TNC 5472

Name: TNC	Sequence: fasta or formatted (2201aa)		NCBI GI: 153946395
Description: tenascin C precursor		Referenced in: Fibronectin Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 143 3 C cysteine 4.5 99 2 D aspartate 6.1 134 2 E glutamate 8.1 179 2 F phenylalanine 3.0 67 2 G glycine 8.9 195 3 H histidine 1.8 39 1 I isoleucine 4.5 98 2 K lysine 3.7 82 2 L leucine 7.6 167 2 M methionine 1.0 23 1 N asparagine 4.3 94 2 P proline 5.1 112 2 Q glutamine 3.5 76 2 R arginine 5.3 117 2 S serine 6.3 139 2 T threonine 8.6 189 3 V valine 7.0 154 3 W tryptophan 1.3 28 1 Y tyrosine 3.0 66 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tenascin C precursor TNXB 0.201 tenascin XB isoform 1 precursor TNR 0.137 tenascin R TNN 0.114 tenascin N TNXB 0.109 tenascin XB isoform 2 FN1 0.078 fibronectin 1 isoform 1 preproprotein FN1 0.078 fibronectin 1 isoform 2 preproprotein FN1 0.075 fibronectin 1 isoform 6 preproprotein FN1 0.074 fibronectin 1 isoform 3 preproprotein FN1 0.074 fibronectin 1 isoform 4 preproprotein FN1 0.073 fibronectin 1 isoform 5 preproprotein MEGF10 0.047 multiple EGF-like-domains 10 MEGF11 0.046 multiple EGF-like-domains 11 ODZ2 0.046 odz, odd Oz/ten-m homolog 2 ODZ3 0.046 odz, odd Oz/ten-m homolog 3 NOTCH2 0.045 notch 2 preproprotein JAG2 0.045 jagged 2 isoform b precursor JAG1 0.044 jagged 1 precursor ODZ4 0.044 odz, odd Oz/ten-m homolog 4 NOTCH1 0.043 notch1 preproprotein MEGF6 0.043 EGF-like-domain, multiple 3 JAG2 0.043 jagged 2 isoform a precursor PEAR1 0.042 platelet endothelial aggregation receptor 1 NOTCH3 0.041 Notch homolog 3 SNED1 0.041 6720455I24Rik homolog ODZ1 0.041 odz, odd Oz/ten-m homolog 1 isoform 3 ODZ1 0.041 odz, odd Oz/ten-m homolog 1 isoform 2 ODZ1 0.041 odz, odd Oz/ten-m homolog 1 isoform 1 COL12A1 0.039 collagen, type XII, alpha 1 short isoform precursor ... COL12A1 0.039 collagen, type XII, alpha 1 long isoform precursor [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.