Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745228
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
(488 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 1004 0.0
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 756 0.0
gi|239756297 PREDICTED: hypothetical protein [Homo sapiens] 695 0.0
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 64 3e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 64 3e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 64 3e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens] 62 1e-09
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 61 2e-09
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 61 2e-09
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 61 2e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 60 3e-09
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 59 8e-09
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 1e-08
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 58 2e-08
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 58 2e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 3e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 56 6e-08
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 56 8e-08
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 56 8e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 1e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 1e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 55 1e-07
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 55 1e-07
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 55 1e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 55 2e-07
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 54 2e-07
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 54 4e-07
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 53 5e-07
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 53 5e-07
gi|19924099 synapsin I isoform Ia [Homo sapiens] 53 7e-07
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 1004 bits (2597), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSNPLPL 240
GQETECQDDCFLGKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSNPLPL
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSNPLPL 240
Query: 241 TTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 300
TTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP
Sbjct: 241 TTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 300
Query: 301 QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA
Sbjct: 301 QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG
Sbjct: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
Query: 421 TRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEYSMKLFGVYTKLQD 480
TRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEYSMKLFGVYTKLQD
Sbjct: 421 TRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEYSMKLFGVYTKLQD 480
Query: 481 SLFRGTDA 488
SLFRGTDA
Sbjct: 481 SLFRGTDA 488
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 756 bits (1953), Expect = 0.0
Identities = 414/595 (69%), Positives = 430/595 (72%), Gaps = 130/595 (21%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGP------------LLGHLLELAKDALKLPD 228
GQETECQDDCFLGKSDLQNFEELREPAGTGP +L + L + + ++P
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPPFVLTQSSRPTDMLLNSLATSLSSRRMPS 240
Query: 229 D---------HLHALSNPLPLTTTAG--------------VVTGLPEVRGAPNVHRLPP- 264
+ + S PL L ++ G V GLP + A + RLPP
Sbjct: 241 SCPMTIFMRCRIRSRSPPL-LGSSLGCPRSGAPRMFIVYHVAAGLPILPPAGHTLRLPPR 299
Query: 265 ------------------------------PPSL-----RTPTP--------GLTEGGGT 281
PPSL + TP G+ GG
Sbjct: 300 SPPRLGRAPHFNGPPAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQ 359
Query: 282 GLPS-----------------------KQRRGPSPK--------TELGG----------- 299
GLP ++R P P TE GG
Sbjct: 360 GLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGP 419
Query: 300 --------PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 351
PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE
Sbjct: 420 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 479
Query: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP
Sbjct: 480 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 539
Query: 412 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE 466
RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE
Sbjct: 540 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSE 594
>gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 525
Score = 695 bits (1794), Expect = 0.0
Identities = 362/437 (82%), Positives = 371/437 (84%), Gaps = 34/437 (7%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGG DVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSN---- 236
GQETECQDDCFLGKSDLQNFEELREPAGTGP L E + +A LP L A+ +
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRE-SSEAYPLP--QLGAIGSGQAV 237
Query: 237 ---PLPLTTTA--------GVVTGLPEVRGAPNVH---------RLPPPPSL-------R 269
P LT ++ + T L R + R PP L R
Sbjct: 238 AYGPFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPR 297
Query: 270 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 329
TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL
Sbjct: 298 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 357
Query: 330 GVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRS 389
GVQIGRVR PLGSALPYPARSELAPPGA+DALSPDPERPCPGTRGVRSGREGLLSPAPRS
Sbjct: 358 GVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRS 417
Query: 390 ALGETAPTAQFTFRKVR 406
ALGETAPTAQFTFRK R
Sbjct: 418 ALGETAPTAQFTFRKRR 434
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 63.9 bits (154), Expect = 3e-10
Identities = 75/232 (32%), Positives = 91/232 (39%), Gaps = 51/232 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPT-PGLT-EGGGTGLPSKQ----RRGPSPKTELGGPQG 302
G+P + G P R P SL P PG + E G GL K RGP+ GP+G
Sbjct: 710 GVPGLPGYPG--RQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRG 767
Query: 303 SLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RRHLG 330
+ G++ G G PGPQG GPP +D R +G
Sbjct: 768 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 827
Query: 331 VQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL-SP 385
Q G+ P G P A E P G R P P P PG +G+ +G+EG P
Sbjct: 828 FQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDP 883
Query: 386 APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 435
P A G+ P F R PG G G G PPGPA S RG
Sbjct: 884 GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 935
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG--GPQGSLGR 306
G P G+P + P ++ P E G +G P + P PK G GP+G+ G
Sbjct: 1127 GEPGESGSPGIQG---EPGVKGPRGERGEKGESGQPGEPGP-PGPKGPTGDDGPKGNPGP 1182
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G GP +GGP +D G P P P E PPG P
Sbjct: 1183 VGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP--- 1236
Query: 367 RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSA 418
PG+ G + G+ P A G+T P P G RG G A
Sbjct: 1237 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1296
Query: 419 AGTRSPPGP 427
G PPGP
Sbjct: 1297 TGQAGPPGP 1305
Score = 50.4 bits (119), Expect = 4e-06
Identities = 62/203 (30%), Positives = 75/203 (36%), Gaps = 43/203 (21%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 334
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 911 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 968
Query: 335 --------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPA 386
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 969 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1022
Query: 387 PRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESARSRGPRP 438
P +G P Q PG RG GA GTR PPGP GP
Sbjct: 1023 PPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGP-- 1077
Query: 439 GWDTPEKGDHLLSFTMQEDVGPL 461
+ EKG+ DVGP+
Sbjct: 1078 ---SGEKGE-------TGDVGPM 1090
Score = 48.1 bits (113), Expect = 2e-05
Identities = 57/215 (26%), Positives = 67/215 (31%), Gaps = 36/215 (16%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELGGPQ 301
G +G H P PP P G G P + +G GP
Sbjct: 1007 GQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1066
Query: 302 GSLGRASLSGP---------FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 352
G +G L GP GP GPP P G A P A
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPG---------------PRGPAGPNGADGPQ 1111
Query: 353 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 412
PPG L P E+ PG G G +G P + GE + PPGP+
Sbjct: 1112 GPPGGVGNLGPPGEKGEPGESG-SPGIQG--EPGVKGPRGERGEKGESGQPGEPGPPGPK 1168
Query: 413 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
G G + PGP GP PG P D
Sbjct: 1169 -GPTGDDGPKGNPGPVGFPGDPGP-PGEGGPRGQD 1201
Score = 44.3 bits (103), Expect = 3e-04
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 49/220 (22%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTG------------------LPSKQRRG 290
GLP GAP PP SL P + GG G L + G
Sbjct: 349 GLPGSDGAPG----PPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG 404
Query: 291 PSPKTELGGPQGSLGRASLSG---------PFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 341
P T GP G G L G P GP GPP + R G
Sbjct: 405 PMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR------------G 452
Query: 342 SALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 399
A AR PG + D PG +G R +G +GL P P GE +
Sbjct: 453 RAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGL--PGPPGEDGERGDDGE 510
Query: 400 FTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
R + GPRG G G PPG +GP+
Sbjct: 511 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPK 550
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/171 (28%), Positives = 62/171 (36%), Gaps = 21/171 (12%)
Query: 273 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 332
PG T G P+ + GP L G G GR +G GP GPP
Sbjct: 1261 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPG--------- 1310
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
+ +R G A+ E PG + P E+ G RG+ G +G SP + +G
Sbjct: 1311 LPGLRGDAG------AKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1361
Query: 393 ETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
+ PGP G A G P GP +GP PG P
Sbjct: 1362 IPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGP-PGHPGP 1410
Score = 39.3 bits (90), Expect = 0.008
Identities = 58/214 (27%), Positives = 74/214 (34%), Gaps = 38/214 (17%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-------------GPSPKTELGGP 300
RG LP PP E G GLP + GP + GP
Sbjct: 487 RGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGP 546
Query: 301 QG---SLGRASLSGPFG----------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 347
QG SLG GP G PGPQG + + G +P GS P
Sbjct: 547 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP-GSDGPPG 605
Query: 348 ARSELAPPGARDALSPD-PERPC--PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 404
+ PPG + P P+ P PG RGV+ G +G+ R G + F
Sbjct: 606 HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVK-GVDGI-----RGLKGHKGEKGEDGFPG 659
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 436
+ G +G G + G+R GP GP
Sbjct: 660 FKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP 693
Score = 36.2 bits (82), Expect = 0.069
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 59/220 (26%)
Query: 266 PSLRTPTPGLTEG---------------GGTGLPSKQRRGPSPKTELG----GPQGSLGR 306
P + PTPG E G GL K +G E G GP G G
Sbjct: 263 PQSQDPTPGEEEEILESSLLPPLEEAAHGPRGL--KGEKGEPAVLEPGMLVEGPPGPEGP 320
Query: 307 ASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP------- 355
A L GP G PGP G P R GR +P P P + L P
Sbjct: 321 AGLIGPPGIQGNPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLMLPFRFGSGG 374
Query: 356 GARDALSPDPE--------------RPCPGTRGVRSGREGLL----SPAPRSALGETAPT 397
G + + E R PG G +GR G L SP + G+ P
Sbjct: 375 GDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY-TGRPGPLGQPGSPGLKGESGDLGPQ 433
Query: 398 AQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 435
+ + PPG G G A G R PG RG
Sbjct: 434 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRG 473
Score = 33.5 bits (75), Expect = 0.45
Identities = 50/179 (27%), Positives = 63/179 (35%), Gaps = 43/179 (24%)
Query: 249 GLPEVRG---APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GLP +RG A P L P E G GLP Q SP G +G +G
Sbjct: 1310 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG---SP-----GQKGEMG 1361
Query: 306 RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
SGP GP GGPP LP PA P GA+ A P
Sbjct: 1362 IPGASGPIGP---GGPP--------------------GLPGPA----GPKGAKGATGPGG 1394
Query: 366 ERPCPGTRGVRSGREG----LLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
+ G +G G G ++ P P +T + + + P GGA + G
Sbjct: 1395 PKGEKGVQG-PPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1452
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 63.9 bits (154), Expect = 3e-10
Identities = 75/232 (32%), Positives = 91/232 (39%), Gaps = 51/232 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPT-PGLT-EGGGTGLPSKQ----RRGPSPKTELGGPQG 302
G+P + G P R P SL P PG + E G GL K RGP+ GP+G
Sbjct: 689 GVPGLPGYPG--RQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRG 746
Query: 303 SLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RRHLG 330
+ G++ G G PGPQG GPP +D R +G
Sbjct: 747 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 806
Query: 331 VQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL-SP 385
Q G+ P G P A E P G R P P P PG +G+ +G+EG P
Sbjct: 807 FQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDP 862
Query: 386 APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 435
P A G+ P F R PG G G G PPGPA S RG
Sbjct: 863 GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 914
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG--GPQGSLGR 306
G P G+P + P ++ P E G +G P + P PK G GP+G+ G
Sbjct: 1106 GEPGESGSPGIQG---EPGVKGPRGERGEKGESGQPGEPGP-PGPKGPTGDDGPKGNPGP 1161
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G GP +GGP +D G P P P E PPG P
Sbjct: 1162 VGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP--- 1215
Query: 367 RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSA 418
PG+ G + G+ P A G+T P P G RG G A
Sbjct: 1216 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1275
Query: 419 AGTRSPPGP 427
G PPGP
Sbjct: 1276 TGQAGPPGP 1284
Score = 50.4 bits (119), Expect = 4e-06
Identities = 62/203 (30%), Positives = 75/203 (36%), Gaps = 43/203 (21%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 334
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 890 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 947
Query: 335 --------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPA 386
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 948 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1001
Query: 387 PRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESARSRGPRP 438
P +G P Q PG RG GA GTR PPGP GP
Sbjct: 1002 PPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGP-- 1056
Query: 439 GWDTPEKGDHLLSFTMQEDVGPL 461
+ EKG+ DVGP+
Sbjct: 1057 ---SGEKGE-------TGDVGPM 1069
Score = 48.1 bits (113), Expect = 2e-05
Identities = 57/215 (26%), Positives = 67/215 (31%), Gaps = 36/215 (16%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELGGPQ 301
G +G H P PP P G G P + +G GP
Sbjct: 986 GQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1045
Query: 302 GSLGRASLSGP---------FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 352
G +G L GP GP GPP P G A P A
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPG---------------PRGPAGPNGADGPQ 1090
Query: 353 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 412
PPG L P E+ PG G G +G P + GE + PPGP+
Sbjct: 1091 GPPGGVGNLGPPGEKGEPGESG-SPGIQG--EPGVKGPRGERGEKGESGQPGEPGPPGPK 1147
Query: 413 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
G G + PGP GP PG P D
Sbjct: 1148 -GPTGDDGPKGNPGPVGFPGDPGP-PGEGGPRGQD 1180
Score = 44.3 bits (103), Expect = 3e-04
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 49/220 (22%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTG------------------LPSKQRRG 290
GLP GAP PP SL P + GG G L + G
Sbjct: 328 GLPGSDGAPG----PPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG 383
Query: 291 PSPKTELGGPQGSLGRASLSG---------PFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 341
P T GP G G L G P GP GPP + R G
Sbjct: 384 PMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR------------G 431
Query: 342 SALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 399
A AR PG + D PG +G R +G +GL P P GE +
Sbjct: 432 RAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGL--PGPPGEDGERGDDGE 489
Query: 400 FTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
R + GPRG G G PPG +GP+
Sbjct: 490 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPK 529
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/171 (28%), Positives = 62/171 (36%), Gaps = 21/171 (12%)
Query: 273 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 332
PG T G P+ + GP L G G GR +G GP GPP
Sbjct: 1240 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPG--------- 1289
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
+ +R G A+ E PG + P E+ G RG+ G +G SP + +G
Sbjct: 1290 LPGLRGDAG------AKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1340
Query: 393 ETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
+ PGP G A G P GP +GP PG P
Sbjct: 1341 IPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGP-PGHPGP 1389
Score = 39.3 bits (90), Expect = 0.008
Identities = 58/214 (27%), Positives = 74/214 (34%), Gaps = 38/214 (17%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-------------GPSPKTELGGP 300
RG LP PP E G GLP + GP + GP
Sbjct: 466 RGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGP 525
Query: 301 QG---SLGRASLSGPFG----------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 347
QG SLG GP G PGPQG + + G +P GS P
Sbjct: 526 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP-GSDGPPG 584
Query: 348 ARSELAPPGARDALSPD-PERPC--PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 404
+ PPG + P P+ P PG RGV+ G +G+ R G + F
Sbjct: 585 HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVK-GVDGI-----RGLKGHKGEKGEDGFPG 638
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 436
+ G +G G + G+R GP GP
Sbjct: 639 FKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP 672
Score = 35.8 bits (81), Expect = 0.090
Identities = 48/168 (28%), Positives = 57/168 (33%), Gaps = 38/168 (22%)
Query: 299 GPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
GP G G A L GP G PGP G P R GR +P P P + L
Sbjct: 292 GPPGPEGPAGLIGPPGIQGNPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLML 345
Query: 355 P-------GARDALSPDPE--------------RPCPGTRGVRSGREGLL----SPAPRS 389
P G + + E R PG G +GR G L SP +
Sbjct: 346 PFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY-TGRPGPLGQPGSPGLKG 404
Query: 390 ALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 435
G+ P + + PPG G G A G R PG RG
Sbjct: 405 ESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRG 452
Score = 33.5 bits (75), Expect = 0.45
Identities = 50/179 (27%), Positives = 63/179 (35%), Gaps = 43/179 (24%)
Query: 249 GLPEVRG---APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GLP +RG A P L P E G GLP Q SP G +G +G
Sbjct: 1289 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG---SP-----GQKGEMG 1340
Query: 306 RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
SGP GP GGPP LP PA P GA+ A P
Sbjct: 1341 IPGASGPIGP---GGPP--------------------GLPGPA----GPKGAKGATGPGG 1373
Query: 366 ERPCPGTRGVRSGREG----LLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
+ G +G G G ++ P P +T + + + P GGA + G
Sbjct: 1374 PKGEKGVQG-PPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1431
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 63.9 bits (154), Expect = 3e-10
Identities = 75/232 (32%), Positives = 91/232 (39%), Gaps = 51/232 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPT-PGLT-EGGGTGLPSKQ----RRGPSPKTELGGPQG 302
G+P + G P R P SL P PG + E G GL K RGP+ GP+G
Sbjct: 796 GVPGLPGYPG--RQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRG 853
Query: 303 SLGRASLSGPFG-------------PGPQG-----------GPPSRD--------RRHLG 330
+ G++ G G PGPQG GPP +D R +G
Sbjct: 854 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 913
Query: 331 VQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL-SP 385
Q G+ P G P A E P G R P P P PG +G+ +G+EG P
Sbjct: 914 FQ-GKTGPPGPPGVVGPQGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDP 969
Query: 386 APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRG 435
P A G+ P F R PG G G G PPGPA S RG
Sbjct: 970 GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 1021
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG--GPQGSLGR 306
G P G+P + P ++ P E G +G P + P PK G GP+G+ G
Sbjct: 1213 GEPGESGSPGIQG---EPGVKGPRGERGEKGESGQPGEPGP-PGPKGPTGDDGPKGNPGP 1268
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G GP +GGP +D G P P P E PPG P
Sbjct: 1269 VGFPGDPGPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP--- 1322
Query: 367 RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSA 418
PG+ G + G+ P A G+T P P G RG G A
Sbjct: 1323 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1382
Query: 419 AGTRSPPGP 427
G PPGP
Sbjct: 1383 TGQAGPPGP 1391
Score = 50.4 bits (119), Expect = 4e-06
Identities = 62/203 (30%), Positives = 75/203 (36%), Gaps = 43/203 (21%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 334
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 997 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 1054
Query: 335 --------RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPA 386
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 1055 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1108
Query: 387 PRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR---SPPGPAESARSRGPRP 438
P +G P Q PG RG GA GTR PPGP GP
Sbjct: 1109 PPGPIG---PVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGP-- 1163
