Guide to the Human Genome
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Name: TNXB Sequence: fasta or formatted (4242aa) NCBI GI: 188528648
Description:

tenascin XB isoform 1 precursor

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [673aa] tenascin XB isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0        210           2
 C cysteine            2.9        123           2
 D aspartate           5.8        248           2
 E glutamate           7.5        319           3
 F phenylalanine       2.6        112           1
 G glycine            11.4        485           3
 H histidine           2.1         87           2
 I isoleucine          1.5         62           2
 K lysine              2.8        120           2
 L leucine             7.8        332           3
 M methionine          1.3         55           2
 N asparagine          1.4         58           1
 P proline             9.9        420           5
 Q glutamine           4.2        180           2
 R arginine            6.7        283           2
 S serine              7.0        296           3
 T threonine           7.4        316           3
 V valine              8.6        366           2
 W tryptophan          1.2         51           2
 Y tyrosine            2.8        119           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tenascin XB isoform 1 precursor 
TNXB                  0.154   tenascin XB isoform 2 
TNC                   0.104   tenascin C precursor 
TNR                   0.057   tenascin R 
TNN                   0.051   tenascin N 
FN1                   0.035   fibronectin 1 isoform 1 preproprotein 
FN1                   0.034   fibronectin 1 isoform 3 preproprotein 
FN1                   0.033   fibronectin 1 isoform 4 preproprotein 
FN1                   0.032   fibronectin 1 isoform 2 preproprotein 
FN1                   0.032   fibronectin 1 isoform 6 preproprotein 
MEGF11                0.030   multiple EGF-like-domains 11 
MEGF10                0.030   multiple EGF-like-domains 10 
MEGF6                 0.029   EGF-like-domain, multiple 3 
FN1                   0.029   fibronectin 1 isoform 5 preproprotein 
NOTCH1                0.029   notch1 preproprotein 
NOTCH3                0.028   Notch homolog 3 
COL12A1               0.027   collagen, type XII, alpha 1 long isoform precursor [...
PEAR1                 0.027   platelet endothelial aggregation receptor 1 
NOTCH2                0.026   notch 2 preproprotein 
NOTCH4                0.026   notch4 preproprotein 
ODZ2                  0.024   odz, odd Oz/ten-m homolog 2 
ODZ3                  0.024   odz, odd Oz/ten-m homolog 3 
JAG1                  0.024   jagged 1 precursor 
SNED1                 0.023   6720455I24Rik homolog 
JAG2                  0.022   jagged 2 isoform a precursor 
ODZ4                  0.022   odz, odd Oz/ten-m homolog 4 
JAG2                  0.021   jagged 2 isoform b precursor 
ODZ1                  0.020   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.020   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.020   odz, odd Oz/ten-m homolog 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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