USH2A 13910

Name: USH2A	Sequence: fasta or formatted (1546aa)		NCBI GI: 219842259
Description: usherin isoform A		Referenced in: Fibronectin Family Auditory and Vestibular Functions Netrins and Laminins
Other entries for this name: alt prot [5202aa] usherin isoform B
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 69 3 C cysteine 6.6 102 1 D aspartate 4.1 64 2 E glutamate 4.2 65 2 F phenylalanine 4.9 75 2 G glycine 7.2 112 4 H histidine 2.9 45 1 I isoleucine 4.7 72 3 K lysine 4.0 62 2 L leucine 7.4 115 2 M methionine 1.2 19 2 N asparagine 6.1 94 2 P proline 6.5 100 3 Q glutamine 5.8 89 2 R arginine 4.1 64 2 S serine 8.8 136 3 T threonine 7.1 110 2 V valine 5.5 85 2 W tryptophan 0.9 14 1 Y tyrosine 3.5 54 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 usherin isoform A USH2A 0.998 usherin isoform B LAMA5 0.113 laminin alpha 5 LAMA3 0.092 laminin alpha 3 subunit isoform 1 LAMA3 0.092 laminin alpha 3 subunit isoform 3 LAMB3 0.084 laminin, beta 3 precursor LAMB3 0.084 laminin, beta 3 precursor LAMB3 0.084 laminin, beta 3 precursor LAMB1 0.077 laminin, beta 1 precursor LAMA2 0.077 laminin alpha 2 subunit isoform b precursor LAMA2 0.077 laminin alpha 2 subunit isoform a precursor LAMB2 0.075 laminin, beta 2 precursor LAMA1 0.073 laminin, alpha 1 precursor LAMB4 0.069 laminin, beta 4 LAMC1 0.067 laminin, gamma 1 precursor LAMC3 0.063 laminin, gamma 3 precursor NTN4 0.053 netrin 4 NTN1 0.052 netrin 1 NTN3 0.042 netrin 3 MEGF9 0.042 multiple EGF-like-domains 9 MEGF11 0.040 multiple EGF-like-domains 11 MEGF10 0.037 multiple EGF-like-domains 10 PEAR1 0.037 platelet endothelial aggregation receptor 1 NTN5 0.036 netrin 5 MEGF6 0.036 EGF-like-domain, multiple 3 NTNG1 0.031 netrin G1 isoform 1 NTNG2 0.031 netrin G2 SCARF2 0.031 scavenger receptor class F, member 2 isoform 1 [Homo... SCARF2 0.031 scavenger receptor class F, member 2 isoform 2 [Homo... SCARF1 0.028 scavenger receptor class F, member 1 isoform 3 precu... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.