Query: 439 GWDTPEKGDHLLSFTMQEDVGPL 461
+ EKG+ DVGP+
Sbjct: 1164 ---SGEKGE-------TGDVGPM 1176
Score = 48.1 bits (113), Expect = 2e-05
Identities = 57/215 (26%), Positives = 67/215 (31%), Gaps = 36/215 (16%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELGGPQ 301
G +G H P PP P G G P + +G GP
Sbjct: 1093 GQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1152
Query: 302 GSLGRASLSGP---------FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 352
G +G L GP GP GPP P G A P A
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPG---------------PRGPAGPNGADGPQ 1197
Query: 353 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 412
PPG L P E+ PG G G +G P + GE + PPGP+
Sbjct: 1198 GPPGGVGNLGPPGEKGEPGESG-SPGIQG--EPGVKGPRGERGEKGESGQPGEPGPPGPK 1254
Query: 413 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
G G + PGP GP PG P D
Sbjct: 1255 -GPTGDDGPKGNPGPVGFPGDPGP-PGEGGPRGQD 1287
Score = 44.3 bits (103), Expect = 3e-04
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 49/220 (22%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTG------------------LPSKQRRG 290
GLP GAP PP SL P + GG G L + G
Sbjct: 435 GLPGSDGAPG----PPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPG 490
Query: 291 PSPKTELGGPQGSLGRASLSG---------PFGPGPQGGPPSRDRRHLGVQIGRVRVPLG 341
P T GP G G L G P GP GPP + R G
Sbjct: 491 PMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR------------G 538
Query: 342 SALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 399
A AR PG + D PG +G R +G +GL P P GE +
Sbjct: 539 RAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGL--PGPPGEDGERGDDGE 596
Query: 400 FTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
R + GPRG G G PPG +GP+
Sbjct: 597 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPK 636
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/171 (28%), Positives = 62/171 (36%), Gaps = 21/171 (12%)
Query: 273 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 332
PG T G P+ + GP L G G GR +G GP GPP
Sbjct: 1347 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPG--------- 1396
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
+ +R G A+ E PG + P E+ G RG+ G +G SP + +G
Sbjct: 1397 LPGLRGDAG------AKGEKGHPGLIGLIGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1447
Query: 393 ETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
+ PGP G A G P GP +GP PG P
Sbjct: 1448 IPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGP-PGHPGP 1496
Score = 39.3 bits (90), Expect = 0.008
Identities = 60/209 (28%), Positives = 70/209 (33%), Gaps = 44/209 (21%)
Query: 262 LPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG----GPQGSLGRASLSGPFG--- 314
L P S T G G GL K +G E G GP G G A L GP G
Sbjct: 360 LGPALSAETAHSGAAAHGPRGL--KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQG 417
Query: 315 -PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP-------GARDALSPDPE 366
PGP G P R GR +P P P + L P G + + E
Sbjct: 418 NPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQE 471
Query: 367 --------------RPCPGTRGVRSGREGLL----SPAPRSALGETAPTAQFTFRKVRNP 408
R PG G +GR G L SP + G+ P + + P
Sbjct: 472 AQAQAILQQARLALRGPPGPMGY-TGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGP 530
Query: 409 PGPRG--GAMSAAGTRSPPGPAESARSRG 435
PG G G A G R PG RG
Sbjct: 531 PGKAGRRGRAGADGARGMPGDPGVKGDRG 559
Score = 39.3 bits (90), Expect = 0.008
Identities = 58/214 (27%), Positives = 74/214 (34%), Gaps = 38/214 (17%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-------------GPSPKTELGGP 300
RG LP PP E G GLP + GP + GP
Sbjct: 573 RGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGP 632
Query: 301 QG---SLGRASLSGPFG----------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 347
QG SLG GP G PGPQG + + G +P GS P
Sbjct: 633 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP-GSDGPPG 691
Query: 348 ARSELAPPGARDALSPD-PERPC--PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 404
+ PPG + P P+ P PG RGV+ G +G+ R G + F
Sbjct: 692 HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVK-GVDGI-----RGLKGHKGEKGEDGFPG 745
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP 436
+ G +G G + G+R GP GP
Sbjct: 746 FKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP 779
Score = 33.5 bits (75), Expect = 0.45
Identities = 50/179 (27%), Positives = 63/179 (35%), Gaps = 43/179 (24%)
Query: 249 GLPEVRG---APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GLP +RG A P L P E G GLP Q SP G +G +G
Sbjct: 1396 GLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQG---SP-----GQKGEMG 1447
Query: 306 RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
SGP GP GGPP LP PA P GA+ A P
Sbjct: 1448 IPGASGPIGP---GGPP--------------------GLPGPA----GPKGAKGATGPGG 1480
Query: 366 ERPCPGTRGVRSGREG----LLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
+ G +G G G ++ P P +T + + + P GGA + G
Sbjct: 1481 PKGEKGVQG-PPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1538
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 62.0 bits (149), Expect = 1e-09
Identities = 63/209 (30%), Positives = 78/209 (37%), Gaps = 33/209 (15%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
GL GAP V P P TPG T G GLP ++ R +P G +GS G
Sbjct: 187 GLKGQPGAPGVKGEPGAPG-ENGTPGQT--GARGLPGERGRVGAPGP--AGARGSDGSVG 241
Query: 309 LSGPFGPGPQGGPPS-----RDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
GP GP GPP + +G +G G A P R E+ PG + P
Sbjct: 242 PVGPAGPIGSAGPPGFPGAPGPKGEIGA-VGNA----GPAGPAGPRGEVGLPGLSGPVGP 296
Query: 364 DPERPCPGTRGVR--------SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-- 413
G G + +G GL P PR G R + PGP G
Sbjct: 297 PGNPGANGLTGAKGAAGLPGVAGAPGL--PGPRGIPGPVGAAGATGARGLVGEPGPAGSK 354
Query: 414 ------GAMSAAGTRSPPGPAESARSRGP 436
G +AG + PPGP+ RGP
Sbjct: 355 GESGNKGEPGSAGPQGPPGPSGEEGKRGP 383
Score = 57.4 bits (137), Expect = 3e-08
Identities = 64/203 (31%), Positives = 77/203 (37%), Gaps = 32/203 (15%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLG- 305
+GLP RGA + P PGL G G P + RG GP G+ G
Sbjct: 639 SGLPGERGAAGI----PGGKGEKGEPGLR--GEIGNPGRDGARGAPGAVGAPGPAGATGD 692
Query: 306 --RASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
A +GP GP GP+G P R ++G P G A P A + G R A
Sbjct: 693 RGEAGAAGPAGPAGPRGSPGERG------EVGPAG-PNGFAGPAGAAGQPGAKGERGAKG 745
Query: 363 PDPERPCPGTRGV-----RSGREGLLSPAPRSALGETAPTAQFTFRKVRN---PPGPRGG 414
P E G G +G G P P + G+ P F PPGP G
Sbjct: 746 PKGENGVVGPTGPVGAAGPAGPNG--PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSG- 802
Query: 415 AMSAAGTRSPPGPAESARSRGPR 437
+G PPGPA RGPR
Sbjct: 803 ---ISGPPGPPGPAGKEGLRGPR 822
Score = 53.1 bits (126), Expect = 5e-07
Identities = 61/188 (32%), Positives = 71/188 (37%), Gaps = 28/188 (14%)
Query: 263 PPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG-- 319
PP P PG+ GT GPS + L G +G+ G G G PG +G
Sbjct: 614 PPGPDGNKGEPGVVGAVGTA-------GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEI 666
Query: 320 GPPSRDRRHLGVQIGRVRVP--LGSALPYPARSELAPPGARDALSPDPERPCPGTRGV-- 375
G P RD G P +G+ P A + GA P R PG RG
Sbjct: 667 GNPGRD--------GARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG 718
Query: 376 RSGREGLLSPAPRS----ALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESA 431
+G G PA + A GE V P GP G A AG PPGPA S
Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAA-GPAGPNGPPGPAGSR 777
Query: 432 RSRGPRPG 439
GP PG
Sbjct: 778 GDGGP-PG 784
Score = 51.2 bits (121), Expect = 2e-06
Identities = 56/190 (29%), Positives = 68/190 (35%), Gaps = 42/190 (22%)
Query: 271 PTPGLTEGGGTGLPSKQRRGPSPKTELG-----------GPQGSLGRASLSGPFGPGPQG 319
P + G G P P PK E+G GP+G +G LSGP GP G
Sbjct: 245 PAGPIGSAGPPGFPG----APGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPV--GPPG 298
Query: 320 GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR 379
P + G V LP P R P GA A +G
Sbjct: 299 NPGANGLTGAKGAAGLPGVAGAPGLPGP-RGIPGPVGAAGA----------------TGA 341
Query: 380 EGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARS 433
GL+ P P + GE+ + + PPGP G G AG+ PPGP S
Sbjct: 342 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS 401
Query: 434 RGPR--PGWD 441
G R PG D
Sbjct: 402 PGSRGLPGAD 411
Score = 45.8 bits (107), Expect = 9e-05
Identities = 65/222 (29%), Positives = 76/222 (34%), Gaps = 65/222 (29%)
Query: 279 GGTGLPSK--QRRGPSPKTELG--GPQGSLGRASLSGPFG-PGP-----QGGPPSRDRRH 328
G G P +R PK E G GP G +G A +GP G PGP GGPP
Sbjct: 730 GAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPG--MTG 787
Query: 329 LGVQIGRVRVPLGSAL------PYPARSE--------------------LAPPGARDALS 362
GR P S + P PA E + PPG
Sbjct: 788 FPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKG 847
Query: 363 PDPERPC---PGTRGVRS--GREGLLS----------PAPRSALGETAPTAQFTFRKVRN 407
P E PGT G + G G+L P A+GE P +
Sbjct: 848 PSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLG------IAG 901
Query: 408 PPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
PPG RG GA+ + G PG A R PG D P D
Sbjct: 902 PPGARGPPGAVGSPGVNGAPGEA----GRDGNPGNDGPPGRD 939
Score = 45.4 bits (106), Expect = 1e-04
Identities = 61/197 (30%), Positives = 72/197 (36%), Gaps = 27/197 (13%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQR--RGPSPKTELGGPQGSLGR 306
GL RG P P P + P E G TG P+ R GP K G G GR
Sbjct: 94 GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTG-PAGARGPAGPPGKAGEDGHPGKPGR 152
Query: 307 ASLSGPFGP-GPQGGPPSRD-------RRHLGVQ--IGRVRVPLGSALPYPARSELAPPG 356
G GP G +G P + R H G+ G+ P P A E PG
Sbjct: 153 PGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP-GAPGENGTPG 211
Query: 357 ARDALSPDPER---PCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPR 412
A ER PG G R G +G + P P +G P PGP+
Sbjct: 212 QTGARGLPGERGRVGAPGPAGAR-GSDGSVGPVGPAGPIGSAGPPG------FPGAPGPK 264
Query: 413 G--GAMSAAGTRSPPGP 427
G GA+ AG P GP
Sbjct: 265 GEIGAVGNAGPAGPAGP 281
Score = 45.4 bits (106), Expect = 1e-04
Identities = 69/265 (26%), Positives = 81/265 (30%), Gaps = 90/265 (33%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR-- 306
G P +RG+P LP G G P RG S + GP G GR
Sbjct: 394 GPPGLRGSPGSRGLPGADG---------RAGVMGPPGS--RGASGPAGVRGPNGDAGRPG 442
Query: 307 -------------------ASLSGPFG-------------------------PGPQG--G 320
A GP G PGP+G G
Sbjct: 443 EPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTG 502
Query: 321 PPSR--DRRHLGVQIGR----------VRVPLGSALPYPARSELAPPGARDALS-PDPER 367
P + D+ H G+ R + P G + E PPG P P
Sbjct: 503 DPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSG 562
Query: 368 PC-----PGTRGVRSGREGLLSPA-------PRSALGETAPTAQFTFRKVRNPPGPRG-- 413
P PG RG+ G GL PA P G PT R PPGP G
Sbjct: 563 PAGEVGKPGERGLH-GEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNK 621
Query: 414 ---GAMSAAGTRSPPGPAESARSRG 435
G + A GT P GP+ RG
Sbjct: 622 GEPGVVGAVGTAGPSGPSGLPGERG 646
Score = 38.1 bits (87), Expect = 0.018
Identities = 89/325 (27%), Positives = 106/325 (32%), Gaps = 87/325 (26%)
Query: 162 PSSTQGLTKPLAD-GTAQWNGQETECQDDCFLGKSDLQNFEELREPAGT-GP--LLGHLL 217
P+ +GL P D G G+ F G+ P GT GP LLG
Sbjct: 812 PAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG--- 868
Query: 218 ELAKDALKLPDDH--------LHALSNPLPLTTTAGVVTGLPEVRGAPNVHRLP-----P 264
A L LP A+ P PL + G P RG P P P
Sbjct: 869 --APGILGLPGSRGERGLPGVAGAVGEPGPLG-----IAGPPGARGPPGAVGSPGVNGAP 921
Query: 265 PPSLRTPTPGLTEG--GGTGLPS-KQRRG-------------PSPKTELG--GPQGSLGR 306
+ R PG +G G G P K RG P P +G G G+ G
Sbjct: 922 GEAGRDGNPG-NDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGE 980
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
SGP GP GP R P G P R + PG +
Sbjct: 981 TGPSGPVGPAGAVGP---------------RGPSG---PQGIRGDKGEPGEKG------P 1016
Query: 367 RPCPGTRGVRSGREGLLSPA----PRSALGETAPTAQFTFRKVRNPPGPRG--------G 414
R PG +G +G +GL A + A G P R P GP G G
Sbjct: 1017 RGLPGLKG-HNGLQGLPGIAGHHGDQGAPGSVGPAGP---RGPAGPSGPAGKDGRTGHPG 1072
Query: 415 AMSAAGTRSPPGPAESARSRGPRPG 439
+ AG R P G A GP PG
Sbjct: 1073 TVGPAGIRGPQGHQGPAGPPGP-PG 1096
Score = 37.0 bits (84), Expect = 0.041
Identities = 42/149 (28%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 288 RRGPS----PKTELG--GPQGSLGRASLSGPFGPGPQGGPPSRD----RRHLGVQIGRVR 337
R+GP+ P+ E G GP G G +GP GP GPP ++ G +G
Sbjct: 31 RKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGP 90
Query: 338 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPT 397
P+G P PG + P E PG G R P G
Sbjct: 91 GPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKP 150
Query: 398 AQFTFRKVRNPPGPRGGAMSAAGTRSPPG 426
+ R V P G RG GT PG
Sbjct: 151 GRPGERGVVGPQGARG----FPGTPGLPG 175
Score = 32.3 bits (72), Expect = 1.00
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 299 GPQGSLGRASLSGPFGPGPQGGPPSRDRR--HLGVQIGRVRVPLGSALPYPARSELAPPG 356
G QG+ G +GP GP GP +D R H G +G P G P + PPG
Sbjct: 1039 GDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGT-VG----PAGIRGPQGHQGPAGPPG 1093
Query: 357 ARDALSPDPERPCPGTRG 374
P P P PG G
Sbjct: 1094 -----PPGPPGP-PGVSG 1105
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 61.2 bits (147), Expect = 2e-09
Identities = 64/206 (31%), Positives = 78/206 (37%), Gaps = 33/206 (16%)
Query: 254 RGAPNVHRLPPPPSLRTPT-PGLTEG--GGTGLPSKQRRG-----PSPKTELG--GPQGS 303
+GA V P P R PT P + G G TG P + P P E G GPQG
Sbjct: 879 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 938
Query: 304 LGRASLSGPFGPGPQGGPPSR--DRRHLGVQ----------IGRVRVPLGSALPYPARSE 351
+G GP GP + G P R G Q + + P G P R
Sbjct: 939 VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGH 998
Query: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPG P E+ PG G + G +G P P+ G+ P F R PG
Sbjct: 999 PGPPG------PPGEQGLPGAAG-KEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGA 1049
Query: 412 RG--GAMSAAGTRSPPGPAESARSRG 435
+G G G + PPGP S RG
Sbjct: 1050 QGAPGLKGGEGPQGPPGPVGSPGERG 1075
Score = 58.5 bits (140), Expect = 1e-08
Identities = 65/227 (28%), Positives = 80/227 (35%), Gaps = 51/227 (22%)
Query: 249 GLPEVRGAPNVH--RLPPPPSLRTPTPGLTEGGGT----GLPSKQ--RRGPSPKTELG-- 298
GLP +GAP + P P +PG GT GLP + + P P E G
Sbjct: 1045 GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAP 1104
Query: 299 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
GPQG GR + GP G PGP G P GS + E+
Sbjct: 1105 GEKGPQGPAGRDGVQGPVGLPGPAG-------------------PAGSPGEDGDKGEIGE 1145
Query: 355 PGARDALSPDPERPCPGTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNP 408
PG + + E PG G++ G G+ P PR G R P
Sbjct: 1146 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1205
Query: 409 PGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 444
PGP G G G PPGP +GP G D P+
Sbjct: 1206 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1251
Score = 49.3 bits (116), Expect = 8e-06
Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 299 GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP-YPARSELAPPGA 357
GP+G GRA +G GP Q G + G++ VP LP YP R P G+
Sbjct: 823 GPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP---GLPGYPGRQ--GPKGS 866
Query: 358 RDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
PG G + R P PR G T P R PGP+G
Sbjct: 867 TGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG---- 916
Query: 418 AAGTRSPPGPAESARSRGPR 437
+G PPGP +GP+
Sbjct: 917 TSGGDGPPGPPGERGPQGPQ 936
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 36/188 (19%)
Query: 265 PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--GP 321
PP G+ E G G GP + +GGP+G G +GP G GP G GP
Sbjct: 1253 PPGSVGSVGGVGEKGEPGEAGNP--GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG 381
P D P G+ P + PPG D G G G+ G
Sbjct: 1311 PGDDG------------PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDG-DPGQPG 1357
Query: 382 LLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARS 433
P P G P + R PPG G GA AG PPG
Sbjct: 1358 --PPGPSGEAGPPGPPGK------RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1409
Query: 434 RGP--RPG 439
+GP +PG
Sbjct: 1410 QGPAGKPG 1417
Score = 47.8 bits (112), Expect = 2e-05
Identities = 55/194 (28%), Positives = 72/194 (37%), Gaps = 23/194 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P + + PP P + G G P +Q P P+ L GPQG +G
Sbjct: 670 GTPGAPGQPGMAGVDGPPG---PKGNMGPQGEPGPPGQQGN-PGPQG-LPGPQGPIGPPG 724
Query: 309 LSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
GP G PG G GPP + Q G G+ P + + PG R
Sbjct: 725 EKGPQGKPGLAGLPGADGPPGHPGKE--GQSGE----KGALGPPGPQGPIGYPGPRGVKG 778
Query: 363 PDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGT 421
D R G++G G +G G+ Q R P GP+G AG
Sbjct: 779 ADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG----RAGP 833
Query: 422 RSPPGPAESARSRG 435
PGP+ A +G
Sbjct: 834 TGDPGPSGQAGEKG 847
Score = 47.0 bits (110), Expect = 4e-05
Identities = 53/183 (28%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPG-LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
G P G P + PP PG + G G P + GP+ + +GG +G G
Sbjct: 1297 GPPGAAGPPGA-KGPPGDDGPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDP 1353
Query: 308 SLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPER 367
GP GP + GPP P G + PPGA A E+
Sbjct: 1354 GQPGPPGPSGEAGPPG---------------PPG---------KRGPPGAAGAEGRQGEK 1389
Query: 368 PCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSP 424
G G G G P P+ G+ P +R PGP G G AAG P
Sbjct: 1390 GAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIPGPVGEQGLPGAAGQDGP 1442
Query: 425 PGP 427
PGP
Sbjct: 1443 PGP 1445
Score = 45.4 bits (106), Expect = 1e-04
Identities = 62/227 (27%), Positives = 75/227 (33%), Gaps = 46/227 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS------------KQRR------- 289
G P G P LP PP P G G+ P+ +Q R
Sbjct: 484 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 543
Query: 290 GPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSA 343
GP T GP G G + G G PGPQG GPP + + GR G
Sbjct: 544 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP--GKRGRPGADGGRG 601
Query: 344 LPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFR 403
+P PGA+ D PG +G R R P P G + R
Sbjct: 602 MP-------GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 654
Query: 404 KVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPG 439
+ GPRG G AG PPGP + +G PG
Sbjct: 655 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 700
Score = 41.6 bits (96), Expect = 0.002
Identities = 62/210 (29%), Positives = 77/210 (36%), Gaps = 36/210 (17%)
Query: 257 PNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPS---PKTELGGPQGSLGRASLSGPF 313
PN P P+ T G G Q+ P+ P + GP G G A + GP
Sbjct: 409 PNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP- 467
Query: 314 GPGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP------GARDALSPDP 365
PG QG GPP D G GR +P LP P + L P G++
Sbjct: 468 -PGLQGPTGPPG-DPGDRGPP-GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524
Query: 366 E--------------RPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPG 410
E R PG G+ +GR G + P A GE+ R V+ PPG
Sbjct: 525 EAQAQAILQQARIALRGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 583
Query: 411 PRG-----GAMSAAGTRSPPGPAESARSRG 435
P G G A G R PG + RG
Sbjct: 584 PTGKPGKRGRPGADGGRGMPGEPGAKGDRG 613
Score = 40.0 bits (92), Expect = 0.005
Identities = 61/229 (26%), Positives = 73/229 (31%), Gaps = 54/229 (23%)
Query: 263 PPPPSLRTPT--PGLTEGGGTGLPSKQR-----------RG-PSPKTELG-----GPQGS 303
P PP L+ P PG+ G G P Q+ RG P P +G GP G
Sbjct: 1161 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1220
Query: 304 LGRASLSGPFGP----------GP-----QGGPPSRDRRHLGV-------QIGRVRVP-- 339
G GP GP GP GPP GV + G P
Sbjct: 1221 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1280
Query: 340 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 399
G P R E G A P + PG G + + P GE P Q
Sbjct: 1281 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1340
Query: 400 FTFRKVR---------NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
+ PPGP G G G R PPG A + +G +
Sbjct: 1341 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1389
Score = 38.5 bits (88), Expect = 0.014
Identities = 54/208 (25%), Positives = 68/208 (32%), Gaps = 54/208 (25%)
Query: 263 PPPPSLRTPTPGLT-------------EGGGTGLPSKQ----------RRGPSPKTELGG 299
P PP R P PG E G G P K + GP + G
Sbjct: 1368 PGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPG 1426
Query: 300 PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARD 359
P G G +G GP GPP + ++ GS + E PG
Sbjct: 1427 PVGEQGLPGAAGQDGPPGPMGPPG---------LPGLKGDPGS------KGEKGHPGLIG 1471
Query: 360 ALSPDPE------RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
+ P E R PGT+G + P P LG P + P GP+G
Sbjct: 1472 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKG 1525
Query: 414 --GAMSAAGTRSPPGPAESARSRGPRPG 439
G+ AG + G S GP PG
Sbjct: 1526 NKGSTGPAGQKGDSGLPGPPGSPGP-PG 1552
Score = 32.7 bits (73), Expect = 0.76
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPG 439
V PPGP G G M G + P GP RGP RPG
Sbjct: 452 VEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 490
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 61.2 bits (147), Expect = 2e-09
Identities = 64/206 (31%), Positives = 78/206 (37%), Gaps = 33/206 (16%)
Query: 254 RGAPNVHRLPPPPSLRTPT-PGLTEG--GGTGLPSKQRRG-----PSPKTELG--GPQGS 303
+GA V P P R PT P + G G TG P + P P E G GPQG
Sbjct: 828 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 887
Query: 304 LGRASLSGPFGPGPQGGPPSR--DRRHLGVQ----------IGRVRVPLGSALPYPARSE 351
+G GP GP + G P R G Q + + P G P R
Sbjct: 888 VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGH 947
Query: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPG P E+ PG G + G +G P P+ G+ P F R PG
Sbjct: 948 PGPPG------PPGEQGLPGAAG-KEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGA 998
Query: 412 RG--GAMSAAGTRSPPGPAESARSRG 435
+G G G + PPGP S RG
Sbjct: 999 QGAPGLKGGEGPQGPPGPVGSPGERG 1024
Score = 58.5 bits (140), Expect = 1e-08
Identities = 65/227 (28%), Positives = 80/227 (35%), Gaps = 51/227 (22%)
Query: 249 GLPEVRGAPNVH--RLPPPPSLRTPTPGLTEGGGT----GLPSKQ--RRGPSPKTELG-- 298
GLP +GAP + P P +PG GT GLP + + P P E G
Sbjct: 994 GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAP 1053
