamine           8.5        100           2
 R arginine            9.0        105           2
 S serine              6.8         80           3
 T threonine           4.7         55           1
 V valine              5.2         61           2
 W tryptophan          0.9         10           2
 Y tyrosine            2.0         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin, beta 3 precursor 
LAMB3                 1.000   laminin, beta 3 precursor 
LAMB3                 1.000   laminin, beta 3 precursor 
LAMB2                 0.185   laminin, beta 2 precursor 
LAMB4                 0.176   laminin, beta 4 
LAMB1                 0.167   laminin, beta 1 precursor 
LAMA5                 0.125   laminin alpha 5 
NTN4                  0.117   netrin 4 
USH2A                 0.114   usherin isoform B 
USH2A                 0.114   usherin isoform A 
LAMC1                 0.105   laminin, gamma 1 precursor 
LAMA3                 0.102   laminin alpha 3 subunit isoform 1 
LAMA3                 0.102   laminin alpha 3 subunit isoform 3 
LAMC3                 0.095   laminin, gamma 3 precursor 
NTN1                  0.083   netrin 1 
LAMA1                 0.079   laminin, alpha 1 precursor 
LAMA2                 0.073   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.073   laminin alpha 2 subunit isoform a precursor 
NTN3                  0.071   netrin 3 
NTNG1                 0.057   netrin G1 isoform 1 
NTN5                  0.055   netrin 5 
NTNG2                 0.053   netrin G2 
LAMC2                 0.047   laminin, gamma 2 isoform a precursor 
LAMC2                 0.046   laminin, gamma 2 isoform b precursor 
HSPG2                 0.040   heparan sulfate proteoglycan 2 
MEGF6                 0.038   EGF-like-domain, multiple 3 
MEGF9                 0.037   multiple EGF-like-domains 9 
SCARF2                0.036   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.036   scavenger receptor class F, member 2 isoform 2 [Homo...
PEAR1                 0.035   platelet endothelial aggregation receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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