Query: 299 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
GPQG GR + GP G PGP G P GS + E+
Sbjct: 1054 GEKGPQGPAGRDGVQGPVGLPGPAG-------------------PAGSPGEDGDKGEIGE 1094
Query: 355 PGARDALSPDPERPCPGTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNP 408
PG + + E PG G++ G G+ P PR G R P
Sbjct: 1095 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1154
Query: 409 PGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 444
PGP G G G PPGP +GP G D P+
Sbjct: 1155 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1200
Score = 49.3 bits (116), Expect = 8e-06
Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 299 GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP-YPARSELAPPGA 357
GP+G GRA +G GP Q G + G++ VP LP YP R P G+
Sbjct: 772 GPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP---GLPGYPGRQ--GPKGS 815
Query: 358 RDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
PG G + R P PR G T P R PGP+G
Sbjct: 816 TGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG---- 865
Query: 418 AAGTRSPPGPAESARSRGPR 437
+G PPGP +GP+
Sbjct: 866 TSGGDGPPGPPGERGPQGPQ 885
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 36/188 (19%)
Query: 265 PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--GP 321
PP G+ E G G GP + +GGP+G G +GP G GP G GP
Sbjct: 1202 PPGSVGSVGGVGEKGEPGEAGNP--GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG 381
P D P G+ P + PPG D G G G+ G
Sbjct: 1260 PGDDG------------PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDG-DPGQPG 1306
Query: 382 LLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARS 433
P P G P + R PPG G GA AG PPG
Sbjct: 1307 --PPGPSGEAGPPGPPGK------RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1358
Query: 434 RGP--RPG 439
+GP +PG
Sbjct: 1359 QGPAGKPG 1366
Score = 47.8 bits (112), Expect = 2e-05
Identities = 55/194 (28%), Positives = 72/194 (37%), Gaps = 23/194 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P + + PP P + G G P +Q P P+ L GPQG +G
Sbjct: 619 GTPGAPGQPGMAGVDGPPG---PKGNMGPQGEPGPPGQQGN-PGPQG-LPGPQGPIGPPG 673
Query: 309 LSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
GP G PG G GPP + Q G G+ P + + PG R
Sbjct: 674 EKGPQGKPGLAGLPGADGPPGHPGKE--GQSGE----KGALGPPGPQGPIGYPGPRGVKG 727
Query: 363 PDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGT 421
D R G++G G +G G+ Q R P GP+G AG
Sbjct: 728 ADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG----RAGP 782
Query: 422 RSPPGPAESARSRG 435
PGP+ A +G
Sbjct: 783 TGDPGPSGQAGEKG 796
Score = 47.0 bits (110), Expect = 4e-05
Identities = 53/183 (28%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPG-LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
G P G P + PP PG + G G P + GP+ + +GG +G G
Sbjct: 1246 GPPGAAGPPGA-KGPPGDDGPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDP 1302
Query: 308 SLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPER 367
GP GP + GPP P G + PPGA A E+
Sbjct: 1303 GQPGPPGPSGEAGPPG---------------PPG---------KRGPPGAAGAEGRQGEK 1338
Query: 368 PCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSP 424
G G G G P P+ G+ P +R PGP G G AAG P
Sbjct: 1339 GAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIPGPVGEQGLPGAAGQDGP 1391
Query: 425 PGP 427
PGP
Sbjct: 1392 PGP 1394
Score = 45.4 bits (106), Expect = 1e-04
Identities = 62/227 (27%), Positives = 75/227 (33%), Gaps = 46/227 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS------------KQRR------- 289
G P G P LP PP P G G+ P+ +Q R
Sbjct: 433 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 492
Query: 290 GPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSA 343
GP T GP G G + G G PGPQG GPP + + GR G
Sbjct: 493 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP--GKRGRPGADGGRG 550
Query: 344 LPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFR 403
+P PGA+ D PG +G R R P P G + R
Sbjct: 551 MP-------GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 603
Query: 404 KVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPG 439
+ GPRG G AG PPGP + +G PG
Sbjct: 604 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 649
Score = 41.6 bits (96), Expect = 0.002
Identities = 62/210 (29%), Positives = 77/210 (36%), Gaps = 36/210 (17%)
Query: 257 PNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPS---PKTELGGPQGSLGRASLSGPF 313
PN P P+ T G G Q+ P+ P + GP G G A + GP
Sbjct: 358 PNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP- 416
Query: 314 GPGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP------GARDALSPDP 365
PG QG GPP D G GR +P LP P + L P G++
Sbjct: 417 -PGLQGPTGPPG-DPGDRGPP-GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473
Query: 366 E--------------RPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPG 410
E R PG G+ +GR G + P A GE+ R V+ PPG
Sbjct: 474 EAQAQAILQQARIALRGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 532
Query: 411 PRG-----GAMSAAGTRSPPGPAESARSRG 435
P G G A G R PG + RG
Sbjct: 533 PTGKPGKRGRPGADGGRGMPGEPGAKGDRG 562
Score = 40.0 bits (92), Expect = 0.005
Identities = 61/229 (26%), Positives = 73/229 (31%), Gaps = 54/229 (23%)
Query: 263 PPPPSLRTPT--PGLTEGGGTGLPSKQR-----------RG-PSPKTELG-----GPQGS 303
P PP L+ P PG+ G G P Q+ RG P P +G GP G
Sbjct: 1110 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1169
Query: 304 LGRASLSGPFGP----------GP-----QGGPPSRDRRHLGV-------QIGRVRVP-- 339
G GP GP GP GPP GV + G P
Sbjct: 1170 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1229
Query: 340 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 399
G P R E G A P + PG G + + P GE P Q
Sbjct: 1230 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1289
Query: 400 FTFRKVR---------NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
+ PPGP G G G R PPG A + +G +
Sbjct: 1290 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1338
Score = 38.5 bits (88), Expect = 0.014
Identities = 54/208 (25%), Positives = 68/208 (32%), Gaps = 54/208 (25%)
Query: 263 PPPPSLRTPTPGLT-------------EGGGTGLPSKQ----------RRGPSPKTELGG 299
P PP R P PG E G G P K + GP + G
Sbjct: 1317 PGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPG 1375
Query: 300 PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARD 359
P G G +G GP GPP + ++ GS + E PG
Sbjct: 1376 PVGEQGLPGAAGQDGPPGPMGPPG---------LPGLKGDPGS------KGEKGHPGLIG 1420
Query: 360 ALSPDPE------RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
+ P E R PGT+G + P P LG P + P GP+G
Sbjct: 1421 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKG 1474
Query: 414 --GAMSAAGTRSPPGPAESARSRGPRPG 439
G+ AG + G S GP PG
Sbjct: 1475 NKGSTGPAGQKGDSGLPGPPGSPGP-PG 1501
Score = 32.7 bits (73), Expect = 0.76
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPG 439
V PPGP G G M G + P GP RGP RPG
Sbjct: 401 VEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 439
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 61.2 bits (147), Expect = 2e-09
Identities = 64/206 (31%), Positives = 78/206 (37%), Gaps = 33/206 (16%)
Query: 254 RGAPNVHRLPPPPSLRTPT-PGLTEG--GGTGLPSKQRRG-----PSPKTELG--GPQGS 303
+GA V P P R PT P + G G TG P + P P E G GPQG
Sbjct: 867 KGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 926
Query: 304 LGRASLSGPFGPGPQGGPPSR--DRRHLGVQ----------IGRVRVPLGSALPYPARSE 351
+G GP GP + G P R G Q + + P G P R
Sbjct: 927 VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGH 986
Query: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPG P E+ PG G + G +G P P+ G+ P F R PG
Sbjct: 987 PGPPG------PPGEQGLPGAAG-KEGAKG--DPGPQGISGKDGPAGLRGFPGERGLPGA 1037
Query: 412 RG--GAMSAAGTRSPPGPAESARSRG 435
+G G G + PPGP S RG
Sbjct: 1038 QGAPGLKGGEGPQGPPGPVGSPGERG 1063
Score = 58.5 bits (140), Expect = 1e-08
Identities = 65/227 (28%), Positives = 80/227 (35%), Gaps = 51/227 (22%)
Query: 249 GLPEVRGAPNVH--RLPPPPSLRTPTPGLTEGGGT----GLPSKQ--RRGPSPKTELG-- 298
GLP +GAP + P P +PG GT GLP + + P P E G
Sbjct: 1033 GLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAP 1092
Query: 299 ---GPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
GPQG GR + GP G PGP G P GS + E+
Sbjct: 1093 GEKGPQGPAGRDGVQGPVGLPGPAG-------------------PAGSPGEDGDKGEIGE 1133
Query: 355 PGARDALSPDPERPCPGTRGVRS--GREGLL----SPAPRSALGETAPTAQFTFRKVRNP 408
PG + + E PG G++ G G+ P PR G R P
Sbjct: 1134 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1193
Query: 409 PGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 444
PGP G G G PPGP +GP G D P+
Sbjct: 1194 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN-GADGPQ 1239
Score = 49.3 bits (116), Expect = 8e-06
Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 299 GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP-YPARSELAPPGA 357
GP+G GRA +G GP Q G + G++ VP LP YP R P G+
Sbjct: 811 GPEGPKGRAGPTGDPGPSGQAG-----------EKGKLGVP---GLPGYPGRQ--GPKGS 854
Query: 358 RDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
PG G + R P PR G T P R PGP+G
Sbjct: 855 TGFPG------FPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKG---- 904
Query: 418 AAGTRSPPGPAESARSRGPR 437
+G PPGP +GP+
Sbjct: 905 TSGGDGPPGPPGERGPQGPQ 924
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 36/188 (19%)
Query: 265 PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--GP 321
PP G+ E G G GP + +GGP+G G +GP G GP G GP
Sbjct: 1241 PPGSVGSVGGVGEKGEPGEAGNP--GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG 381
P D P G+ P + PPG D G G G+ G
Sbjct: 1299 PGDDG------------PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDG-DPGQPG 1345
Query: 382 LLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARS 433
P P G P + R PPG G GA AG PPG
Sbjct: 1346 --PPGPSGEAGPPGPPGK------RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1397
Query: 434 RGP--RPG 439
+GP +PG
Sbjct: 1398 QGPAGKPG 1405
Score = 47.8 bits (112), Expect = 2e-05
Identities = 55/194 (28%), Positives = 72/194 (37%), Gaps = 23/194 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P + + PP P + G G P +Q P P+ L GPQG +G
Sbjct: 658 GTPGAPGQPGMAGVDGPPG---PKGNMGPQGEPGPPGQQGN-PGPQG-LPGPQGPIGPPG 712
Query: 309 LSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
GP G PG G GPP + Q G G+ P + + PG R
Sbjct: 713 EKGPQGKPGLAGLPGADGPPGHPGKE--GQSGE----KGALGPPGPQGPIGYPGPRGVKG 766
Query: 363 PDPERPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGT 421
D R G++G G +G G+ Q R P GP+G AG
Sbjct: 767 ADGVRGLKGSKG-EKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG----RAGP 821
Query: 422 RSPPGPAESARSRG 435
PGP+ A +G
Sbjct: 822 TGDPGPSGQAGEKG 835
Score = 47.0 bits (110), Expect = 4e-05
Identities = 53/183 (28%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPG-LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
G P G P + PP PG + G G P + GP+ + +GG +G G
Sbjct: 1285 GPPGAAGPPGA-KGPPGDDGPKGNPGPVGFPGDPGPPGEP--GPAGQDGVGGDKGEDGDP 1341
Query: 308 SLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPER 367
GP GP + GPP P G + PPGA A E+
Sbjct: 1342 GQPGPPGPSGEAGPPG---------------PPG---------KRGPPGAAGAEGRQGEK 1377
Query: 368 PCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSP 424
G G G G P P+ G+ P +R PGP G G AAG P
Sbjct: 1378 GAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEG------LRGIPGPVGEQGLPGAAGQDGP 1430
Query: 425 PGP 427
PGP
Sbjct: 1431 PGP 1433
Score = 45.4 bits (106), Expect = 1e-04
Identities = 62/227 (27%), Positives = 75/227 (33%), Gaps = 46/227 (20%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS------------KQRR------- 289
G P G P LP PP P G G+ P+ +Q R
Sbjct: 472 GPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPP 531
Query: 290 GPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSA 343
GP T GP G G + G G PGPQG GPP + + GR G
Sbjct: 532 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP--GKRGRPGADGGRG 589
Query: 344 LPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFR 403
+P PGA+ D PG +G R R P P G + R
Sbjct: 590 MP-------GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR 642
Query: 404 KVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPRPG 439
+ GPRG G AG PPGP + +G PG
Sbjct: 643 GLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPG 688
Score = 41.6 bits (96), Expect = 0.002
Identities = 62/210 (29%), Positives = 77/210 (36%), Gaps = 36/210 (17%)
Query: 257 PNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPS---PKTELGGPQGSLGRASLSGPF 313
PN P P+ T G G Q+ P+ P + GP G G A + GP
Sbjct: 397 PNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP- 455
Query: 314 GPGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP------GARDALSPDP 365
PG QG GPP D G GR +P LP P + L P G++
Sbjct: 456 -PGLQGPTGPPG-DPGDRGPP-GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512
Query: 366 E--------------RPCPGTRGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPG 410
E R PG G+ +GR G + P A GE+ R V+ PPG
Sbjct: 513 EAQAQAILQQARIALRGPPGPMGL-TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 571
Query: 411 PRG-----GAMSAAGTRSPPGPAESARSRG 435
P G G A G R PG + RG
Sbjct: 572 PTGKPGKRGRPGADGGRGMPGEPGAKGDRG 601
Score = 40.0 bits (92), Expect = 0.005
Identities = 61/229 (26%), Positives = 73/229 (31%), Gaps = 54/229 (23%)
Query: 263 PPPPSLRTPT--PGLTEGGGTGLPSKQR-----------RG-PSPKTELG-----GPQGS 303
P PP L+ P PG+ G G P Q+ RG P P +G GP G
Sbjct: 1149 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1208
Query: 304 LGRASLSGPFGP----------GP-----QGGPPSRDRRHLGV-------QIGRVRVP-- 339
G GP GP GP GPP GV + G P
Sbjct: 1209 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1268
Query: 340 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 399
G P R E G A P + PG G + + P GE P Q
Sbjct: 1269 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1328
Query: 400 FTFRKVR---------NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
+ PPGP G G G R PPG A + +G +
Sbjct: 1329 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1377
Score = 38.5 bits (88), Expect = 0.014
Identities = 54/208 (25%), Positives = 68/208 (32%), Gaps = 54/208 (25%)
Query: 263 PPPPSLRTPTPGLT-------------EGGGTGLPSKQ----------RRGPSPKTELGG 299
P PP R P PG E G G P K + GP + G
Sbjct: 1356 PGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPG 1414
Query: 300 PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARD 359
P G G +G GP GPP + ++ GS + E PG
Sbjct: 1415 PVGEQGLPGAAGQDGPPGPMGPPG---------LPGLKGDPGS------KGEKGHPGLIG 1459
Query: 360 ALSPDPE------RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
+ P E R PGT+G + P P LG P + P GP+G
Sbjct: 1460 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPG------LPGPQGPKG 1513
Query: 414 --GAMSAAGTRSPPGPAESARSRGPRPG 439
G+ AG + G S GP PG
Sbjct: 1514 NKGSTGPAGQKGDSGLPGPPGSPGP-PG 1540
Score = 32.7 bits (73), Expect = 0.76
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 405 VRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPG 439
V PPGP G G M G + P GP RGP RPG
Sbjct: 440 VEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG 478
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 60.5 bits (145), Expect = 3e-09
Identities = 68/206 (33%), Positives = 76/206 (36%), Gaps = 34/206 (16%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGG-------------- 299
RG P P P R PT E G G+ K P PK GG
Sbjct: 900 RGTPGK---PGPRGQRGPTGPRGERGPRGITGK----PGPKGNSGGDGPAGPPGERGPNG 952
Query: 300 PQGSLGRASLSGPFGPGPQGGPPSR--DRRHLGVQIGRVRV--PLGSALPYPARSELAPP 355
PQG G GP GP + G P R G Q G+ P G P E P
Sbjct: 953 PQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ-GKTGPPGPPGVVGPQGPTGETGPM 1011
Query: 356 GARDALSPDPERPCPGTRGV--RSGREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPR 412
G R P P P PG +G+ +G+EG P P G+ P F R PGP
Sbjct: 1012 GERG--HPGPPGP-PGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPV 1068
Query: 413 G--GAMSAAGTRSPPGPAESARSRGP 436
G G G PPGPA S RGP
Sbjct: 1069 GALGLKGNEGPPGPPGPAGSPGERGP 1094
Score = 57.0 bits (136), Expect = 4e-08
Identities = 70/225 (31%), Positives = 86/225 (38%), Gaps = 47/225 (20%)
Query: 249 GLPEVRGAPNV--HRLPPPPSLRTPTPG----LTEGGGTGLPSKQ--RRGPSPKTELG-- 298
GLP GA + + PP P +PG G G+P + + P P E G
Sbjct: 1063 GLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAP 1122
Query: 299 ---GPQGSLGRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 352
GPQG GR L GP G PGP G GPP D G + P G + E
Sbjct: 1123 GEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDG-----DKGEIGEP-GQKGSKGDKGEQ 1176
Query: 353 APPGARDALSPDPERPCPGTRGVRS-----GREGLL----SPAPRSALGETAPTAQFTFR 403
PPG P + PG G G++GL PR G P +
Sbjct: 1177 GPPGPTGPQGPIGQ---PGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG---LQ 1230
Query: 404 KVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPGWDTPE 444
+ PPG +G G + G PPGP RGP PG D P+
Sbjct: 1231 GLPGPPGEKGETGDVGQMGPPGPPGP------RGPSGAPGADGPQ 1269
Score = 53.1 bits (126), Expect = 5e-07
Identities = 61/222 (27%), Positives = 77/222 (34%), Gaps = 39/222 (17%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P + G P P P P PG E GG G P Q GP G +G+ G
Sbjct: 748 GKPGLPGMPGADGPPGHPGKEGP-PG--EKGGQGPPGPQ--GPIGYPGPRGVKGADGIRG 802
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGRVRV-------------PLGSALPYPARSELAPP 355
L G G + G P + +G++ R + P G P L PP
Sbjct: 803 LKGTKGEKGEDGFPGF-KGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPP 861
Query: 356 GARDALS-------PDPERP--------CPGTRGVRSGREGLLSPAPRSALGETAPTAQF 400
G + L P + P PG G + GR P PR G T P +
Sbjct: 862 GEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGER 921
Query: 401 TFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR 437
R + PGP+G G G R P GP GP+
Sbjct: 922 GPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPK 963
Score = 48.9 bits (115), Expect = 1e-05
Identities = 57/191 (29%), Positives = 70/191 (36%), Gaps = 38/191 (19%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 313
+GA L PP P G G P K GP + GP G G GP
Sbjct: 1407 KGAKGEAGLEGPPGKTGPI------GPQGAPGKP--GPDGLRGIPGPVGEQGLPGSPGPD 1458
Query: 314 GPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTR 373
GP GPP G++ G + P + E PG + P E+ G R
Sbjct: 1459 GPPGPMGPPGLP----GLK--------GDSGP---KGEKGHPGLIGLIGPPGEQGEKGDR 1503
Query: 374 GVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPA 428
G+ G +G S P+ G T P+ PPGP G G A G+ P GP
Sbjct: 1504 GL-PGPQG--SSGPKGEQGITGPSGPI------GPPGPPGLPGPPGPKGAKGSSGPTGPK 1554
Query: 429 ESARSRGPRPG 439
A GP PG
Sbjct: 1555 GEAGHPGP-PG 1564
Score = 47.4 bits (111), Expect = 3e-05
Identities = 60/217 (27%), Positives = 73/217 (33%), Gaps = 50/217 (23%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTE------------ 296
G P G P LP PP P GGG +GP +
Sbjct: 499 GPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDA----GSKGPMVSAQESQAQAILQQAR 554
Query: 297 --LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGR-VRVPLGSALPYPARSELA 353
L GP G +G GP GP P G + +G Q R V+ P G A
Sbjct: 555 LALRGPAGPMGLTGRPGPVGP-PGSGGLKGEPGDVGPQGPRGVQGPPGPA---------G 604
Query: 354 PPGARDALSPDPERPCPGTRGVRSGR--EGLLS-PAPRSALGETAPTAQFTFRKVRNPPG 410
PG R D R PG G + R +GL P + G+ P+ PPG
Sbjct: 605 KPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPS---------GPPG 655
Query: 411 PRG--------GAMSAAGTRSPPGPAESARSRGPRPG 439
P G G + G PGP +GP PG
Sbjct: 656 PPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGP-PG 691
Score = 45.8 bits (107), Expect = 9e-05
Identities = 57/198 (28%), Positives = 71/198 (35%), Gaps = 31/198 (15%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P V + P P + G G P +Q G L GPQG++G
Sbjct: 688 GPPGPPGPPGVTGMDGQPG---PKGNVGPQGEPGPPGQQ--GNPGAQGLPGPQGAIGPPG 742
Query: 309 LSGPFG----PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
GP G PG G GPP H G + G G P P + + PG R
Sbjct: 743 EKGPLGKPGLPGMPGADGPPG----HPGKE-GPPGEKGGQGPPGP-QGPIGYPGPRGVKG 796
Query: 363 PDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMS 417
D R GT+G G +G P + +G + PPGPRG G
Sbjct: 797 ADGIRGLKGTKG-EKGEDGF--PGFKGDMGIKGDRGEI------GPPGPRGEDGPEGPKG 847
Query: 418 AAGTRSPPGPAESARSRG 435
G PGP +G
Sbjct: 848 RGGPNGDPGPLGPPGEKG 865
Score = 45.8 bits (107), Expect = 9e-05
Identities = 59/202 (29%), Positives = 69/202 (34%), Gaps = 38/202 (18%)
Query: 263 PPPPSLRTPT--PGLT----EGGGTGLPS----KQRRGPSPKTEL---GGPQGSLGRASL 309
P PP R P+ PG GG G P K G + + L GGP G G
Sbjct: 1251 PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGE 1310
Query: 310 SGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPC 369
G GP GPP + G P GS P + PPG D
Sbjct: 1311 KGESGPSGAAGPPG-PKGPPGDD-----GPKGSPGPVGFPGDPGPPGEPGPAGQDGP--- 1361
Query: 370 PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGT 421
PG +G SP P G + P + R PPGP G GA AG
Sbjct: 1362 PGDKGDDGEPGQTGSPGPTGEPGPSGPPGK------RGPPGPAGPEGRQGEKGAKGEAGL 1415
Query: 422 RSPPGPAESARSRGP--RPGWD 441
PPG +G +PG D
Sbjct: 1416 EGPPGKTGPIGPQGAPGKPGPD 1437
Score = 40.4 bits (93), Expect = 0.004
Identities = 55/191 (28%), Positives = 68/191 (35%), Gaps = 22/191 (11%)
Query: 266 PSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG----GPQGSLGRASLSGP---FGPGPQ 318
P + + EG G K ++G E G GP G G A L GP GP Q
Sbjct: 432 PGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQ 491
Query: 319 GGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP----GARDALSPDPERPCPGTRG 374
G P GR +P LP P + L P G DA S P ++
Sbjct: 492 VGDPGERG-----PPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQA 546
Query: 375 ---VRSGREGLLSPA-PRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAES 430
++ R L PA P G P ++ PG G G + PPGPA
Sbjct: 547 QAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGD-VGPQGPRGVQGPPGPAGK 605
Query: 431 ARSRGPRPGWD 441
RG R G D
Sbjct: 606 PGRRG-RAGSD 615
Score = 40.0 bits (92), Expect = 0.005
Identities = 52/199 (26%), Positives = 64/199 (32%), Gaps = 49/199 (24%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
+ GLP +G HR P PS PG RG + G G G
Sbjct: 635 LAGLPGEKG----HRGDPGPSGPPGPPG----------DDGERGDDGEVGPRGLPGEPGP 680
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
L GP GP GPP PG + + P E
Sbjct: 681 RGLLGPKGPPGPPGPPG------------------------VTGMDGQPGPKGNVGPQGE 716
Query: 367 RPCPGTRGVRSGREGLLSPAPRSAL---GETAPTAQFTFRKVRNPPGPRG-----GAMSA 418
PG +G G +GL P P+ A+ GE P + + GP G G
Sbjct: 717 PGPPGQQG-NPGAQGL--PGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGE 773
Query: 419 AGTRSPPGPAESARSRGPR 437
G + PPGP GPR
Sbjct: 774 KGGQGPPGPQGPIGYPGPR 792
Score = 33.9 bits (76), Expect = 0.34
Identities = 35/98 (35%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P +G LP P P E G TG PS P P L GP G G
Sbjct: 1492 GPPGEQGEKGDRGLPGPQGSSGPKG---EQGITG-PSGPIGPPGPPG-LPGPPGPKGAKG 1546
Query: 309 LSGPFGP-------GPQG--GPPSRDRRHLGVQIGRVR 337
SGP GP GP G GPP + L +Q R R
Sbjct: 1547 SSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTR 1584
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 59.3 bits (142), Expect = 8e-09
Identities = 72/233 (30%), Positives = 95/233 (40%), Gaps = 34/233 (14%)
Query: 231 LHALSNPLPLTTTAGVVTGLPEV----RGAPNVHRL--PPPPSLRTPT--PGLTEGGGTG 282
L +S P + + + LP + RG L PPPP L P G G G
Sbjct: 18 LSIVSQPTFINSVLPISAALPSLDQKKRGGHKACCLLTPPPPPLFPPPFFRGGRSPGPPG 77
Query: 283 LPSKQRRGPS-PKTELGGP-----QGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQ-IG 334
LP K GP K ELG P G G + GP G PGP+G P ++ LG+ +
Sbjct: 78 LPGKT--GPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEG--PRGEKGDLGMMGLP 133
Query: 335 RVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL-GE 393
R P+GS +R E G + L P E+ PG G+ G++G + P + G
Sbjct: 134 GSRGPMGSKGYPGSRGEKGSRGEKGDLGPKGEKGFPGFPGM-LGQKGEMGPKGEPGIAGH 192
Query: 394 TAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPG-PAESARSRGPRPGWDTP 443
PT + PG RG G +G PPG P S + P P P
Sbjct: 193 RGPTGR---------PGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPPP 236
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 58.9 bits (141), Expect = 1e-08
Identities = 65/198 (32%), Positives = 76/198 (38%), Gaps = 20/198 (10%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSK--QRRGPSPKTELG-----GP 300
TG G V P P E G TGLP +R GP + G GP
Sbjct: 445 TGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGP 504
Query: 301 QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPG-ARD 359
+G G GP GP+G P R G + P P + PPG A
Sbjct: 505 KGPAGERGSPGP--AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP-DGKTGPPGPAGQ 561
Query: 360 ALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMS 417
P P P PG RG ++G G P P+ A GE + R V PPG G G
Sbjct: 562 DGRPGPPGP-PGARG-QAGVMGF--PGPKGAAGEPGKAGE---RGVPGPPGAVGPAGKDG 614
Query: 418 AAGTRSPPGPAESARSRG 435
AG + PPGPA A RG
Sbjct: 615 EAGAQGPPGPAGPAGERG 632
Score = 54.7 bits (130), Expect = 2e-07
Identities = 72/232 (31%), Positives = 87/232 (37%), Gaps = 36/232 (15%)
Query: 247 VTGLPEVRGAPNV------HRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 300
V G P +GA +P PP P E G G P GP+ + GP
Sbjct: 579 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA--GPAGERGEQGP 636
Query: 301 QGSLGRASLSGPFG-------PGPQGGP-------PSRDRRHLGVQIGR-VRVPLGSALP 345
GS G L GP G PG QG P PS R G R V+ P G A P
Sbjct: 637 AGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGP 696
Query: 346 YPARSELAPPGAR-DALSPDP--ERPCPGTRGVRSGREGLLSPAPRSALGETAP------ 396
A GA+ DA +P + PG +G+ R P P+ G+ P
Sbjct: 697 RGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS 756
Query: 397 TAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKG 446
+ R + P GP G GA G P GPA +RG PG D E G
Sbjct: 757 PGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARG-APG-DRGEPG 806
Score = 53.9 bits (128), Expect = 3e-07
Identities = 60/208 (28%), Positives = 71/208 (34%), Gaps = 35/208 (16%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRG----PSPKTELG--GPQGSLGR 306
+G+P P P + G GLP ++ RG P P E G GP G+ G
Sbjct: 934 KGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE 993
Query: 307 ASLSGPFGPGPQGGPPSRDRRH----LGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
GP GP GPP R GR P G+ PPGA A
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP-GAKGDRGETGPAGPPGAPGA-- 1050
Query: 363 PDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------- 413
P P P +SG G PA G P R P GPRG
Sbjct: 1051 --PGAPGPVGPAGKSGDRGETGPA-----GPAGPVGPVGARGPAGPQGPRGDKGETGEQG 1103
Query: 414 -----GAMSAAGTRSPPGPAESARSRGP 436
G +G + PPGP S +GP
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131
Score = 53.5 bits (127), Expect = 4e-07
Identities = 68/247 (27%), Positives = 82/247 (33%), Gaps = 66/247 (26%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSL-------------RTPTPGLTEGGGTGLPSKQRRGPSP 293
+ G P + G P P PP L T G++ G G PS R P P
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMG-PSGPRGLPGP 192
Query: 294 KTELG-----GPQGSLGRASLSGPFGPGPQGGPPSR--------------DRRHLGVQIG 334
G GP G G SGP GP GPP + +R G Q G
Sbjct: 193 PGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ-G 251
Query: 335 RVRVPLGSALP-----------YPARSELAPPGARDALSPDPERPCPGTRGVRS-----G 378
+P + LP A+ + P G + E PG G R G
Sbjct: 252 ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG 311
Query: 379 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAES 430
R G +P P A G T PPGP G GA+ A G P GP S
Sbjct: 312 RPG--APGPAGARGNDGATG------AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGS 363
Query: 431 ARSRGPR 437
+G R
Sbjct: 364 EGPQGVR 370
Score = 53.5 bits (127), Expect = 4e-07
Identities = 50/179 (27%), Positives = 64/179 (35%), Gaps = 28/179 (15%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRV 338
G GLP ++ R +P G +G+ G +GP GP GPP +
Sbjct: 302 GPRGLPGERGRPGAPGP--AGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Query: 339 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLL-SPAPRSALGETA 395
P GS P R E PPG A P G G + +G G+ +P A G +
Sbjct: 360 PRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
Query: 396 PTAQFTFRKVRNPPGPRG-----------------GAMSAAGTRSPPGPAESARSRGPR 437
P PPGP+G G G + PPGPA RG R
Sbjct: 420 PQGP------GGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGAR 472
Score = 52.4 bits (124), Expect = 9e-07
Identities = 58/207 (28%), Positives = 67/207 (32%), Gaps = 23/207 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLR--------TPTPGLT-EGGGTGLP----SKQRRGPSPKT 295
GLP RG P P P R PG T G G P +K GP
Sbjct: 305 GLPGERGRPGA---PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Query: 296 ELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP-ARSELAP 354
GPQG G GP G G P D + G + + A +P AR P
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP-GAKGANGAPGIAGAPGFPGARGPSGP 420
Query: 355 PGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG- 413
G P PG G + P P G P + R R PGP G
Sbjct: 421 QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 414 ----GAMSAAGTRSPPGPAESARSRGP 436
G G+R PG A +GP
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGP 507
Score = 51.6 bits (122), Expect = 2e-06
Identities = 57/179 (31%), Positives = 66/179 (36%), Gaps = 29/179 (16%)
Query: 263 PPPPSLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 321
P +R T + G G P K GPS G +G+ G GP GP GP
Sbjct: 757 PGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP 816
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPG-ARDALSPDP--ERPCPGTRGVRSG 378
P D Q G P G A A+ + PPG A A P P PG +G R
Sbjct: 817 PGADG-----QPGAKGEP-GDA---GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG- 866
Query: 379 REGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 437
S P A G + PPGP G AG PPGPA +GPR
Sbjct: 867 -----SAGPPGATGFPGAAGRV------GPPGPSGN----AGPPGPPGPAGKEGGKGPR 910
Score = 50.1 bits (118), Expect = 5e-06
Identities = 62/211 (29%), Positives = 72/211 (34%), Gaps = 37/211 (17%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P + PP S R PG EG S +G +T GP G+ G
Sbjct: 995 GPPGPMGPPGLAG-PPGESGREGAPG-AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 1052
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
GP GP + G DR G P G P AR P G R E+
Sbjct: 1053 APGPVGPAGKSG----DRGETGPA-----GPAGPVGPVGARGPAGPQGPRGDKGETGEQG 1103
Query: 369 CPGTRGVR--SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPG---------------- 410
G +G R SG +G P P + GE P+ R PPG
Sbjct: 1104 DRGIKGHRGFSGLQG--PPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP 1161
Query: 411 -----PRGGAMSAAGTRSPPGPAESARSRGP 436
PRG AG PPGP GP
Sbjct: 1162 IGPPGPRG-RTGDAGPVGPPGPPGPPGPPGP 1191
Score = 47.8 bits (112), Expect = 2e-05
Identities = 55/186 (29%), Positives = 65/186 (34%), Gaps = 33/186 (17%)
Query: 263 PPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGP 321
PP P PG G+ P P +G P G G A GP GP G +GG
Sbjct: 849 PPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG-PPGPSGNAGPPGPPGPAGKEGGK 907
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG 381
P G P E+ PPG P E+ PG G +G G
Sbjct: 908 G----------------PRGETGPAGRPGEVGPPGPP---GPAGEKGSPGADG-PAGAPG 947
Query: 382 LLSPAPRSALGETAPT---AQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARS 433
+P P+ G+ Q R PGP G G A+G R PPGP
Sbjct: 948 --TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1005
Query: 434 RGPRPG 439
GP PG
Sbjct: 1006 AGP-PG 1010
Score = 47.4 bits (111), Expect = 3e-05
Identities = 48/163 (29%), Positives = 59/163 (36%), Gaps = 27/163 (16%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRV 338
G TG P GP KT GP G GR PGP G P +R + +
Sbjct: 539 GLTGSPGSP--GPDGKTGPPGPAGQDGR--------PGPPGPPGARGQAGV--------- 579
Query: 339 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPA-PRSALGETAPT 397
+G P A E G R P P P + +G +G PA P GE P
Sbjct: 580 -MGFPGPKGAAGEPGKAGERGVPGP-PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637
Query: 398 AQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRG 435
F+ + P GP G G G PGP+ + RG
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Score = 46.6 bits (109), Expect = 5e-05
Identities = 67/249 (26%), Positives = 79/249 (31%), Gaps = 54/249 (21%)
Query: 249 GLPEVRGAPNVHRLP-----PPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGS 303
G P +GA P P + R PG G G P GP+ K GP+G
Sbjct: 857 GAPGAKGARGSAGPPGATGFPGAAGRVGPPG--PSGNAGPPGPP--GPAGKEGGKGPRGE 912
Query: 304 LGRASLSGPFGP----------------GPQGGPPSRDRRHLGVQIGRVRVP-------- 339
G A G GP GP G P + + + Q G V +P
Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGF 972
Query: 340 LGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLL----------SPAP 387
G P + P GA P PG G SGREG SP
Sbjct: 973 PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Query: 388 RSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR----P 438
+ GET P PGP G G G P GP +RGP P
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 439 GWDTPEKGD 447
D E G+
Sbjct: 1093 RGDKGETGE 1101
Score = 41.2 bits (95), Expect = 0.002
Identities = 51/173 (29%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 265 PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGP-- 321
P +PT T G RGP G G G+ L GP G PGP G P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL 155
Query: 322 -----PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGA---RDALSPDPERPCPGTR 373
P + G + VP G P R PPGA + P E PG
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVP-GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGAS 214
Query: 374 GVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPG 426
G R P P G+ + R PPGP+ GA GT PG
Sbjct: 215 GPMGPRG---PPGPPGKNGDDGEAGKPGRPGERGPPGPQ-GARGLPGTAGLPG 263
Score = 31.2 bits (69), Expect = 2.2
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 21/92 (22%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG---------- 298
G+ RG + P PP +PG G P+ R P G
Sbjct: 1106 GIKGHRGFSGLQGPPGPPG----SPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP 1161
Query: 299 -GPQGSLGRASLSGPFG-PGPQG-----GPPS 323
GP G GR +GP G PGP G GPPS
Sbjct: 1162 IGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS 1193
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 57.8 bits (138), Expect = 2e-08
Identities = 75/229 (32%), Positives = 87/229 (37%), Gaps = 47/229 (20%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGP---QG 302
+TG+P +RG PP PS PGLT G GLP R P K E G P
Sbjct: 759 LTGMPGIRG-------PPGPSGDPGKPGLTGPQGPQGLPGTPGR-PGIKGEPGAPGKIVT 810
Query: 303 SLGRASLSGPFGPGPQG--GPPSRDRRHLGVQIGRVRVPLGSALP--YPARSEL------ 352
S G + L+ P PGP G GPP G P G A P P E+
Sbjct: 811 SEGSSMLTVPGPPGPPGAMGPP-----------GPPGAP-GPAGPAGLPGHQEVLNLQGP 858
Query: 353 -APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPG R P P PG RG EGL P P G ++ PPGP
Sbjct: 859 PGPPGPRGPPGPSIPGP-PGPRGPPG--EGL--PGPPGPPGSFLSNSETFLSGPPGPPGP 913
Query: 412 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGP 460
G G + PPGP +G PG+ T G +Q GP
Sbjct: 914 PG----PKGDQGPPGPRGHQGEQG-LPGFST--SGSSSFGLNLQGPPGP 955
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/177 (30%), Positives = 72/177 (40%), Gaps = 22/177 (12%)
Query: 272 TPGLTEGGGTGLPSKQRRGPS-PKTELGGP--QGSLGRASLSGPFGPGPQGGPP-SRDRR 327
TPG+ G G P Q GP K +G P +G +G+ GP GP + GPP S ++
Sbjct: 589 TPGIP--GPLGHPGPQ--GPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKG 644
Query: 328 HLGV-----QIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGL 382
G G VP GS P + P G + R G GV+ + +
Sbjct: 645 ERGAAGEPGPHGPPGVP-GSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPM 703
Query: 383 LSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
P P+ GE P R + PG RG GA+ G + GPA +GPR
Sbjct: 704 GPPGPKGDQGEKGP------RGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPR 754
Score = 49.3 bits (116), Expect = 8e-06
Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 49/176 (27%)
Query: 288 RRGPSPKTELGGP-----QGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLG 341
R P PK ++G P +G G + GP G PGPQG P + +G + P+G
Sbjct: 566 RGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQG--PKGQKGSVGDP--GMEGPMG 621
Query: 342 S---ALPYPARSELAPPGARD------ALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
P R E PPG+ + A P P P PG G S P+ + G
Sbjct: 622 QRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGP-PGVPG---------SVGPKGSSG 671
Query: 393 ETAPTAQFTFRKVRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRGPR 437
P + PPGP G G G PPGP +GPR
Sbjct: 672 SPGP---------QGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPR 718
Score = 48.1 bits (113), Expect = 2e-05
Identities = 53/171 (30%), Positives = 66/171 (38%), Gaps = 15/171 (8%)
Query: 277 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGR 335
E G G K RG + + GP G G G G PGPQG P + L ++G
Sbjct: 634 EAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGL 693
Query: 336 VRV-----PLGSALPYPARSELAPPGARDALSPDPE-RPCPGTRGVRSGREGLLSPA-PR 388
V P+G P + E P G L+ +P R PG G G +G + PA P
Sbjct: 694 PGVKGDKGPMGPPGPKGDQGEKGPRG----LTGEPGMRGLPGAVG-EPGAKGAMGPAGPD 748
Query: 389 SALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPG 439
G +R PPGP G G P GP + G RPG
Sbjct: 749 GHQGPRGEQGLTGMPGIRGPPGPSGDP-GKPGLTGPQGPQGLPGTPG-RPG 797
Score = 34.7 bits (78), Expect = 0.20
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 349 RSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSP-APRSALGETAPTAQFTFRKV 405
R P G + P +R PGT G+ G G P + ++G+ R
Sbjct: 566 RGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGR 625
Query: 406 RNPPGPRG----------GAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
P GPRG G AAG P GP S GP+ +P
Sbjct: 626 EGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSP 673
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 57.8 bits (138), Expect = 2e-08
Identities = 63/210 (30%), Positives = 77/210 (36%), Gaps = 34/210 (16%)
Query: 249 GLPE---VRGAPNVHRLPPPPSLRTPTPGLT-------------EGGGTGLPSKQRRGPS 292
GLP +RG LP PP R PGL E G G P K G +
Sbjct: 560 GLPGEVGMRGPQGPPGLPGPPG-RVGAPGLQGERGEKGTRGEKGERGLDGFPGKP--GDT 616
Query: 293 PKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 351
+ GP G G G GP GP G P S VQ ++ G+ P +
Sbjct: 617 GQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSV------VQQEGLKGEQGAPGPRGHQGA 670
Query: 352 LAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPGAR + P+ PG +G+R + + P LG P V PPGP
Sbjct: 671 PGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGP---PGVPGPPGP 727
Query: 412 RG-----GAMSAAGTRSPPGPAESARSRGP 436
G G + G PPGP GP
Sbjct: 728 GGSPGLPGEIGFPGKPGPPGPTGPPGKDGP 757
Score = 55.1 bits (131), Expect = 1e-07
Identities = 64/231 (27%), Positives = 86/231 (37%), Gaps = 67/231 (29%)
Query: 263 PPPPSLRTPTPGLTEGG-----GTGLPSKQRRG---------PSPKTELG--------GP 300
PPPP R PTPG + G P+ ++ P PK ++G GP
Sbjct: 453 PPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGP 512
Query: 301 QGSLGRASLSGPFGPGPQG--------GPPSRD----RRHLGVQIGRVRVP--LGSALPY 346
+G G + GPFG G +G GPP RD R ++G +P +G P
Sbjct: 513 KGEKGDVGI-GPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQ 571
Query: 347 PARSELAPPGARDALSPDPERPCPGTRGVR--------------SGREGLLSPA----PR 388
PPG A ER GTRG + +G++G P+ P+
Sbjct: 572 GPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQ 631
Query: 389 SALGETAPTA----------QFTFRKVRNPPGPRG--GAMSAAGTRSPPGP 427
G+ P Q + + PGPRG GA G R P GP
Sbjct: 632 GEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGP 682
Score = 42.7 bits (99), Expect = 7e-04
Identities = 59/204 (28%), Positives = 74/204 (36%), Gaps = 27/204 (13%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P LP P R P G +G P RG S L G +G G+
Sbjct: 1255 GEPGKAGEPG---LPGPEGARGPPGFKGHTGDSGAPGP--RGESGAMGLPGQEGLPGKDG 1309
Query: 309 LSGPFGPG-PQG--GPPSRDRRHLGVQIGRVRVPLGSALP--YPARSELAPPGARDALSP 363
+GP GP PQG GPP ++ G P S P ++ E PG L P
Sbjct: 1310 DTGPTGPQGPQGPRGPPGKNG-----SPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGP 1364
Query: 364 DPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------GA 415
PG +GV G+EG+ P G + + PPG +G G
Sbjct: 1365 RGPPGEPGEKGV-PGKEGV--PGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGH 1421
Query: 416 MSAAGTRSPPG-PAESARSRGPRP 438
G P G P E+ P P
Sbjct: 1422 KGHTGLMGPQGLPGENGPVGPPGP 1445
Score = 41.6 bits (96), Expect = 0.002
Identities = 56/200 (28%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQR----RGPSPKTELGGPQGSL 304
G+P G P P PP G G P K+ +GPS + G +G
Sbjct: 1189 GVPGFMGPPGN---PGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKE 1245
Query: 305 GRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGAR----D 359
GR GP G PG G P LP P + PPG + D
Sbjct: 1246 GRDGKPGPPGEPGKAGEP---------------------GLPGPEGAR-GPPGFKGHTGD 1283
Query: 360 ALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMS 417
+ +P P R G G+ G+EGL P G T P + P GPRG G
Sbjct: 1284 SGAPGP-RGESGAMGL-PGQEGL--PGKDGDTGPTGP---------QGPQGPRGPPGKNG 1330
Query: 418 AAGTRSPPGPAESARSRGPR 437
+ G+ PGP+ + +G +
Sbjct: 1331 SPGSPGEPGPSGTPGQKGSK 1350
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/230 (26%), Positives = 82/230 (35%), Gaps = 36/230 (15%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P + G + P PP + P PG GG GLP + G K GP G G+
Sbjct: 702 GPPGIPGLLGLQGPPGPPGVPGP-PG--PGGSPGLPGEI--GFPGKPGPPGPTGPPGKDG 756
Query: 309 LSGPFG-PGPQGGPPSRD----------RRHLGVQ--IGRVRVPLGSALP----YPA--- 348
+GP G PG +G P R R +G Q GR + LP +P
Sbjct: 757 PNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRG 816
Query: 349 -------RSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFT 401
+ EL PG + E G G+ G L +P PR GE P +
Sbjct: 817 EKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGL-PGTTSLFTPHPRMP-GEQGPKGEKG 874
Query: 402 FRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHL 449
+ PG +G G + G PPG + G P H+
Sbjct: 875 DPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHV 924
Score = 40.4 bits (93), Expect = 0.004
Identities = 55/208 (26%), Positives = 71/208 (34%), Gaps = 25/208 (12%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G RG P + PP G + G G+P G T L GPQG G
Sbjct: 1390 GFKGERGDPGIKGDKGPPG------GKGQPGDPGIP-----GHKGHTGLMGPQGLPGENG 1438
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGR--VRVPLGSALPYPARSELA--PPGARDALSPD 364
GP GP Q G P ++ R ++ LG L LA PP +
Sbjct: 1439 PVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGR 1498
Query: 365 PERPCPGTRGVRSGREGLLS----PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
P P P + GR G + P G + P R + PG G + G
Sbjct: 1499 PGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPG--VGLRG 1556
Query: 421 TRSPPG----PAESARSRGPRPGWDTPE 444
PPG P E ++ PG P+
Sbjct: 1557 EMGPPGIPGQPGEPGYAKDGLPGIPGPQ 1584
Score = 39.3 bits (90), Expect = 0.008
Identities = 53/187 (28%), Positives = 64/187 (34%), Gaps = 21/187 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTP----TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSL 304
G P GAP PP S+ P TPG G + + P P GP+G
Sbjct: 919 GAPGHVGAPGPSG--PPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV----GPRGDP 972
Query: 305 GRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD 364
G L GP G G G P R L +G +A SE G +
Sbjct: 973 GAPGLPGPPGKGKDGEPGLRGSPGLPGPLG-----TKAACGKVRGSENCALGGQCVKGDR 1027
Query: 365 PERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAA 419
PG+ G R G G+ P G R + PGP+G GA
Sbjct: 1028 GAPGIPGSPGSR-GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNP 1086
Query: 420 GTRSPPG 426
G R PPG
Sbjct: 1087 GERGPPG 1093
Score = 38.5 bits (88), Expect = 0.014
Identities = 57/203 (28%), Positives = 69/203 (33%), Gaps = 26/203 (12%)
Query: 262 LPPPPSLRTPTPGLTEGGGTGLP-SKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG 319
LP P L+ L G TG P +K + G G G+ G GP G PG G
Sbjct: 878 LPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVG 937
Query: 320 GPPSRDRRHLGVQIGR--VRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRS 377
P R + G GS P R + PG L P + G G+R
Sbjct: 938 APGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPG----LPGPPGKGKDGEPGLR- 992
Query: 378 GREGLLSP------------APRSALGETAPTAQFTFRKVRNPPGPRG----GAMSAAGT 421
G GL P + ALG + PG RG G G
Sbjct: 993 GSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGP 1052
Query: 422 RSPPGPAESARSRGPRPGWDTPE 444
PPG S SRG PG+ P+
Sbjct: 1053 SGPPGDKGSPGSRG-LPGFPGPQ 1074
Score = 38.1 bits (87), Expect = 0.018
Identities = 54/213 (25%), Positives = 67/213 (31%), Gaps = 42/213 (19%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLP----------SKQRRGPSPKTELG 298
GLP + G +P P E G GLP S+ RG +
Sbjct: 1123 GLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEV--- 1179
Query: 299 GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGAR 358
G +G G + G GP GPP D G+ G+A P + G
Sbjct: 1180 GQKGDQGHPGVPGFMGPPGNPGPPGAD----GI--------AGAAGPPGIQGSPGKEGPP 1227
Query: 359 DALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNP---------- 408
P PG G + GR+G P P G+ R P
Sbjct: 1228 GPQGPSGLPGIPGEEG-KEGRDG--KPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDS 1284
Query: 409 --PGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
PGPRG GAM G PG GP+
Sbjct: 1285 GAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQ 1317
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.4 bits (137), Expect = 3e-08
Identities = 59/201 (29%), Positives = 72/201 (35%), Gaps = 19/201 (9%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTE-LGGPQGSLGRASLSGPF 313
G P +P R PT + G G P + G +P + GP+GS G +GP
Sbjct: 747 GGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Query: 314 G-------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G PG G P + R + G P G A P PPG + E
Sbjct: 807 GPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP-GVAGPPGGSGPAGPPGPQGVKG---E 862
Query: 367 RPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTR 422
R PG G G GL P P + G P PPGP G GA + G
Sbjct: 863 RGSPGGPGAAGFPGARGL--PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Query: 423 SPPGPAESARSRGPRPGWDTP 443
P G A +G PG P
Sbjct: 921 GPKGDAGQPGEKG-SPGAQGP 940
Score = 53.1 bits (126), Expect = 5e-07
Identities = 62/198 (31%), Positives = 72/198 (36%), Gaps = 28/198 (14%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P +G P + P PT + G TG P Q P T GGP G G+
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT--GGPPGENGKPG 657
Query: 309 LSGPFG----PGPQGG------PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGAR 358
GP G PG GG P R L G +R G P + PPG
Sbjct: 658 EPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPG-LRGGAGPPGPEGGKGAAGPPG-- 714
Query: 359 DALSPDPERPCPGTRGVRSGREGLLSPAPRSALGET-APTAQFTFRKVRNPPGPRGGAMS 417
P PG +G+ R GL SP P+ GE P A V GPRG
Sbjct: 715 ----PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD----GVPGKDGPRG---- 762
Query: 418 AAGTRSPPGPAESARSRG 435
G PPGPA +G
Sbjct: 763 PTGPIGPPGPAGQPGDKG 780
Score = 52.4 bits (124), Expect = 9e-07
Identities = 59/214 (27%), Positives = 75/214 (35%), Gaps = 37/214 (17%)
Query: 255 GAPNVHRLPPPPSLRTPT-----PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASL 309
G P LP PP ++ P PG+ G G R G +T G +G G
Sbjct: 237 GRPGERGLPGPPGIKGPAGIPGFPGMK--GHRGFDG--RNGEKGETGAPGLKGENGLPGE 292
Query: 310 SGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
+G GP GP+G P R R L G G+ + + PPG P
Sbjct: 293 NGAPGPMGPRGAPGERGRPGLPGAAGA----RGNDGARGSDGQPGPPG------PPGTAG 342
Query: 369 CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------------- 413
PG+ G + SP A G+ + PPGP G
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 414 --GAMSAAGTRSPPGPAESARSRGPRPGWDTPEK 445
GA G R PPGPA + + G R G P K
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGK 436
Score = 52.0 bits (123), Expect = 1e-06
Identities = 64/196 (32%), Positives = 77/196 (39%), Gaps = 37/196 (18%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
+ G P + GA R PP P+ PGL GG G P K P GP+G G
Sbjct: 403 IPGAPGLMGA----RGPPGPAGANGAPGLR--GGAGEPGKNGAKGEP-----GPRGERGE 451
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
A + G PG + G +D G P + LP A E PG R P+
Sbjct: 452 AGIPGV--PGAK-GEDGKD--------GSPGEPGANGLP-GAAGERGAPGFRGPAGPN-- 497
Query: 367 RPCPGTRGVRSGREGLLSPA-PRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRS 423
PG +G +G G PA PR A GE V PG RG G+ G+
Sbjct: 498 -GIPGEKG-PAGERGAPGPAGPRGAAGEPGRDG------VPGGPGMRGMPGSPGGPGSDG 549
Query: 424 PPGPAESARSRGPRPG 439
PGP S G RPG
Sbjct: 550 KPGPPGSQGESG-RPG 564
Score = 51.6 bits (122), Expect = 2e-06
Identities = 60/201 (29%), Positives = 69/201 (34%), Gaps = 28/201 (13%)
Query: 263 PPPPSLRTPTPGLT----EGGGTGLPSKQRRGPSPKTELGGP-----QGSLGRASLSGPF 313
PP P TPGL E GG G P + K E GGP G G +GP
Sbjct: 712 PPGPPGAAGTPGLQGMPGERGGLGSPGPK----GDKGEPGGPGADGVPGKDGPRGPTGPI 767
Query: 314 GPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTR 373
GP G P + + P GS R E PPG + PG +
Sbjct: 768 GPPGPAGQPGDKGEGGAPGLPGIAGPRGSP---GERGETGPPGPAGFPGAPGQNGEPGGK 824
Query: 374 GVRS--GREGLLSP----APRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGP 427
G R G +G P P G P + R PG G A G R PGP
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAA-GFPGARGLPGP 883
Query: 428 AESARSRGP-----RPGWDTP 443
S + GP PG D P
Sbjct: 884 PGSNGNPGPPGPSGSPGKDGP 904
Score = 51.2 bits (121), Expect = 2e-06
Identities = 61/228 (26%), Positives = 78/228 (34%), Gaps = 40/228 (17%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
+ G+P +G P P E G G RGP+ + G +G G
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGF-----RGPAGPNGIPGEKGPAGE 508
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIG-RVRVPLGSALPYPARSELAPPGAR-DALSPD 364
GP GP G P RD GV G +R GS + + PPG++ ++ P
Sbjct: 509 RGAPGPAGPRGAAGEPGRD----GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG 564
Query: 365 PERP--------------------CPGTRGVRSGREGLLSPAPRSALGET------APTA 398
P P PG G R G G P GET PT
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Query: 399 QFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKG 446
+ PPGP+ G GT PPG E+ + P P D G
Sbjct: 625 PGGDKGDTGPPGPQ-GLQGLPGTGGPPG--ENGKPGEPGPKGDAGAPG 669
Score = 50.1 bits (118), Expect = 5e-06
Identities = 61/197 (30%), Positives = 70/197 (35%), Gaps = 42/197 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P G P LP PP PG G +G P K P P G P G
Sbjct: 867 GGPGAAGFPGARGLPGPPG-SNGNPG--PPGPSGSPGKDGP-PGPAGNTGAP----GSPG 918
Query: 309 LSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD 364
+SGP G PG +G P ++ PLG A AR PPG
Sbjct: 919 VSGPKGDAGQPGEKGSPGAQGPPG-------APGPLGIAGITGARGLAGPPGM------- 964
Query: 365 PERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSP 424
PG RG SP P+ GE+ R PPGP+ G AGT
Sbjct: 965 -----PGPRG---------SPGPQGVKGESGKPGANGLSGERGPPGPQ-GLPGLAGTAGE 1009
Query: 425 PGPAESARSRGPRPGWD 441
PG + S G PG D
Sbjct: 1010 PGRDGNPGSDG-LPGRD 1025
Score = 49.7 bits (117), Expect = 6e-06
Identities = 64/205 (31%), Positives = 77/205 (37%), Gaps = 31/205 (15%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQR-RGPSPKTELGGPQGSLG 305
V G P +RG P P P E G G P RG GP+G+ G
Sbjct: 529 VPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDG 588
Query: 306 ----RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDAL 361
GP GPGPQG PP ++ G Q P G P + + PPG
Sbjct: 589 APGKNGERGGPGGPGPQG-PPGKNGE-TGPQ-----GPPGPTGPGGDKGDTGPPG----- 636
Query: 362 SPDPERPCPGTRGV--RSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----G 414
P + PGT G +G+ G P P+ G AP A + PG RG G
Sbjct: 637 -PQGLQGLPGTGGPPGENGKPG--EPGPKGDAG--APGAPGG-KGDAGAPGERGPPGLAG 690
Query: 415 AMSAAGTRSPPGPAESARSRGPRPG 439
A G PPGP + GP PG
Sbjct: 691 APGLRGGAGPPGPEGGKGAAGP-PG 714
Score = 46.6 bits (109), Expect = 5e-05
Identities = 61/221 (27%), Positives = 69/221 (31%), Gaps = 30/221 (13%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLP--SKQRRGPSPK--TELGGPQG 302
+ G+ RG +P P P E G G S +R P P+ L G G
Sbjct: 949 IAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG 1008
Query: 303 SLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA--------RSELA 353
GR G G PG G P + R G P P P R E
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESG 1068
Query: 354 PPGARDALSPDPERPCPGTRGVR-----SGREGLLS-------PAPRSALGETAPTAQFT 401
P G A P R PG +G R +G G P A G P Q
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 402 FRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR 437
P GPRG G GT PGP RG R
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR 1169
Score = 42.4 bits (98), Expect = 0.001
Identities = 61/235 (25%), Positives = 75/235 (31%), Gaps = 57/235 (24%)
Query: 245 GVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSL 304
G + G P G P PP P + PG G P Q GP + GP G
Sbjct: 167 GGLAGYPGPAGPPG----PPGPPGTSGHPG-----SPGSPGYQ--GPPGEPGQAGPSGPP 215
Query: 305 GRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPA---------------- 348
G GP GP + G R R G +P + PA
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRP-----GERGLPGPPGIKGPAGIPGFPGMKGHRGFDG 270
Query: 349 ----RSELAPPGARDALSPDPERPCPGTRGVRS-----GREGLLSPA-------PRSALG 392
+ E PG + E PG G R GR GL A R + G
Sbjct: 271 RNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDG 330
Query: 393 ETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPG 439
+ P PG +G G+ A G R PGP A ++GP PG
Sbjct: 331 QPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP-PG 384
Score = 38.1 bits (87), Expect = 0.018
Identities = 59/213 (27%), Positives = 73/213 (34%), Gaps = 32/213 (15%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTG----LPSKQRRGPSPKTELGGPQGSL 304
G+P G P + P P P PG+ E TG P +GG G
Sbjct: 115 GIPGRNGDPGIPGQPGSPGSPGP-PGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173
Query: 305 GRASLSGPFGP----GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
G A GP GP G G P S + + G+ P G P P + P +D
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAG-PSGPPGP-PGAIGPSGPAGKDG 231
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSAL-------------GETAPTAQFTFRKVRN 407
S P R PG RG+ G G+ PA GE T +
Sbjct: 232 ESGRPGR--PGERGL-PGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG 288
Query: 408 PPGPRG-----GAMSAAGTRSPPGPAESARSRG 435
PG G G A G R PG +A +RG
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARG 321
Score = 37.4 bits (85), Expect = 0.031
Identities = 50/179 (27%), Positives = 58/179 (32%), Gaps = 53/179 (29%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRV 338
G G P SP G QG++G +GP GP GPP +D
Sbjct: 1107 GHRGFPGNPGAPGSPGP--AGQQGAIGSPGPAGPRGPVGPSGPPGKDGT----------- 1153
Query: 339 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 398
S P P + PPG R G RG R G EG SP G
Sbjct: 1154 ---SGHPGP----IGPPGPR------------GNRGER-GSEG--SPGHPGQPG------ 1185
Query: 399 QFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQED 457
PPGP G G G A A G + G P GD + F + D
Sbjct: 1186 ---------PPGPPGAPGPCCG---GVGAAAIAGIGGEKAGGFAPYYGDEPMDFKINTD 1232
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 56.2 bits (134), Expect = 6e-08
Identities = 72/230 (31%), Positives = 89/230 (38%), Gaps = 57/230 (24%)
Query: 241 TTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 300
TT + G+P RG + LP P TPG + GP+ T GP
Sbjct: 988 TTGQRGIVGMPGQRGERGMPGLPGPAG----TPG-------------KVGPTGATGDKGP 1030
Query: 301 QGSLGRASLSGPFG-PGPQG-----GPPSRDRRHLGVQIGRVRVPLGSALPYPA---RSE 351
G +G +GP G PGP+G G P RD G V P PA S+
Sbjct: 1031 PGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD--------GAVGERGDRGDPGPAGLPGSQ 1082
Query: 352 LAP--PGARDALSPDPERPCPGTRGV-----RSGREGLLSP-APRSALGETAPTAQ---- 399
AP PG A +R PG+RG R+G+ GL P PR G+
Sbjct: 1083 GAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQK 1142
Query: 400 ----FT-FRKVRNPPGPRGGAMSAA-----GTRSPPGP-AESARSRGPRP 438
FT + + PPGP G SA G R PPGP S + P P
Sbjct: 1143 GHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGP 1192
Score = 53.5 bits (127), Expect = 4e-07
Identities = 60/201 (29%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRA 307
G P RGA H +P P P L G +G P +G + T GP+G G+
Sbjct: 351 GAPGQRGA---HGMPGKPG---PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQR 404
Query: 308 SLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPER 367
+GP PGP G P L IG P G+ P + PPG+ +
Sbjct: 405 GETGP--PGPVGSP------GLPGAIGTDGTP-GAKGPTGSPGTSGPPGSAGPPGSPGPQ 455
Query: 368 PCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTR 422
G +G+R G+ G P GE P + ++ P GP G G GT
Sbjct: 456 GSTGPQGIR-GQPG--DPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTV 512
Query: 423 SPPGPAESARSRGPR--PGWD 441
PPGP + G R PG D
Sbjct: 513 GPPGPVGERGAPGNRGFPGSD 533
Score = 53.1 bits (126), Expect = 5e-07
Identities = 65/237 (27%), Positives = 78/237 (32%), Gaps = 68/237 (28%)
Query: 253 VRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG-------------- 298
+RG P LP P E G G+P QR P E+G
Sbjct: 607 IRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPG-QRGAPGKDGEVGPSGPVGPPGLAGER 665
Query: 299 ---GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 355
GP G G L GP GP +GG P G VP P
Sbjct: 666 GEQGPPGPTGFQGLPGPPGPPGEGGKP-----------GDQGVP-------------GDP 701
Query: 356 GARDALSPDPERPCPGTRGVRS-----GREGLL----------SPAPRSALGETAPTAQF 400
GA L P ER PG RG G +G+ SP P G+T P
Sbjct: 702 GAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQ 761
Query: 401 TF---RKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG-------PRPGWDTPEKGD 447
R + PGP+G G + G A + +RG P P T EKG+
Sbjct: 762 GMPGERGIAGTPGPKGD-RGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE 817
Score = 49.7 bits (117), Expect = 6e-06
Identities = 64/203 (31%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 255 GAPNVHRLPPPPSLRTPT--PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGP 312
G+P L P P PGL G GT P P +G P G G +GP
Sbjct: 873 GSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVG-PPGPAGAPGPAGP 931
Query: 313 FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGT 372
G + GPP R G GRV G A P + PG + P P+ P PG
Sbjct: 932 LGEPGKEGPPGL-RGDPGSH-GRVG-DRGPAGPPGGPGDKGDPG--EDGQPGPDGP-PGP 985
Query: 373 RGVRSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPG 426
G +G+ G++ P R GE R + PGP G G A G + PPG
Sbjct: 986 AGT-TGQRGIVGMPGQR---GE---------RGMPGLPGPAGTPGKVGPTGATGDKGPPG 1032
Query: 427 PAESARSRGP--RPGWDTPEKGD 447
P S GP PG + P D
Sbjct: 1033 PVGPPGSNGPVGEPGPEGPAGND 1055
Score = 48.1 bits (113), Expect = 2e-05
Identities = 53/193 (27%), Positives = 66/193 (34%), Gaps = 33/193 (17%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTP--TPGLTEGGGT-GLPSKQRRGPSPKTELGGPQGS 303
+TGLP +G H P P TPG T G G+P ++ +P + G +G
Sbjct: 724 ITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPK--GDRGG 781
Query: 304 LGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
+G G G G P PLG P E PG R + P
Sbjct: 782 IGEKGAEGTAGNDGARGLPG---------------PLGPPGPAGPTGEKGEPGPRGLVGP 826
Query: 364 DPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRS 423
R PG+RG P A+G P V+ PG G G
Sbjct: 827 PGSRGNPGSRG---------ENGPTGAVGFAGPQGPDGQPGVKGEPGEPG----QKGDAG 873
Query: 424 PPGPAESARSRGP 436
PGP A S GP
Sbjct: 874 SPGPQGLAGSPGP 886
Score = 47.4 bits (111), Expect = 3e-05
Identities = 58/182 (31%), Positives = 70/182 (38%), Gaps = 31/182 (17%)
Query: 263 PPPPSLRTPTPGLTEGGGT-GLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 321
PP P +PGL GT G P +GP+ GP GS G P PGPQG
Sbjct: 409 PPGP---VGSPGLPGAIGTDGTPGA--KGPTGSPGTSGPPGSAGP-----PGSPGPQGST 458
Query: 322 PSRDRRHLGVQIGRVRVP--LGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGR 379
+ R Q G VP G A P + E P G + + P PG G R R
Sbjct: 459 GPQGIRG---QPGDPGVPGFKGEAGP---KGEPGPHGIQGPIGP------PGEEGKRGPR 506
Query: 380 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGP--R 437
+ P +GE F PGP+G A G R P G + S+G R
Sbjct: 507 GDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG----AQGERGPVGSSGPKGSQGDPGR 562
Query: 438 PG 439
PG
Sbjct: 563 PG 564
Score = 44.7 bits (104), Expect = 2e-04
Identities = 57/198 (28%), Positives = 66/198 (33%), Gaps = 32/198 (16%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTP----TPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 302
V G P G P P P L P GL E G G G GPQG
Sbjct: 166 VPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQG 225
Query: 303 SLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
G+ +GP GP + G P P+G P +R PPG
Sbjct: 226 LQGQQGGAGPTGPPGEPGDPG---------------PMG---PIGSRGPEGPPGKP---G 264
Query: 363 PDPERPCPGTRGVRSGREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAA 419
D E PG G G G SP R G R + GP+G GA +
Sbjct: 265 EDGE---PGRNG-NPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSK 320
Query: 420 GTRSPPGPAESARSRGPR 437
G P GP + GPR
Sbjct: 321 GEAGPTGPMGAMGPLGPR 338
Score = 43.5 bits (101), Expect = 4e-04
Identities = 57/198 (28%), Positives = 69/198 (34%), Gaps = 18/198 (9%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
GL +G P P P + G G P K P G G +G A
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRN--GNPGEVGFAG 282
Query: 309 LSGPFG-PGPQGGPPSRDRR-HLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G G PG G P + R H G++ P G ++ E P G A+ P
Sbjct: 283 SPGARGFPGAPGLPGLKGHRGHKGLE-----GPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337
Query: 367 RPCPGTRGVRSGREGLLSPAPRSA---LGETAPTAQFTFRKVRNPPGPRG--GAMSAAGT 421
R PG RG R G +G +P R A G+ P PG G G G
Sbjct: 338 RGMPGERG-RLGPQG--APGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGA 394
Query: 422 RSPPGPAESARSRGPRPG 439
R P GP GP PG
Sbjct: 395 RGPEGPQGQRGETGP-PG 411
Score = 39.7 bits (91), Expect = 0.006
Identities = 53/192 (27%), Positives = 68/192 (35%), Gaps = 48/192 (25%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR----------- 327
G G P RG L GP+G+ G G GP G P R
Sbjct: 519 GERGAPGN--RGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTG 576
Query: 328 HLGVQ-----IGRVRVPLGSALPYPARS--------ELAPPGARDALSPDPERP------ 368
+ GVQ +G + P P P S + PG + + S DP +P
Sbjct: 577 NPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS-SGDPGKPGEAGNA 635
Query: 369 -CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGP 427
PG RG G++G + P+ G P R + PPGP G G PPGP
Sbjct: 636 GVPGQRGA-PGKDGEVGPS-----GPVGPPGLAGERGEQGPPGPTG----FQGLPGPPGP 685
Query: 428 AESARSRGPRPG 439
G +PG
Sbjct: 686 P----GEGGKPG 693
Score = 35.8 bits (81), Expect = 0.090
Identities = 44/167 (26%), Positives = 58/167 (34%), Gaps = 26/167 (15%)
Query: 288 RRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQGGP-PSRDRRHLGVQIGRV 336
R GP+ GP+G G GP G PG G P P H G
Sbjct: 130 RPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPG------ 183
Query: 337 RVPLGSALPYPAR----SELAPPGARDALSPDPERPC--PGTRGVRSGREGLLSPAPRSA 390
P G + P+ A+ E + G++ L P P G +G++ + G P
Sbjct: 184 --PDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGE 241
Query: 391 LGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 437
G+ P R PPG + G G PG A S G R
Sbjct: 242 PGDPGPMGPIGSRGPEGPPG-KPGEDGEPGRNGNPGEVGFAGSPGAR 287
Score = 35.4 bits (80), Expect = 0.12
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 299 GPQGSLGRASLSGPFGP-GPQG--GPPSRDRR--HLG-VQIGRVRVPLGSALPYPARSEL 352
GP G G A + GPFGP GP G GP ++ LG + VR +G A P E
Sbjct: 1158 GPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEP 1217
Query: 353 APPGARDALSPDPERPCPGTRGVRSGR--EGLLSPAPRSALGETAP 396
PPG P P G G E + P P + AP
Sbjct: 1218 GPPG-----PPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAP 1258
Score = 34.7 bits (78), Expect = 0.20
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 25/120 (20%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-------GPSPKTELGGP------ 300
RG + LP PP E G G+P GPS K GP
Sbjct: 1145 RGFTGLQGLPGPPGPNG------EQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198
Query: 301 ---QGSLGRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
+GS+G A GP G PGP G GPP LG +G + LP + AP
Sbjct: 1199 PGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAP 1258
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 55.8 bits (133), Expect = 8e-08
Identities = 71/246 (28%), Positives = 87/246 (35%), Gaps = 71/246 (28%)
Query: 255 GAPNVHRLPPPPSLR----------TPTPGLTEG--------------GGTGLPSKQRRG 290
G+P + LP PP L P P +G G GLP +
Sbjct: 646 GSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSA 705
Query: 291 PSP-KTELGGPQGSLGRASLSGPFG-PGPQG--------------GPPSRD--------- 325
+P + L GP+GS G + GP G PGP+G GPP R
Sbjct: 706 GNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQV 765
Query: 326 -----RRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 380
+ H ++ P A P R PG P E PG G+R G
Sbjct: 766 CMRVIQEHFAEMAASLKRPDSGATGLPGR-----PGPPGPPGPPGENGFPGQMGIR-GLP 819
Query: 381 GLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARS----- 433
G+ P ALG P + R PPG RG G A G PGPA R+
Sbjct: 820 GI--KGPPGALGLRGPKGDLGEKGERGPPG-RGPNGLPGAIGLPGDPGPASYGRNGRDGE 876
Query: 434 RGPRPG 439
RGP PG
Sbjct: 877 RGP-PG 881
Score = 45.8 bits (107), Expect = 9e-05
Identities = 61/188 (32%), Positives = 66/188 (35%), Gaps = 29/188 (15%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLP-SKQRRGPSPKTELGGPQGSLGR 306
TG P G P P + P + G GLP S+ GP L G GSLG
Sbjct: 591 TGAP---GKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGS 647
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
L G PGP G P + R G V P G A E G R L D
Sbjct: 648 PGLPGL--PGPPGLPGMKGDR------GVVGEP-GPKGEQGASGEEGEAGERGELG-DIG 697
Query: 367 RPCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAG 420
P P G GL P R G P R PPGPRG GA G
Sbjct: 698 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGP---------RGPPGPRGVQGEQGATGLPG 748
Query: 421 TRSPPGPA 428
+ PPG A
Sbjct: 749 VQGPPGRA 756
Score = 43.5 bits (101), Expect = 4e-04
Identities = 67/237 (28%), Positives = 84/237 (35%), Gaps = 46/237 (19%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTP--TPG-LTEGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
G P GAP P L P +PG + G G P P + GP G G
Sbjct: 308 GEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPG 367
Query: 306 RASLSGPFG-------PGPQGGP----PSRDRRHLGVQIGRVRVPLGSALP-----YP-- 347
A L G G PG +G P P R +G G P +A P YP
Sbjct: 368 TAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCP--NACPPGRSGYPGL 425
Query: 348 --------ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPT 397
A+ E+ PG + + ++ G G + G +GL R G
Sbjct: 426 PGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGL-----RGITGIVGDK 480
Query: 398 AQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-----PGWDTPEKGD 447
+ R + PGP+G GA G R PPG A RG PG P KGD
Sbjct: 481 GEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGP-KGD 536
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 193 GKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSNPLPLTTTAGVVTGLPE 252
G+ ++ P G P H+ ++ +++ +H ++ L + TGLP
Sbjct: 739 GEQGATGLPGVQGPPGRAPTDQHIKQVC---MRVIQEHFAEMAASLKRPDSGA--TGLPG 793
Query: 253 VRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGP 312
G P PP P PG + G GLP +GP L GP+G LG GP
Sbjct: 794 RPGPPG----PPGPPGENGFPG--QMGIRGLPGI--KGPPGALGLRGPKGDLGEKGERGP 845
Query: 313 FGPGPQGGP 321
G GP G P
Sbjct: 846 PGRGPNGLP 854
Score = 37.7 bits (86), Expect = 0.024
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 42/161 (26%)
Query: 289 RGPSPKTELGGPQGSLGRASLSGPFGP-GPQG--GPPSRDRRHLGVQIGRVRVPLGSALP 345
RGP + GP G G + G G GP+G GPP P G
Sbjct: 268 RGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPG---------------PAGEPGK 312
Query: 346 YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKV 405
A + PGA PD G++G + G G+ P R F R +
Sbjct: 313 PGAPGKPGTPGADGLTGPDGSPGSIGSKG-QKGEPGV--PGSRG----------FPGRGI 359
Query: 406 RNPPGPRG-----------GAMSAAGTRSPPGPAESARSRG 435
PPGP G G + G R PPGP RG
Sbjct: 360 PGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRG 400
Score = 34.7 bits (78), Expect = 0.20
Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 277 EGGGTGLPS----KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 332
E G GLP + +RGP + G +G+ G + G GP G P D
Sbjct: 491 EPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVD------- 543
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
GR +P G + PPG PG +GV + +P +G
Sbjct: 544 -GRDGIP-GMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMG 601
Query: 393 ETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAES 430
+ Q + PPG G G G+R GP S
Sbjct: 602 NSGKPGQ------QGPPGEVGPRGPQGLPGSRGELGPVGS 635
Score = 32.3 bits (72), Expect = 1.00
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 33/192 (17%)
Query: 243 TAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 302
TAG+ L V + R PP P P T G G P P ++ G G
Sbjct: 368 TAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPG 427
Query: 303 SLGRASLSGPFG-PGPQGGPPSR-DRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
G G G PG QG D+ LG ++G PPGA+
Sbjct: 428 MRGHKGAKGEIGEPGRQGHKGEEGDQGELG-EVG----------------AQGPPGAQGL 470
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GA 415
G +G R G +G P P+ G Q R PPG G GA
Sbjct: 471 RGITGIVGDKGEKGAR-GLDG--EPGPQGLPGAPGDQGQ------RGPPGEAGPKGDRGA 521
Query: 416 MSAAGTRSPPGP 427
A G PGP
Sbjct: 522 EGARGIPGLPGP 533
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 55.8 bits (133), Expect = 8e-08
Identities = 71/246 (28%), Positives = 87/246 (35%), Gaps = 71/246 (28%)
Query: 255 GAPNVHRLPPPPSLR----------TPTPGLTEG--------------GGTGLPSKQRRG 290
G+P + LP PP L P P +G G GLP +
Sbjct: 403 GSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSA 462
Query: 291 PSP-KTELGGPQGSLGRASLSGPFG-PGPQG--------------GPPSRD--------- 325
+P + L GP+GS G + GP G PGP+G GPP R
Sbjct: 463 GNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQV 522
Query: 326 -----RRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 380
+ H ++ P A P R PG P E PG G+R G
Sbjct: 523 CMRVIQEHFAEMAASLKRPDSGATGLPGR-----PGPPGPPGPPGENGFPGQMGIR-GLP 576
Query: 381 GLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARS----- 433
G+ P ALG P + R PPG RG G A G PGPA R+
Sbjct: 577 GI--KGPPGALGLRGPKGDLGEKGERGPPG-RGPNGLPGAIGLPGDPGPASYGRNGRDGE 633
Query: 434 RGPRPG 439
RGP PG
Sbjct: 634 RGP-PG 638
Score = 45.8 bits (107), Expect = 9e-05
Identities = 61/188 (32%), Positives = 66/188 (35%), Gaps = 29/188 (15%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLP-SKQRRGPSPKTELGGPQGSLGR 306
TG P G P P + P + G GLP S+ GP L G GSLG
Sbjct: 348 TGAP---GKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGS 404
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
L G PGP G P + R G V P G A E G R L D
Sbjct: 405 PGLPGL--PGPPGLPGMKGDR------GVVGEP-GPKGEQGASGEEGEAGERGELG-DIG 454
Query: 367 RPCPGTRGVRSGREGLLSP-APRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAG 420
P P G GL P R G P R PPGPRG GA G
Sbjct: 455 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGP---------RGPPGPRGVQGEQGATGLPG 505
Query: 421 TRSPPGPA 428
+ PPG A
Sbjct: 506 VQGPPGRA 513
Score = 43.5 bits (101), Expect = 4e-04
Identities = 67/237 (28%), Positives = 84/237 (35%), Gaps = 46/237 (19%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTP--TPG-LTEGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
G P GAP P L P +PG + G G P P + GP G G
Sbjct: 65 GEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPG 124
Query: 306 RASLSGPFG-------PGPQGGP----PSRDRRHLGVQIGRVRVPLGSALP-----YP-- 347
A L G G PG +G P P R +G G P +A P YP
Sbjct: 125 TAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCP--NACPPGRSGYPGL 182
Query: 348 --------ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPT 397
A+ E+ PG + + ++ G G + G +GL R G
Sbjct: 183 PGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGL-----RGITGIVGDK 237
Query: 398 AQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR-----PGWDTPEKGD 447
+ R + PGP+G GA G R PPG A RG PG P KGD
Sbjct: 238 GEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGP-KGD 293
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 193 GKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSNPLPLTTTAGVVTGLPE 252
G+ ++ P G P H+ ++ +++ +H ++ L + TGLP
Sbjct: 496 GEQGATGLPGVQGPPGRAPTDQHIKQVC---MRVIQEHFAEMAASLKRPDSGA--TGLPG 550
Query: 253 VRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGP 312
G P PP P PG + G GLP +GP L GP+G LG GP
Sbjct: 551 RPGPPG----PPGPPGENGFPG--QMGIRGLPGI--KGPPGALGLRGPKGDLGEKGERGP 602
Query: 313 FGPGPQGGP 321
G GP G P
Sbjct: 603 PGRGPNGLP 611
Score = 38.1 bits (87), Expect = 0.018
Identities = 45/162 (27%), Positives = 56/162 (34%), Gaps = 42/162 (25%)
Query: 288 RRGPSPKTELGGPQGSLGRASLSGPFGP-GPQG--GPPSRDRRHLGVQIGRVRVPLGSAL 344
+RGP + GP G G + G G GP+G GPP P G
Sbjct: 24 QRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPG---------------PAGEPG 68
Query: 345 PYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 404
A + PGA PD G++G + G G+ P R F R
Sbjct: 69 KPGAPGKPGTPGADGLTGPDGSPGSIGSKG-QKGEPGV--PGSRG----------FPGRG 115
Query: 405 VRNPPGPRG-----------GAMSAAGTRSPPGPAESARSRG 435
+ PPGP G G + G R PPGP RG
Sbjct: 116 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRG 157
Score = 34.7 bits (78), Expect = 0.20
Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 277 EGGGTGLPS----KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 332
E G GLP + +RGP + G +G+ G + G GP G P D
Sbjct: 248 EPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVD------- 300
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
GR +P G + PPG PG +GV + +P +G
Sbjct: 301 -GRDGIP-GMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMG 358
Query: 393 ETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAES 430
+ Q + PPG G G G+R GP S
Sbjct: 359 NSGKPGQ------QGPPGEVGPRGPQGLPGSRGELGPVGS 392
Score = 32.3 bits (72), Expect = 1.00
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 33/192 (17%)
Query: 243 TAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQG 302
TAG+ L V + R PP P P T G G P P ++ G G
Sbjct: 125 TAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPG 184
Query: 303 SLGRASLSGPFG-PGPQGGPPSR-DRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
G G G PG QG D+ LG ++G PPGA+
Sbjct: 185 MRGHKGAKGEIGEPGRQGHKGEEGDQGELG-EVG----------------AQGPPGAQGL 227
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GA 415
G +G R G +G P P+ G Q R PPG G GA
Sbjct: 228 RGITGIVGDKGEKGAR-GLDG--EPGPQGLPGAPGDQGQ------RGPPGEAGPKGDRGA 278
Query: 416 MSAAGTRSPPGP 427
A G PGP
Sbjct: 279 EGARGIPGLPGP 290
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 55.5 bits (132), Expect = 1e-07
Identities = 68/227 (29%), Positives = 80/227 (35%), Gaps = 49/227 (21%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLT----EGGGTGLPSKQRRGPSPKTELGGPQGS 303
+G P +GAP PP P PGLT E G G P GP + G +G
Sbjct: 1001 SGEPGKQGAPGASGDRGPPGPVGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGD 1057
Query: 304 LGRASLSG-PFGPGPQGGP-------PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 355
G G P PGP G P DR G Q P+G + P AR P
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ-----GPMGPSGPAGARGIQGPQ 1112
Query: 356 GARDALSPDPERPCPGTRGVR-----------------SGREGLLSPA----PRSALGET 394
G R E PG RG++ SG +G PA PR G
Sbjct: 1113 GPRGDKGEAGE---PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV 1169
Query: 395 APTAQFTFRKVRNP---PGPRG--GAMSAAGTRSPPGPAESARSRGP 436
P+ + + P PGPRG G AG PGP GP
Sbjct: 1170 GPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGP 1216
Score = 50.4 bits (119), Expect = 4e-06
Identities = 57/201 (28%), Positives = 75/201 (37%), Gaps = 27/201 (13%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
GAP V P +PG G GLP + RG + G +G+ G+ +GP G
Sbjct: 303 GAPGVKGESGSPG-ENGSPGPM--GPRGLPGE--RGRTGPAGAAGARGNDGQPGPAGPPG 357
Query: 315 P-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTR 373
P GP GGP + G P G+ P A+ PG + P PGT
Sbjct: 358 PVGPAGGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 413
Query: 374 GV-----RSGREGLLS----------PAPRSALGETAPTAQFTFRKVRNPPGPRG--GAM 416
G+ +G G+ P P+ A G P Q + G +G G
Sbjct: 414 GIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 473
Query: 417 SAAGTRSPPGPAESARSRGPR 437
AG + PGPA RG R
Sbjct: 474 GPAGPQGAPGPAGEEGKRGAR 494
Score = 50.4 bits (119), Expect = 4e-06
Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 16/200 (8%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP----KTELGGPQGSL 304
G P RGAP P L P E G +GL + P + L G +G
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 305 GRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
GR +GP G GP G P R G P P P + P A + P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Query: 364 DPERPCPGTRGV--RSGREGLLSP----APRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
PG RG+ + G G P P GE F+ + PPGP G
Sbjct: 624 G----APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-G 678
Query: 418 AAGTRSPPGPAESARSRGPR 437
G + PG A + GPR
Sbjct: 679 KPGDQGVPGEAGAPGLVGPR 698
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/209 (32%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 249 GLPEVRGAPNVHRLPP---------PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG- 298
GLP GAP + LP PP P E G G PS + P P G
Sbjct: 621 GLP---GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG-PSGFQGLPGPPGPPGE 676
Query: 299 ----GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
G QG G A G GP + G P +R G Q ++ P G LP ++ P
Sbjct: 677 GGKPGDQGVPGEAGAPGLVGPRGERGFPG-ERGSPGAQ--GLQGPRG--LPGTPGTD-GP 730
Query: 355 PGARDALSPDPERPCPGTRGV--RSGREGLLSP-APRSALGETAPTA---QFTFRKVRNP 408
GA P + PG +G+ G G+ P R +GE P + R + P
Sbjct: 731 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 790
Query: 409 PGPRG--GAMSAAGTRSPPGPAESARSRG 435
GP G GA G PPGPA SA +RG
Sbjct: 791 IGPPGPAGANGEKGEVGPPGPAGSAGARG 819
Score = 48.5 bits (114), Expect = 1e-05
Identities = 62/199 (31%), Positives = 69/199 (34%), Gaps = 28/199 (14%)
Query: 249 GLPEVRGAPNVHRLPPPPSL--RTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GLP G P P + PGL G G P + RG L GP+G G
Sbjct: 666 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE--RGSPGAQGLQGPRGLPG 723
Query: 306 RASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD 364
GP G GP G P ++ L G R G A P R ++ G A D
Sbjct: 724 TPGTDGPKGASGPAGPPGAQGPPGLQGMPGE-RGAAGIAGPKGDRGDVGEKGPEGAPGKD 782
Query: 365 PERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTR 422
R G G P P A GE PPGP G GA A G R
Sbjct: 783 GGRGLTGPIG---------PPGPAGANGEKGEVG---------PPGPAGSAGARGAPGER 824
Query: 423 SPPGPAESARSRGPRPGWD 441
GP A GP PG D
Sbjct: 825 GETGPPGPAGFAGP-PGAD 842
Score = 48.1 bits (113), Expect = 2e-05
Identities = 56/209 (26%), Positives = 70/209 (33%), Gaps = 21/209 (10%)
Query: 249 GLPEVRG------APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQ 301
GLP RG A P P + GG G P +G + T GP+
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 302 GSLG-RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-LGSALPYPA-RSELAPPGAR 358
G+ G R P PGP G + + G P + A +P R P GA
Sbjct: 387 GAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGAT 446
Query: 359 DALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG----- 413
L P + PG G + + P P G P + R R PG G
Sbjct: 447 GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP 506
Query: 414 GAMSAAGTRSPP------GPAESARSRGP 436
G A G R P GP + RGP
Sbjct: 507 GERGAPGNRGFPGQDGLAGPKGAPGERGP 535
Score = 48.1 bits (113), Expect = 2e-05
Identities = 52/181 (28%), Positives = 66/181 (36%), Gaps = 39/181 (21%)
Query: 279 GGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQGGPPSRDRR 327
G G P ++ GP GP G+ G+ G G PGPQG PS
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--PSGAPG 873
Query: 328 HLGVQIGRVRVPLGSALPYPARSELAP------PGARDALSPDPERPCPGTRGV--RSGR 379
G P G P AR P PGA + P PG G SG+
Sbjct: 874 PQG--------PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 925
Query: 380 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSR 434
+G P+ A G++ P + ++ P GP G G +G PPGP A R
Sbjct: 926 DG-----PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980
Query: 435 G 435
G
Sbjct: 981 G 981
Score = 47.8 bits (112), Expect = 2e-05
Identities = 60/203 (29%), Positives = 69/203 (33%), Gaps = 35/203 (17%)
Query: 264 PPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--G 320
P P + PG G P R P G P G+ GR G G PGP G G
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGPPGSNGNPGPPGPPG 921
Query: 321 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 380
P +D P G+ PG + P E+ PG G SG E
Sbjct: 922 PSGKDG------------PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAE 968
Query: 381 GLLSPAPRSALGE---TAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESAR 432
G P P+ G+ Q R PGP G GA A+G R PPGP
Sbjct: 969 G--PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 433 SRGP--------RPGWDTPEKGD 447
GP PG D P D
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRD 1049
Score = 47.4 bits (111), Expect = 3e-05
Identities = 57/203 (28%), Positives = 70/203 (34%), Gaps = 17/203 (8%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQR-RGPSPKTELGGPQGSLGR 306
+G P G P + PP + G G P Q G L G +G G
Sbjct: 935 SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGF 994
Query: 307 ASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
L GP G PG QG P + R +G P G P PGA D
Sbjct: 995 PGLPGPSGEPGKQGAPGASGDRGPPGPVG----PPGLTGPAGEPGREGSPGADGPPGRDG 1050
Query: 366 ERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPP 425
G RG +P P + G PT + G RG A A G P
Sbjct: 1051 AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK---------QGDRGEA-GAQGPMGPS 1100
Query: 426 GPAESARSRGPR-PGWDTPEKGD 447
GPA + +GP+ P D E G+
Sbjct: 1101 GPAGARGIQGPQGPRGDKGEAGE 1123
Score = 45.8 bits (107), Expect = 9e-05
Identities = 63/213 (29%), Positives = 72/213 (33%), Gaps = 43/213 (20%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
TG P G R+ PP S P P G K RG S GP G G
Sbjct: 896 TGFPGAAG-----RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS------GPPGRAGEP 944
Query: 308 SLSGPFGP----------GPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 355
L GP GP GP G GPP + L Q G V +P R E P
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPG--PQGLAGQRGIVGLP-------GQRGERGFP 995
Query: 356 GARDALSPDPERPCPGTRGVRS-----GREGLLSPA----PRSALGETAPTAQFTFRKVR 406
G ++ PG G R G GL PA + G P + V+
Sbjct: 996 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVK 1055
Query: 407 NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
G G GA A G PGPA +G R
Sbjct: 1056 GDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1088
Score = 44.3 bits (103), Expect = 3e-04
Identities = 70/253 (27%), Positives = 78/253 (30%), Gaps = 68/253 (26%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGG------GTGLPSKQR-------RGPSPKT 295
G P G P P PP L GG G L Q RGP
Sbjct: 156 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 296 ELGGPQG------SLGRASLSGPFGPGPQGGPPSR--------------DRRHLGVQIGR 335
GPQG G +SGP GP GPP + +R G Q G
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ-GA 274
Query: 336 VRVPLGSALP-------YP----ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGL 382
P LP YP A+ E PG + E PG G R G G
Sbjct: 275 RGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 334
Query: 383 LSPA----PRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAES 430
PA R G+ P PPGP G GA A G P G
Sbjct: 335 TGPAGAAGARGNDGQPGPA---------GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 385
Query: 431 ARSRGPRPGWDTP 443
++GPR TP
Sbjct: 386 EGAQGPRGEPGTP 398
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/174 (27%), Positives = 58/174 (33%), Gaps = 51/174 (29%)
Query: 289 RGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR---------------DRRHLGVQI 333
RG + GP+G G G GP GPP D + G Q+
Sbjct: 137 RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 196
Query: 334 GRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGE 393
G ++ P+G P PPG A P + PG G G G + P
Sbjct: 197 GVMQGPMGPMGP------RGPPGPAGAPGPQGFQGNPGEPG-EPGVSGPMGP-------- 241
Query: 394 TAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPG 439
R PPGP G G AG R PPGP + AR PG
Sbjct: 242 ------------RGPPGPPGKPGDDGEAGKPGKAGERGPPGP-QGARGFPGTPG 282
Score = 36.6 bits (83), Expect = 0.053
Identities = 51/166 (30%), Positives = 56/166 (33%), Gaps = 57/166 (34%)
Query: 277 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 336
E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1123 EPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG------------- 1167
Query: 337 RVPLGSALPYPARSELAPPGARDALS--PDPERPCPGTRGVRSGREGLLSPAPRSALGET 394
P+G P +D + P P P PG RG RSG G P G
Sbjct: 1168 --PVG-------------PSGKDGANGIPGPIGP-PGPRG-RSGETG-----PAGPPGNP 1205
Query: 395 APTAQFTFRKVRNPPGPRGGA--MSAAGTRSPPGPAESARSRGPRP 438
P PPGP G MSA P R +GP P
Sbjct: 1206 GPP---------GPPGPPGPGIDMSAFAGLGP-------REKGPDP 1235
Score = 33.1 bits (74), Expect = 0.59
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 386 APRSALGETAPTAQFTFRKVRNPPGPRG------GAMSAAGTRSPPGPAESARSRGPRPG 439
+P GE P PGP+G G + PPGP A +GPR
Sbjct: 77 SPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPR-- 134
Query: 440 WDTPEKGD 447
D +KG+
Sbjct: 135 GDRGDKGE 142
Score = 32.3 bits (72), Expect = 1.00
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 338 VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPT 397
+P G P ++LA + P ++ PG G +G P P+ GE P
Sbjct: 80 IPFGECCPI-CPTDLATASGQPG--PKGQKGEPGDIKDIVGPKG--PPGPQGPAGEQGPR 134
Query: 398 AQFTFRKVRNPPGPRG--GAMSAAGTRSPPGP 427
+ + PGPRG G G PPGP
Sbjct: 135 GDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 166
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 55.5 bits (132), Expect = 1e-07
Identities = 68/227 (29%), Positives = 80/227 (35%), Gaps = 49/227 (21%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLT----EGGGTGLPSKQRRGPSPKTELGGPQGS 303
+G P +GAP PP P PGLT E G G P GP + G +G
Sbjct: 932 SGEPGKQGAPGASGDRGPPGPVGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGD 988
Query: 304 LGRASLSG-PFGPGPQGGP-------PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 355
G G P PGP G P DR G Q P+G + P AR P
Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ-----GPMGPSGPAGARGIQGPQ 1043
Query: 356 GARDALSPDPERPCPGTRGVR-----------------SGREGLLSPA----PRSALGET 394
G R E PG RG++ SG +G PA PR G
Sbjct: 1044 GPRGDKGEAGE---PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV 1100
Query: 395 APTAQFTFRKVRNP---PGPRG--GAMSAAGTRSPPGPAESARSRGP 436
P+ + + P PGPRG G AG PGP GP
Sbjct: 1101 GPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGP 1147
Score = 50.4 bits (119), Expect = 4e-06
Identities = 57/201 (28%), Positives = 75/201 (37%), Gaps = 27/201 (13%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
GAP V P +PG G GLP + RG + G +G+ G+ +GP G
Sbjct: 234 GAPGVKGESGSPG-ENGSPGPM--GPRGLPGE--RGRTGPAGAAGARGNDGQPGPAGPPG 288
Query: 315 P-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTR 373
P GP GGP + G P G+ P A+ PG + P PGT
Sbjct: 289 PVGPAGGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 374 GV-----RSGREGLLS----------PAPRSALGETAPTAQFTFRKVRNPPGPRG--GAM 416
G+ +G G+ P P+ A G P Q + G +G G
Sbjct: 345 GIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 404
Query: 417 SAAGTRSPPGPAESARSRGPR 437
AG + PGPA RG R
Sbjct: 405 GPAGPQGAPGPAGEEGKRGAR 425
Score = 50.4 bits (119), Expect = 4e-06
Identities = 57/200 (28%), Positives = 70/200 (35%), Gaps = 16/200 (8%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP----KTELGGPQGSL 304
G P RGAP P L P E G +GL + P + L G +G
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 305 GRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
GR +GP G GP G P R G P P P + P A + P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Query: 364 DPERPCPGTRGV--RSGREGLLSP----APRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
PG RG+ + G G P P GE F+ + PPGP G
Sbjct: 555 G----APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-G 609
Query: 418 AAGTRSPPGPAESARSRGPR 437
G + PG A + GPR
Sbjct: 610 KPGDQGVPGEAGAPGLVGPR 629
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/209 (32%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 249 GLPEVRGAPNVHRLPP---------PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG- 298
GLP GAP + LP PP P E G G PS + P P G
Sbjct: 552 GLP---GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG-PSGFQGLPGPPGPPGE 607
Query: 299 ----GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
G QG G A G GP + G P +R G Q ++ P G LP ++ P
Sbjct: 608 GGKPGDQGVPGEAGAPGLVGPRGERGFPG-ERGSPGAQ--GLQGPRG--LPGTPGTD-GP 661
Query: 355 PGARDALSPDPERPCPGTRGV--RSGREGLLSP-APRSALGETAPTA---QFTFRKVRNP 408
GA P + PG +G+ G G+ P R +GE P + R + P
Sbjct: 662 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 721
Query: 409 PGPRG--GAMSAAGTRSPPGPAESARSRG 435
GP G GA G PPGPA SA +RG
Sbjct: 722 IGPPGPAGANGEKGEVGPPGPAGSAGARG 750
Score = 48.5 bits (114), Expect = 1e-05
Identities = 62/199 (31%), Positives = 69/199 (34%), Gaps = 28/199 (14%)
Query: 249 GLPEVRGAPNVHRLPPPPSL--RTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GLP G P P + PGL G G P + RG L GP+G G
Sbjct: 597 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE--RGSPGAQGLQGPRGLPG 654
Query: 306 RASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPD 364
GP G GP G P ++ L G R G A P R ++ G A D
Sbjct: 655 TPGTDGPKGASGPAGPPGAQGPPGLQGMPGE-RGAAGIAGPKGDRGDVGEKGPEGAPGKD 713
Query: 365 PERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTR 422
R G G P P A GE PPGP G GA A G R
Sbjct: 714 GGRGLTGPIG---------PPGPAGANGEKGEVG---------PPGPAGSAGARGAPGER 755
Query: 423 SPPGPAESARSRGPRPGWD 441
GP A GP PG D
Sbjct: 756 GETGPPGPAGFAGP-PGAD 773
Score = 48.1 bits (113), Expect = 2e-05
Identities = 56/209 (26%), Positives = 70/209 (33%), Gaps = 21/209 (10%)
Query: 249 GLPEVRG------APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQ 301
GLP RG A P P + GG G P +G + T GP+
Sbjct: 258 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Query: 302 GSLG-RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP-LGSALPYPA-RSELAPPGAR 358
G+ G R P PGP G + + G P + A +P R P GA
Sbjct: 318 GAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGAT 377
Query: 359 DALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG----- 413
L P + PG G + + P P G P + R R PG G
Sbjct: 378 GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP 437
Query: 414 GAMSAAGTRSPP------GPAESARSRGP 436
G A G R P GP + RGP
Sbjct: 438 GERGAPGNRGFPGQDGLAGPKGAPGERGP 466
Score = 48.1 bits (113), Expect = 2e-05
Identities = 52/181 (28%), Positives = 66/181 (36%), Gaps = 39/181 (21%)
Query: 279 GGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQGGPPSRDRR 327
G G P ++ GP GP G+ G+ G G PGPQG PS
Sbjct: 747 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--PSGAPG 804
Query: 328 HLGVQIGRVRVPLGSALPYPARSELAP------PGARDALSPDPERPCPGTRGV--RSGR 379
G P G P AR P PGA + P PG G SG+
Sbjct: 805 PQG--------PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 856
Query: 380 EGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSR 434
+G P+ A G++ P + ++ P GP G G +G PPGP A R
Sbjct: 857 DG-----PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911
Query: 435 G 435
G
Sbjct: 912 G 912
Score = 47.8 bits (112), Expect = 2e-05
Identities = 60/203 (29%), Positives = 69/203 (33%), Gaps = 35/203 (17%)
Query: 264 PPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--G 320
P P + PG G P R P G P G+ GR G G PGP G G
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGPPGSNGNPGPPGPPG 852
Query: 321 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 380
P +D P G+ PG + P E+ PG G SG E
Sbjct: 853 PSGKDG------------PKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAE 899
Query: 381 GLLSPAPRSALGE---TAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESAR 432
G P P+ G+ Q R PGP G GA A+G R PPGP
Sbjct: 900 G--PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 433 SRGP--------RPGWDTPEKGD 447
GP PG D P D
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRD 980
Score = 47.4 bits (111), Expect = 3e-05
Identities = 57/203 (28%), Positives = 70/203 (34%), Gaps = 17/203 (8%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQR-RGPSPKTELGGPQGSLGR 306
+G P G P + PP + G G P Q G L G +G G
Sbjct: 866 SGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGF 925
Query: 307 ASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
L GP G PG QG P + R +G P G P PGA D
Sbjct: 926 PGLPGPSGEPGKQGAPGASGDRGPPGPVG----PPGLTGPAGEPGREGSPGADGPPGRDG 981
Query: 366 ERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPP 425
G RG +P P + G PT + G RG A A G P
Sbjct: 982 AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK---------QGDRGEA-GAQGPMGPS 1031
Query: 426 GPAESARSRGPR-PGWDTPEKGD 447
GPA + +GP+ P D E G+
Sbjct: 1032 GPAGARGIQGPQGPRGDKGEAGE 1054
Score = 45.8 bits (107), Expect = 9e-05
Identities = 63/213 (29%), Positives = 72/213 (33%), Gaps = 43/213 (20%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
TG P G R+ PP S P P G K RG S GP G G
Sbjct: 827 TGFPGAAG-----RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS------GPPGRAGEP 875
Query: 308 SLSGPFGP----------GPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPP 355
L GP GP GP G GPP + L Q G V +P R E P
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPG--PQGLAGQRGIVGLP-------GQRGERGFP 926
Query: 356 GARDALSPDPERPCPGTRGVRS-----GREGLLSPA----PRSALGETAPTAQFTFRKVR 406
G ++ PG G R G GL PA + G P + V+
Sbjct: 927 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVK 986
Query: 407 NPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
G G GA A G PGPA +G R
Sbjct: 987 GDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1019
Score = 44.3 bits (103), Expect = 3e-04
Identities = 70/253 (27%), Positives = 78/253 (30%), Gaps = 68/253 (26%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGG------GTGLPSKQR-------RGPSPKT 295
G P G P P PP L GG G L Q RGP
Sbjct: 87 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 146
Query: 296 ELGGPQG------SLGRASLSGPFGPGPQGGPPSR--------------DRRHLGVQIGR 335
GPQG G +SGP GP GPP + +R G Q G
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ-GA 205
Query: 336 VRVPLGSALP-------YP----ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGL 382
P LP YP A+ E PG + E PG G R G G
Sbjct: 206 RGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 265
Query: 383 LSPA----PRSALGETAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAES 430
PA R G+ P PPGP G GA A G P G
Sbjct: 266 TGPAGAAGARGNDGQPGPA---------GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 316
Query: 431 ARSRGPRPGWDTP 443
++GPR TP
Sbjct: 317 EGAQGPRGEPGTP 329
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/174 (27%), Positives = 58/174 (33%), Gaps = 51/174 (29%)
Query: 289 RGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR---------------DRRHLGVQI 333
RG + GP+G G G GP GPP D + G Q+
Sbjct: 68 RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 127
Query: 334 GRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGE 393
G ++ P+G P PPG A P + PG G G G + P
Sbjct: 128 GVMQGPMGPMGP------RGPPGPAGAPGPQGFQGNPGEPG-EPGVSGPMGP-------- 172
Query: 394 TAPTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRGPRPG 439
R PPGP G G AG R PPGP + AR PG
Sbjct: 173 ------------RGPPGPPGKPGDDGEAGKPGKAGERGPPGP-QGARGFPGTPG 213
Score = 36.6 bits (83), Expect = 0.053
Identities = 51/166 (30%), Positives = 56/166 (33%), Gaps = 57/166 (34%)
Query: 277 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 336
E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1054 EPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG------------- 1098
Query: 337 RVPLGSALPYPARSELAPPGARDALS--PDPERPCPGTRGVRSGREGLLSPAPRSALGET 394
P+G P +D + P P P PG RG RSG G P G
Sbjct: 1099 --PVG-------------PSGKDGANGIPGPIGP-PGPRG-RSGETG-----PAGPPGNP 1136
Query: 395 APTAQFTFRKVRNPPGPRGGA--MSAAGTRSPPGPAESARSRGPRP 438
P PPGP G MSA P R +GP P
Sbjct: 1137 GPP---------GPPGPPGPGIDMSAFAGLGP-------REKGPDP 1166
Score = 32.0 bits (71), Expect = 1.3
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 385 PAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGP 427
P P+ GE P + + PGPRG G G PPGP
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 97
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 55.5 bits (132), Expect = 1e-07
Identities = 59/223 (26%), Positives = 81/223 (36%), Gaps = 50/223 (22%)
Query: 235 SNPLPLTTTAGVVTGLPEVRGAPNVHRL---PPPPSLRTPTPGLTEGGGTGLPSKQRRGP 291
+ PLP LP +G P L P PP+ P+P GG PS +
Sbjct: 1049 ATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSP----KGGPATPSPKGAPM 1104
Query: 292 SPKTELGGPQGSL------GRASLSGPFGPGPQGG---PPSRDRRHLGVQIGRVRVPLGS 342
P P+G L G + P P+GG PP P G+
Sbjct: 1105 PPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP----------------PKGA 1148
Query: 343 ALPYPARSELAPPGARDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQF 400
P PP + L+ P + P T S + GL +P+P+ A T P A
Sbjct: 1149 ----PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGA--PTTPAA-- 1200
Query: 401 TFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
PP P+GG + + +P PA + S P+ G TP
Sbjct: 1201 ------TPPSPKGGLATPSPKGAPTTPAATPPS--PKGGLATP 1235
Score = 53.9 bits (128), Expect = 3e-07
Identities = 54/205 (26%), Positives = 77/205 (37%), Gaps = 44/205 (21%)
Query: 251 PEVRGAPNVHRLPP----PPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
P +G+P P PP+ P+P +G P + +P L P+G
Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSP---KGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073
Query: 307 ASLSGP------FGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDA 360
SL G P P+GGP + P G+ +P A PP +
Sbjct: 1074 PSLKGAPTPPAATPPSPKGGPATPS-------------PKGAPMPPAA----TPPSPKGG 1116
Query: 361 LSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSA 418
L+ P + P T S + GL +P P+ A T P A PP P+GG +
Sbjct: 1117 LATPPHKGAPTTPAATPPSPKGGLATPPPKGA--PTTPAA--------TPPSPKGGLATP 1166
Query: 419 AGTRSPPGPAESARSRGPRPGWDTP 443
+P PA + S P+ G TP
Sbjct: 1167 PPKGAPTTPAATPPS--PKGGLATP 1189
Score = 52.4 bits (124), Expect = 9e-07
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 16/185 (8%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS--KQRRGPSPKTELGGPQGSLGR 306
G P +GAP + PP TPT T G P+ + GP+P +G
Sbjct: 1325 GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAM 1384
Query: 307 ASLS---GPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
S GP P P+G P S L + P++ +L PP A++P
Sbjct: 1385 TPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPP----AVTP 1440
Query: 364 DPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRS 423
+ P T + G PA S+ G+ A T + PP P+ A S++ ++
Sbjct: 1441 VSLKKAPATSAPKGG------PATPSSKGDPTLPA-VTPPSPKEPPAPKQVATSSSPKKA 1493
Query: 424 PPGPA 428
P PA
Sbjct: 1494 PATPA 1498
Score = 47.4 bits (111), Expect = 3e-05
Identities = 57/212 (26%), Positives = 73/212 (34%), Gaps = 21/212 (9%)
Query: 239 PLTTTAGVVTGLPEVRGAPNVHRLPPPP---SLRTPTPGLTEGGGTGLPSKQRRG---PS 292
P + G+ T P +GAP PP L TP+P P + G PS
Sbjct: 1179 PPSPKGGLAT--PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS 1236
Query: 293 PKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSEL 352
PK P + + GP P P+G P ++ G + P P PA
Sbjct: 1237 PKGAPTTPAAT-PPSPKGGPATPPPKGAPTPPAATPPSLK-GGLATPPHKGAPNPAVVTP 1294
Query: 353 APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPR 412
P A SP P P S + +P P+ A A T PP P+
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT----------PPSPK 1344
Query: 413 GGAMSAAGTRSPPG-PAESARSRGPRPGWDTP 443
G A T S G P + GP P TP
Sbjct: 1345 GTPTLPATTPSSKGGPTTPSSKEGPTPPAATP 1376
Score = 44.7 bits (104), Expect = 2e-04
Identities = 58/220 (26%), Positives = 76/220 (34%), Gaps = 36/220 (16%)
Query: 239 PLTTTAGVVTGLPEVRGAPNVHRLPPPP---SLRTP-------TPGLTEG---GGTGLPS 285
P + G+ T P +GAP PP L TP TP T GG PS
Sbjct: 1133 PPSPKGGLAT--PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 286 KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 345
+ +P P+G L S G P PPS G + P P
Sbjct: 1191 PKGAPTTPAATPPSPKGGLATPSPKGA-PTTPAATPPSPK--------GGLATPSPKGAP 1241
Query: 346 Y-PARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRK 404
PA + +P G A P P P S + GL +P + A T
Sbjct: 1242 TTPAATPPSPKGG-PATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT------- 1293
Query: 405 VRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPE 444
PP P+GG ++ +P PA + S PG P+
Sbjct: 1294 ---PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPK 1330
Score = 43.5 bits (101), Expect = 4e-04
Identities = 59/237 (24%), Positives = 80/237 (33%), Gaps = 39/237 (16%)
Query: 235 SNPLPLTTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSK-------- 286
S P P AG G +V G + L P S P G SK
Sbjct: 733 SVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLAD 792
Query: 287 -----------QRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGR 335
Q + P K GP +G +LS P P P G +
Sbjct: 793 SPSPLGVSVSPQTKRPPTKKGSAGPDTPIG--NLSSPVSPVEASFLPENSLSFQGSKDS- 849
Query: 336 VRVPLGSALPYPARSELAP-PGARDALSPD------PERPCPGTRGVRSGREGLLSPAPR 388
P + P P + AP P A LSP E P P + +EG +PAP+
Sbjct: 850 ---PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPK 906
Query: 389 SALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPG---PAESARSRGPRPGW 440
A + ++ + +K R P P+G + S G +PP P+ P P W
Sbjct: 907 QAPALSMTSS--SPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKW 961
Score = 42.7 bits (99), Expect = 7e-04
Identities = 60/225 (26%), Positives = 86/225 (38%), Gaps = 46/225 (20%)
Query: 227 PDDHLHALSNPLPLTTTAGVVTGLPEVRGA---PNVHRLPPPPSLR-TPTPGLT---EGG 279
PD + LS+P+ + + +G+ P P PPS + PTP
Sbjct: 817 PDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPK 876
Query: 280 GTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVP 339
G LP K+ PS L P+ GP P P+ P +
Sbjct: 877 GVTLPPKETPTPSV-VNLPFPK--------EGPATPAPKQAPA---------------LS 912
Query: 340 LGSALPYPARSELAPPGARDALSPDPE-RPCPGTRGVRSGREGLLSPAPRSALGETAPTA 398
+ S+ P AR+ AP G SP P+ P P S + G +P+P+ A T P A
Sbjct: 913 MTSSSPKKARATPAPKGI--PASPSPKGAPTPPAATPPSPKGGPATPSPKWA--PTPPAA 968
Query: 399 QFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTP 443
PP P+GG + + +P PA + S P+ G TP
Sbjct: 969 --------TPPSPKGGPATPSPKGAPTPPAATPPS--PKGGPATP 1003
Score = 42.7 bits (99), Expect = 7e-04
Identities = 55/211 (26%), Positives = 76/211 (36%), Gaps = 50/211 (23%)
Query: 253 VRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELGGPQGSLG 305
+ +P+ P PP+ P+P GG PS + PSPK GGP
Sbjct: 930 IPASPSPKGAPTPPAATPPSPK----GGPATPSPKWAPTPPAATPPSPK---GGPATPSP 982
Query: 306 RASLSGPFG--PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSP 363
+ + + P P P+GGP + + P P P S A P + A +P
Sbjct: 983 KGAPTPPAATPPSPKGGPATPSPKG-------APTPPAVTPPSPKGSPAATPFPKGASTP 1035
Query: 364 DPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGG--AMSAAGT 421
P P +G + +P P+ A T P A P P+GG S G
Sbjct: 1036 PAATP-PSPKGSPAA-----TPLPKGA--PTTPAATL--------PSPKGGPATPSLKGA 1079
Query: 422 RSPP---------GPAESARSRGPRPGWDTP 443
+PP GPA + P P TP
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATP 1110
Score = 42.4 bits (98), Expect = 0.001
Identities = 56/229 (24%), Positives = 80/229 (34%), Gaps = 43/229 (18%)
Query: 234 LSNPLPLTTTAGVVTGLPEVRGAPNVHRLPPPPSLRTP---TPGLTEGGGTGLPSKQRRG 290
L+ P P P +G P PPP TP TP +GG P K
Sbjct: 1232 LATPSPKGAPTTPAATPPSPKGGPAT---PPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288
Query: 291 PS---PKTELGGPQGSLGRASLSGPFG--PGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 345
P+ P + GGP S + + + P P P+G P + P G+ P
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPP-------------PKGAPTP 1335
Query: 346 YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKV 405
PA + +P G +P P ++G G +P+ + A T
Sbjct: 1336 -PAVTPPSPKG-----TPTLPATTPSSKG------GPTTPSSKEGPTPPAATPSHKGGPA 1383
Query: 406 RNPPGPRGGAMSAAGTRSPPGPA-------ESARSRGPRPGWDTPEKGD 447
PP P+ G + P PA ++ + R G TP KGD
Sbjct: 1384 MTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGD 1432
Score = 42.4 bits (98), Expect = 0.001
Identities = 52/208 (25%), Positives = 71/208 (34%), Gaps = 48/208 (23%)
Query: 250 LPEVRGAPNVHRLP--PPPSLRTPTPGLTEGGGTGL--PSKQRRGPSPKTELGGPQGSLG 305
+P P+ + P P P TP E PS + PSPK EL P
Sbjct: 1549 IPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPK-ELLIPPAVTS 1607
Query: 306 RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDP 365
+ P P PPS ++ G A P P + +PP +L P
Sbjct: 1608 PSPKEAPTPPAVT--PPSPEK--------------GPATPAPKGTPTSPPVTPSSLKDSP 1651
Query: 366 ERPC-----------------PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNP 408
P P +G + +E L++PAP S TAPT +
Sbjct: 1652 TSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRK--------- 1702
Query: 409 PGPRGGAMSAAGTRSPPGPAESARSRGP 436
GP+ SA P P+ S+GP
Sbjct: 1703 -GPQTKKSSATSPPICPDPSAKNGSKGP 1729
Score = 39.7 bits (91), Expect = 0.006
Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 50/206 (24%)
Query: 270 TPTP-GLTEGGGTGLPSKQRRGPSPKTELGG-------------PQGSLG-------RAS 308
+P+P G++ T P ++ P T +G P+ SL A+
Sbjct: 793 SPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPAT 852
Query: 309 LSGPFGPGPQGGPPSRDRRHL---GVQIGRVRVPLGSA--LPYPARSELAP-PGARDALS 362
P P P+G P L GV + P S LP+P P P ALS
Sbjct: 853 THSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALS 912
Query: 363 -----PDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMS 417
P R P +G+ + SP+P+ A T P A PP P+GG +
Sbjct: 913 MTSSSPKKARATPAPKGIPA------SPSPKGA--PTPPAA--------TPPSPKGGPAT 956
Query: 418 AAGTRSPPGPAESARSRGPRPGWDTP 443
+ +P PA + S P+ G TP
Sbjct: 957 PSPKWAPTPPAATPPS--PKGGPATP 980
Score = 38.1 bits (87), Expect = 0.018
Identities = 53/210 (25%), Positives = 75/210 (35%), Gaps = 51/210 (24%)
Query: 251 PEVRGAPNVHRLPPP-------PSLRTPTPGLT------EGGGTGLPSKQRRGPSPKTEL 297
P +GAP + P P TPTP + EG T P + +P +
Sbjct: 859 PSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQ-----APALSM 913
Query: 298 GGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGA 357
RA+ P P+G P S P G+ P PA + +P G
Sbjct: 914 TSSSPKKARAT------PAPKGIPASPS-------------PKGAPTP-PAATPPSPKGG 953
Query: 358 RDALSPDPE-RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAM 416
+P P+ P P S + G +P+P+ A T P A PP P+GG
Sbjct: 954 --PATPSPKWAPTPPAATPPSPKGGPATPSPKGA--PTPPAA--------TPPSPKGGPA 1001
Query: 417 SAAGTRSPPGPAESARSRGPRPGWDTPEKG 446
+ + +P PA + S P KG
Sbjct: 1002 TPSPKGAPTPPAVTPPSPKGSPAATPFPKG 1031
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 55.1 bits (131), Expect = 1e-07
Identities = 64/223 (28%), Positives = 79/223 (35%), Gaps = 49/223 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G+P G P PP R P PG+ G P RGP GP G G
Sbjct: 1033 GMPGGMGTPGEPGPQGPPGSRGP-PGMRGAKGRRGP----RGPD------GPAGEQGSRG 1081
Query: 309 LSGPFGPGPQGGP-------PSRDRRHLGVQIGRVRVP-----------LGSALPYPARS 350
L GP PGPQG P + +R HLG + G +P G P +
Sbjct: 1082 LKGP--PGPQGRPGRPGQQGVAGERGHLGSR-GFPGIPGPSGPPGTKGLPGEPGPQGPQG 1138
Query: 351 ELAPPGARDALSPD---PERPCPGTRGVRS--------GREGLLSPAPRSAL-GETAPTA 398
+ PPG P E PG G++ G +GL+ L G++ P
Sbjct: 1139 PIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMG 1198
Query: 399 QFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGP 436
+ R PGP G G G PPGP RGP
Sbjct: 1199 PDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGP 1241
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/230 (29%), Positives = 89/230 (38%), Gaps = 30/230 (13%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGGPQGSLGRA 307
GL V+G P P P + + G G+ K RG + GP+GS+G
Sbjct: 973 GLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHP 1032
Query: 308 SLSGPFG----PGPQGGPPSRDRRHLGVQIGR--VRVPLGSALPYPARSELAPPGARDAL 361
+ G G PGPQG P SR + GR R P G A +R PPG
Sbjct: 1033 GMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPG----- 1087
Query: 362 SPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAA 419
P PG +GV +G G L R G P+ + + PGP+G G +
Sbjct: 1088 -PQGRPGRPGQQGV-AGERGHL--GSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPP 1143
Query: 420 GTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTMQEDVGPLSFSSEYSM 469
G P GP + G PG E G M+ D+GPL E +
Sbjct: 1144 GEMGPKGPPGAVGEPG-LPG----EAG-------MKGDLGPLGTPGEQGL 1181
Score = 46.2 bits (108), Expect = 7e-05
Identities = 61/228 (26%), Positives = 80/228 (35%), Gaps = 43/228 (18%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRT-PTPGLTEG--------GGTGLPSKQRRGPSPKTELGG 299
G+ +RG P P P R P P ++G G G P RRG L G
Sbjct: 1370 GVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPG--RRGVQGLQGLPG 1427
Query: 300 PQGSLGRASLSGPFGP----------GPQG--------GP--PSRDRRHLGVQ-IGRVRV 338
P+G +GR L G GP G QG GP P+ R + GV + +
Sbjct: 1428 PRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQG 1487
Query: 339 PLGSALPYPARSELAPPGARDA---LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETA 395
P G +L PPG R + PG++G + P G
Sbjct: 1488 PPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKG 1547
Query: 396 PTAQFTFRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARSRG 435
P F+ ++ P GP G G + G PGP SRG
Sbjct: 1548 PPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRG 1595
Score = 43.9 bits (102), Expect = 3e-04
Identities = 62/229 (27%), Positives = 80/229 (34%), Gaps = 50/229 (21%)
Query: 249 GLPEVRGAPN-VHRLPPPPSLRTPTPGLTEG--GGTGLPSKQ----RRGPSPKTELGGPQ 301
G P RG P + ++ S+ P P EG G G P +G L GP+
Sbjct: 880 GFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPR 939
Query: 302 GSLGRASLSGPFG----PGPQGGP-------------------------PSRDRRHLGVQ 332
G LG GP G PG +G P P ++ +G
Sbjct: 940 GQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGF- 998
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 392
IG V P G R + PPG P P + G G+ G P P+ G
Sbjct: 999 IGLVGEP-GIVGEKGDRGMMGPPGV-----PGP-KGSMGHPGMPGGMGTPGEPGPQGPPG 1051
Query: 393 ETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPG 439
P + R P GP G G + G + PPGP + R RPG
Sbjct: 1052 SRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGP----QGRPGRPG 1096
Score = 43.5 bits (101), Expect = 4e-04
Identities = 68/245 (27%), Positives = 89/245 (36%), Gaps = 60/245 (24%)
Query: 249 GLPEVRGAPNVHRLPPPPSL--RTPTPGLTEGGGTGLPSKQ----RRGPSPKTELGGPQG 302
G P RG + LP P + R G+ G GLP + ++G GP G
Sbjct: 1412 GAPGRRGVQGLQGLPGPRGVVGRQGLEGIA--GPDGLPGRDGQAGQQGEQGDDGDPGPMG 1469
Query: 303 SLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIG---------RVRVPLGSALP----YPA 348
G+ G G PG QG P + L Q+G R +P P P
Sbjct: 1470 PAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPG 1529
Query: 349 RS-ELAPPGARDALSPDPERPCPGTRGVRS--------GREGLLSPAPRSALGETAPTAQ 399
S E+ PG P G +G++ G+EG++ P LG P+
Sbjct: 1530 DSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGP-----LGILGPSGL 1584
Query: 400 FTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLSFTM 454
PGP+G G G R PPGP RG RPG P G L
Sbjct: 1585 ---------PGPKGDKGSRGDWGLQGPRGPPGP------RG-RPGPPGPPGGPIQL---Q 1625
Query: 455 QEDVG 459
Q+D+G
Sbjct: 1626 QDDLG 1630
Score = 43.1 bits (100), Expect = 6e-04
Identities = 53/183 (28%), Positives = 68/183 (37%), Gaps = 38/183 (20%)
Query: 273 PGLTEGGGTGLPS--KQRRG-PSPKTELG-----------GPQGSLGRASLSGPFGP--- 315
PGL G P K RG P P E G GP G G + GP G
Sbjct: 1188 PGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGK 1247
Query: 316 -GPQGGPPSRDRRHLGVQIGRVRVP-----LGSALPYPARSELAPPGARDALSPDPERPC 369
G +G ++ + Q+G + VP G+ P +R L P GA + E
Sbjct: 1248 QGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGE--- 1304
Query: 370 PGTRGVRSGREGLLS----PAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRS 423
PG G G +G++ P P+ GE K PPGP G G + G R
Sbjct: 1305 PGLAGY-DGHKGIVGPLGPPGPKGEKGEQGEDG-----KAEGPPGPPGDRGPVGDRGDRG 1358
Query: 424 PPG 426
PG
Sbjct: 1359 EPG 1361
Score = 40.0 bits (92), Expect = 0.005
Identities = 59/188 (31%), Positives = 71/188 (37%), Gaps = 43/188 (22%)
Query: 262 LPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 321
LP PP L PGL G+P RGP GP G G L GP G Q G
Sbjct: 635 LPGPPGL----PGLP-----GIPGA--RGPR------GPPGPYGNPGLPGPPGAKGQKGD 677
Query: 322 P--SRDRRHLGVQIGRVRVPLGSALPYP--ARSELAPPGAR----DALSPDPERPCPGTR 373
P S + H G + G + +P S P P + PG + P PE PG +
Sbjct: 678 PGLSPGKAHDGAK-GDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPE-GSPGAK 735
Query: 374 GVRSGREGLL----SPAPRSALGETAPTAQFTF------RKVRNPPGPRG-----GAMSA 418
G GR+GL P P+ + G F R + PG RG G
Sbjct: 736 GY-PGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGV 794
Query: 419 AGTRSPPG 426
G R PPG
Sbjct: 795 FGERGPPG 802
Score = 39.3 bits (90), Expect = 0.008
Identities = 50/175 (28%), Positives = 64/175 (36%), Gaps = 33/175 (18%)
Query: 263 PPPPSLRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGG 320
P PP TP P + G G TG P R G + L G G G GP GP + G
Sbjct: 1275 PGPPG--TPGPKGSRGSLGPTGAPG--RMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKG 1330
Query: 321 PPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGRE 380
D G+ P G PPG R + +R PG G G+E
Sbjct: 1331 EQGED--------GKAEGPPG------------PPGDRGPVGDRGDRGEPGDPGY-PGQE 1369
Query: 381 GLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRG 435
G+ + G+ Q R PGP+ G+ A G + G A + RG
Sbjct: 1370 GV-----QGLRGKPGQQGQPGHPGPRGWPGPK-GSKGAEGPKGKQGKAGAPGRRG 1418
Score = 38.9 bits (89), Expect = 0.011
Identities = 56/208 (26%), Positives = 74/208 (35%), Gaps = 38/208 (18%)
Query: 263 PPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG--PGPQGG 320
P P S R+ P T T S R P+ T P GS P G + G
Sbjct: 493 PTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGS------KKPIGSEASKKAG 546
Query: 321 PPSRDRRHLGVQIGRVR--VPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSG 378
P S R+ + ++ G+ VPL P+ + P P + +
Sbjct: 547 PKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQ-----------PQPSQQTTPALVLAPA 595
Query: 379 REGLLSPAPRSALGETAPTAQFT-FRKVRNPPGPRG--------------GAMSAAGTRS 423
+ SP P S+ A T F + PPGP+G G A G R
Sbjct: 596 QFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRG 655
Query: 424 PPGPAESARSRGPRPGWDTPEKGDHLLS 451
PPGP + GP PG +KGD LS
Sbjct: 656 PPGPYGNPGLPGP-PG-AKGQKGDPGLS 681
Score = 38.5 bits (88), Expect = 0.014
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 32/180 (17%)
Query: 263 PPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG-PFGPGPQGGP 321
P PP R P + G G P P E G QG G+ G P PGP+G P
Sbjct: 1342 PGPPGDRGPVGDRGDRGEPGDPGY------PGQE--GVQGLRGKPGQQGQPGHPGPRGWP 1393
Query: 322 PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREG 381
+ + G+ P + + PG R + PG RGV GR+G
Sbjct: 1394 GPKGSK-------------GAEGPKGKQGKAGAPGRRGVQGL---QGLPGPRGV-VGRQG 1436
Query: 382 LLSPA-PRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGW 440
L A P G Q + PGP G AG R PG A ++GP PG+
Sbjct: 1437 LEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMG----PAGKRGNPGVAGLPGAQGP-PGF 1491
Score = 32.7 bits (73), Expect = 0.76
Identities = 44/154 (28%), Positives = 54/154 (35%), Gaps = 31/154 (20%)
Query: 290 GPSPKTELGGPQGSLGRASLSGPFG----PGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 345
GP L GP G G + G G PGP G P Q G + G A
Sbjct: 628 GPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHD 687
Query: 346 YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKV 405
A+ ++ PG LS +P P R G +G P P GE
Sbjct: 688 -GAKGDMGLPG----LSGNPGPP------GRKGHKGY--PGPAGHPGE------------ 722
Query: 406 RNPPGPRG--GAMSAAGTRSPPGPAESARSRGPR 437
+ PGP G GA G + PGP +G R
Sbjct: 723 QGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSR 756
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 55.1 bits (131), Expect = 1e-07
Identities = 64/231 (27%), Positives = 80/231 (34%), Gaps = 33/231 (14%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELGGPQ 301
G+P +G P + P P + P + G G P ++ + GP + GPQ
Sbjct: 863 GIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQ 922
Query: 302 GS------LGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
G LG GP GP G QG P R ++G PLG P R P
Sbjct: 923 GKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPG-PLGKEGPAGLRGFPGP 981
Query: 355 PGARDALSPD-------PERPC-----PGTRGVRSGREGLLSPAPRSALGETAPTAQFTF 402
G P P P PG RG G+ P + G P +
Sbjct: 982 KGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGS 1041
Query: 403 RKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGPRPGWDTP----EKGD 447
R R PPGP G G G PPG A + G + P KGD
Sbjct: 1042 RGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGD 1092
Score = 52.4 bits (124), Expect = 9e-07
Identities = 68/217 (31%), Positives = 76/217 (35%), Gaps = 58/217 (26%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS----KQRRG----PSPKTELG--GPQGSL 304
GAP R P P+ TPGL GG G P K RG P P G GP+G +
Sbjct: 1172 GAPGP-RGPQGPTGSEGTPGLP--GGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDI 1228
Query: 305 GRASLSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDAL 361
G SGP G GP G GPP D GS P +L PPG
Sbjct: 1229 GEKGDSGPSGAAGPPGKKGPPGEDGAK------------GSVGPTGLPGDLGPPGDPGVS 1276
Query: 362 SPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-------- 413
D G+ G + + P P A GE PPG RG
Sbjct: 1277 GID------GSPGEKGDPGDVGGPGPPGASGEPG---------APGPPGKRGPSGHMGRE 1321
Query: 414 ------GAMSAAGTRSPPGPAESARSRGPRPGWDTPE 444
GA G PPG +RGP PG PE
Sbjct: 1322 GREGEKGAKGEPGPDGPPGRTGPMGARGP-PGRVGPE 1357
Score = 49.7 bits (117), Expect = 6e-06
Identities = 62/217 (28%), Positives = 83/217 (38%), Gaps = 34/217 (15%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
+ G P +G P P PP E G G P K RGPS G +G G
Sbjct: 1278 IDGSPGEKGDPGDVGGPGPPGASG------EPGAPGPPGK--RGPSGHMGREGREGEKGA 1329
Query: 307 ASLSGPFGPG----PQG--GPPSRDRRHLGVQ-IGRVRVPLGSALPYPARSELAPPGARD 359
GP GP P G GPP R +G + + + P+G A ++ PPG
Sbjct: 1330 KGEPGPDGPPGRTGPMGARGPPGR----VGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLG 1385
Query: 360 ALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG---- 413
+ G +G + G GL+ P GE V+ PPGP+G
Sbjct: 1386 PSGLPGLKGDTGPKGEKGHIGLIGLIGPP-----GEAGEKGDQGLPGVQGPPGPKGDPGP 1440
Query: 414 -GAMSAAGTRSPPGPAESARSRGPR--PGWDTPEKGD 447
G + + G PPG A +G + PG P +GD
Sbjct: 1441 PGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGP-RGD 1476
Score = 46.6 bits (109), Expect = 5e-05
Identities = 54/171 (31%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 279 GGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 337
G GLP K +RG GP G G GP GP Q G P R LG
Sbjct: 554 GLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPG-PRGLLG------- 605
Query: 338 VPLGSALP--YPARSEL-APPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL--- 391
P GS P P + + PGA+ + P E PG +G G +GL P P+ +
Sbjct: 606 -PRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQG-NHGSQGL--PGPQGLIGTP 661
Query: 392 GETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGPAESARSRGPR 437
GE P + GP G G G + PPG A GPR
Sbjct: 662 GEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPR 712
Score = 42.4 bits (98), Expect = 0.001
Identities = 66/231 (28%), Positives = 79/231 (34%), Gaps = 39/231 (16%)
Query: 237 PLPLTTTAGVV--TGLPEVRGAPNVHRLPPPPSLRTP--TPGLT-------EGGGTGLPS 285
P+ LT G V G P ++G P L+ P PG G GLP
Sbjct: 483 PVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPG 542
Query: 286 KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 345
GP G G G G FG Q GPP D G+ P
Sbjct: 543 DT--GPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGER------------GAEGP 588
Query: 346 YPARSELAPPGARDALSPDPERPCPGTRGVRSGREGL-LSPAPRSAL---GETAPTAQFT 401
+ PG R L P R PG G R G G+ +P + + GE P Q
Sbjct: 589 PGPTGQAGEPGPRGLLGP---RGSPGPTG-RPGVTGIDGAPGAKGNVGPPGEPGPPGQQG 644
Query: 402 FRKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPGWDTP--EKG 446
+ PGP+G G G PG S GP PG + P EKG
Sbjct: 645 NHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKG 695
Score = 39.3 bits (90), Expect = 0.008
Identities = 50/161 (31%), Positives = 56/161 (34%), Gaps = 35/161 (21%)
Query: 281 TGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--------GPPSRDRRHLGV 331
T L K GP T GP G G L G G GPQG GPP R +G
Sbjct: 473 TQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGR----VG- 527
Query: 332 QIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL 391
++GR LP + P G R D PG +G R + P P
Sbjct: 528 KMGRPGADGARGLP----GDTGPKGDRGF---DGLPGLPGEKGQRGDFGHVGQPGPPGED 580
Query: 392 GETAPTAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGP 427
GE R PPGP G G G R PGP
Sbjct: 581 GE---------RGAEGPPGPTGQAGEPGPRGLLGPRGSPGP 612
Score = 38.9 bits (89), Expect = 0.011
Identities = 54/203 (26%), Positives = 72/203 (35%), Gaps = 57/203 (28%)
Query: 279 GGTGLPSKQRR--GPSPKTELG--GPQGSLGRASLSGPFG-------------------P 315
G GL Q + P P+ E G GP+G G+A GP G P
Sbjct: 740 GDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRP 799
Query: 316 GPQG-----GP--PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
GP+G GP P ++ G + G+ + G P +R E PGA P +
Sbjct: 800 GPKGSIGFPGPLGPIGEKGKSG-KTGQPGLE-GERGPPGSRGERGQPGATGQPGPKGDVG 857
Query: 369 CPGTRGVRSGREGLLS-------PAPR---------SALGETAPTAQFTFRKVRNPPGPR 412
G G+ G +GL P P+ G + F+ PPGP
Sbjct: 858 QDGAPGI-PGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPA 916
Query: 413 G--------GAMSAAGTRSPPGP 427
G G + G R PPGP
Sbjct: 917 GVLGPQGKTGEVGPLGERGPPGP 939
Score = 38.1 bits (87), Expect = 0.018
Identities = 53/180 (29%), Positives = 62/180 (34%), Gaps = 56/180 (31%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P + GAP PP P + PGL G TG K +G L GP G G
Sbjct: 1367 GEPGLLGAPG-QMGPPGPLGPSGLPGLK--GDTG--PKGEKGHIGLIGLIGPPGEAGEKG 1421
Query: 309 LSGPFG----PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
G G PGP+G GPP P+GS L +P PPG L
Sbjct: 1422 DQGLPGVQGPPGPKGDPGPPG---------------PIGS-LGHPG-----PPGVAGPLG 1460
Query: 363 PDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTR 422
+ PG+ G R G+T P PPGP G G R
Sbjct: 1461 QKGSKGSPGSMGPR---------------GDTGPA---------GPPGPPGAPAELHGLR 1496
Score = 37.0 bits (84), Expect = 0.041
Identities = 54/203 (26%), Positives = 67/203 (33%), Gaps = 40/203 (19%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
GLP G P + + PP P GG +GP + Q L +
Sbjct: 425 GLP---GIPGIDGIRGPPGTVIMMPFQFAGGSF-------KGPPVSFQQAQAQAVLQQTQ 474
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
LS PGP G L + G V +P L +E P G R P
Sbjct: 475 LSMKGPPGPVG---------LTGRPGPVGLPGHPGLKGEEGAE-GPQGPRGLQGPHGP-- 522
Query: 369 CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--------------G 414
PG G + GR G + R G+T P F + PG +G G
Sbjct: 523 -PGRVG-KMGRPG--ADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPG 578
Query: 415 AMSAAGTRSPPGPAESARSRGPR 437
G PPGP A GPR
Sbjct: 579 EDGERGAEGPPGPTGQAGEPGPR 601
Score = 36.6 bits (83), Expect = 0.053
Identities = 65/216 (30%), Positives = 83/216 (38%), Gaps = 43/216 (19%)
Query: 261 RLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPS----PKTELGGP--QGSLGRASLSGPFG 314
R PP P+ + PG G G P GPS K ++G P +GS G +GP G
Sbjct: 1045 RGPPGPTGKDGIPGPL--GPLGPPGAA--GPSGEEGDKGDVGAPGHKGSKGDKGDAGPPG 1100
Query: 315 P----GPQG--GPPSRD----RRHLGVQIGR-----VRVPLGSALPYPARSELAPPGAR- 358
GP G GPP D RR G+ VR +G P + PPG +
Sbjct: 1101 QPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKG 1160
Query: 359 ---DALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
D S P PG RG + +G EG +P +G+ + R PGP G
Sbjct: 1161 EVGDVGSMGP-HGAPGPRGPQGPTGSEG--TPGLPGGVGQPGAVGEKGERGDAGDPGPPG 1217
Query: 414 --------GAMSAAGTRSPPGPAESARSRGPRPGWD 441
G + G P G A +GP PG D
Sbjct: 1218 APGIPGPKGDIGEKGDSGPSGAAGPPGKKGP-PGED 1252
Score = 33.9 bits (76), Expect = 0.34
Identities = 52/197 (26%), Positives = 72/197 (36%), Gaps = 34/197 (17%)
Query: 235 SNPLPLTTTAGVVTGLPEVRG-APNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 293
S+P P + T +P+ APN LPP P+ T +T G + + P
Sbjct: 273 SSPPPDSAENQTSTDIPKTETPAPN---LPPTPTPLVVTSTVTTGLNATILERSL-DPDS 328
Query: 294 KTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELA 353
TELG + R G GP R A YP+R++
Sbjct: 329 GTELGTLETKAAREDEEGD---DSTMGPDFR------------------AAEYPSRTQFQ 367
Query: 354 P-PGARDALSPDPERPCPGTRGVR-SGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGP 411
PGA + + P +G + G G +P P+ +G + P F PPGP
Sbjct: 368 IFPGAGEKGAKG--EPAVIEKGQQFEGPPG--APGPQGVVGPSGPPGPPGFPGDPGPPGP 423
Query: 412 RG--GAMSAAGTRSPPG 426
G G G R PPG
Sbjct: 424 AGLPGIPGIDGIRGPPG 440
Score = 33.1 bits (74), Expect = 0.59
Identities = 56/196 (28%), Positives = 68/196 (34%), Gaps = 43/196 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSL-----RTPTPGLT-EGGGTGLPSKQRR-GPSPKTELGGPQ 301
G P +RG P H P PP R PGL + G G+ GP L GP
Sbjct: 1100 GQPGIRG-PAGH--PGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPP 1156
Query: 302 GSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGAR-DA 360
G G G GP G P R + G +P G P + G R DA
Sbjct: 1157 GEKGEVGDVGSM--GPHGAPGPRGPQGPTGSEGTPGLPGGVGQP----GAVGEKGERGDA 1210
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
P P PG G+ P P+ +GE + GP GA G
Sbjct: 1211 GDPGP----PGAPGI---------PGPKGDIGE------------KGDSGP-SGAAGPPG 1244
Query: 421 TRSPPGPAESARSRGP 436
+ PPG + S GP
Sbjct: 1245 KKGPPGEDGAKGSVGP 1260
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/218 (27%), Positives = 73/218 (33%), Gaps = 20/218 (9%)
Query: 239 PLTTTAGVVTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELG 298
P G GLP +G P PP R P G GLP +G
Sbjct: 1352 PGQVIGGEGPGLPGRKGDPGPSG---PPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER 1408
Query: 299 GPQG------SLGRASLSG-PFGPGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPAR 349
GP G + G L G P PGPQG GPP + + G +P P
Sbjct: 1409 GPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSP---- 1464
Query: 350 SELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPP 409
E P G A+ P +R PG G + P P + G + + PP
Sbjct: 1465 GEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPP 1524
Query: 410 GPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
GP G G + PG GP EKGD
Sbjct: 1525 GPTG----RQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558
Score = 53.1 bits (126), Expect = 5e-07
Identities = 69/208 (33%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
GLP + GAP V P R G G P GPS + L GP GR
Sbjct: 2392 GLPGLPGAPGVVGFPGQTGPR---------GEMGQP-----GPSGERGLAGPP---GREG 2434
Query: 309 LSGPFG-PGPQG--GPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGAR-DALSPD 364
+ GP G PGP G GPP G++ G P G LP P R E PG R + P
Sbjct: 2435 IPGPLGPPGPPGSVGPPGAS----GLK-GDKGDP-GVGLPGP-RGERGEPGIRGEDGRPG 2487
Query: 365 PERP-----CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAA 419
E P PG+RG R + + S + G++A + PPGPRG A
Sbjct: 2488 QEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSA--------VILGPPGPRG----AK 2535
Query: 420 GTRSPPGPAESARSRGPRPGWDTPEKGD 447
G GP +GPR D + GD
Sbjct: 2536 GDMGERGPRGLDGDKGPR--GDNGDPGD 2561
Score = 47.8 bits (112), Expect = 2e-05
Identities = 66/216 (30%), Positives = 85/216 (39%), Gaps = 41/216 (18%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-GPS---PKTELG-----G 299
GLP V G P PP PT E G G P GP+ PK E G G
Sbjct: 1507 GLPGVAGRPGAKGPEGPPG---PTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAG 1563
Query: 300 PQGSLGRASLSGPFG------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELA 353
P+G+ G GP G PGP+G P DR +G+ GR P +
Sbjct: 1564 PRGATGVQGERGPPGLVLPGDPGPKGDP--GDRGPIGL-TGRAGPP----------GDSG 1610
Query: 354 PPGARDALSPDPERP-CPGTRGVRSGREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGP 411
PPG + DP RP PG G R GR+G + G+ + R +R PG
Sbjct: 1611 PPGEKG----DPGRPGPPGPVGPR-GRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGV 1665
Query: 412 RGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGD 447
R G + G + PG E R+ P ++G+
Sbjct: 1666 R-GPVGEKGDQGDPG--EDGRNGSPGSSGPKGDRGE 1698
Score = 47.0 bits (110), Expect = 4e-05
Identities = 58/198 (29%), Positives = 73/198 (36%), Gaps = 46/198 (23%)
Query: 254 RGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 313
RGAP + PP L P G G G+P G PK + G GS G L G
Sbjct: 1877 RGAPGILGPQGPPGLPGPV-GPPGQGFPGVPG----GTGPKGDRG-ETGSKGEQGLPGER 1930
Query: 314 G-PGPQGGPPSRDR--RHLGVQIGRVRVPL-------GSALPYPARSELAPPGARDALSP 363
G G G P+ DR G++ +R + GS LP P R + + P
Sbjct: 1931 GLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPP 1990
Query: 364 DPERPC--PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGT 421
E P PG RG++ R PGP+G A G
Sbjct: 1991 GKEGPIGFPGERGLKGDR---------------------------GDPGPQGPPGLALGE 2023
Query: 422 RSPPGPAESARSRGPRPG 439
R PPGP+ A G +PG
Sbjct: 2024 RGPPGPSGLAGEPG-KPG 2040
Score = 46.2 bits (108), Expect = 7e-05
Identities = 55/193 (28%), Positives = 65/193 (33%), Gaps = 23/193 (11%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
G P L P + P+ E G TG P + GP+ L GP G G G G
Sbjct: 2186 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPG 2245
Query: 315 -PGPQG-----GPPSRD-RRHLGVQIGRVRVPLGSALPYPA--RSELAPPGARDALSPDP 365
PG G G P RD G VP LP P + E P GA P
Sbjct: 2246 LPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA-------P 2298
Query: 366 ERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPP 425
+ G G + G +G +GE R PGPRG A P
Sbjct: 2299 GQAVVGLPGAK-GEKGAPGGLAGDLVGEPGAKGD------RGLPGPRGEKGEAGRAGEPG 2351
Query: 426 GPAESARSRGPRP 438
P E + P P
Sbjct: 2352 DPGEDGQKGAPGP 2364
Score = 45.8 bits (107), Expect = 9e-05
Identities = 62/219 (28%), Positives = 78/219 (35%), Gaps = 29/219 (13%)
Query: 249 GLPEVRGAPNVHRLPPPPSL--RTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQGSLG 305
GL +G P +P P + PG+ E G G GP L G +G G
Sbjct: 2581 GLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGF-----MGPRG---LKGERGVKG 2632
Query: 306 RASLSGPFGPGPQGGPPSRD--RRHLGVQIGRVRVPLGSALPYPA--------RSELAPP 355
L G G + GPP R H G ++G VP S P R P
Sbjct: 2633 ACGLDGEKGDKGEAGPPGRPGLAGHKG-EMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQP 2691
Query: 356 GARDALSPDPERPCPGTRGV--RSGREGLLS-PAPRSALGETAPTAQFTFRKVRNPPGPR 412
G + ER PG G SG +G P P ++G P + R PPG R
Sbjct: 2692 GPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGER 2751
Query: 413 GGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 451
+ A G P P E P P EKG+ L+
Sbjct: 2752 --VVGAPGV--PGAPGERGEQGRPGPAGPRGEKGEAALT 2786
Score = 45.4 bits (106), Expect = 1e-04
Identities = 60/194 (30%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 291 PSPKTELG--GPQGSLGRASLSGPFG----------PGPQG--GPPSRDRRHLGVQIGRV 336
P PK + G GP G GRA G G PGP G GP RD +G + G
Sbjct: 1585 PGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRD-GEVG-EKGDE 1642
Query: 337 RVPLGSALPYPA--RSELAPPGARDAL---------SPDPERPCPGTRGVRSGREGLLSP 385
P LP A R PG R + D PG+ G + R P
Sbjct: 1643 GPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPP 1702
Query: 386 APRSALGETAPTAQFT----FRKVRNPPGPRG--------GAMSAAGTRSPPGPAESARS 433
P L +T P A+ R P GP+G G G R PPGP
Sbjct: 1703 GPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGV 1762
Query: 434 RGPRPGWDTPEKGD 447
RGP EKGD
Sbjct: 1763 RGP-----AGEKGD 1771
Score = 43.5 bits (101), Expect = 4e-04
Identities = 50/189 (26%), Positives = 61/189 (32%), Gaps = 41/189 (21%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPS-KQRRGPSPKTELGGPQGSLGRA 307
GLP G P PP P + PG G G P K +G GP+G G
Sbjct: 2079 GLPGTPGPPG----PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVP 2134
Query: 308 SLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
+ G G PGP+G Q G +P G R P+ +
Sbjct: 2135 GIKGDRGEPGPRG------------QDGNPGLP----------------GERGMAGPEGK 2166
Query: 367 RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG-------GAMSAA 419
G RG G P P A G P ++ PG G G A
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAV 2226
Query: 420 GTRSPPGPA 428
G PPGP+
Sbjct: 2227 GLPGPPGPS 2235
Score = 42.4 bits (98), Expect = 0.001
Identities = 57/202 (28%), Positives = 72/202 (35%), Gaps = 23/202 (11%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
G P +P P P + G +GL K +G P L GP+G G + G G
Sbjct: 2428 GPPGREGIPGPLGPPGPPGSVGPPGASGL--KGDKG-DPGVGLPGPRGERGEPGIRGEDG 2484
Query: 315 -PGPQG-----GPP-SRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPER 367
PG +G GPP SR R +G + + L PPG R A ER
Sbjct: 2485 RPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKG---DSAVILGPPGPRGAKGDMGER 2541
Query: 368 PCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPP 425
G G + R P + + GE +R GP+G GA G P
Sbjct: 2542 GPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSP 2601
Query: 426 GPAESARSRGPRPGWDTPEKGD 447
G RG EKGD
Sbjct: 2602 GKDGVPGIRG--------EKGD 2615
Score = 40.0 bits (92), Expect = 0.005
Identities = 50/178 (28%), Positives = 64/178 (35%), Gaps = 24/178 (13%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
GLP G + PP + PG+ G K RGP G G G A
Sbjct: 1737 GLPGAPGERGIEGFRGPPGPQGD-PGVRGPAG----EKGDRGPPGLDGRSGLDGKPGAAG 1791
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
SGP G + G P RD G + LP P+ PPG D +
Sbjct: 1792 PSGPNGAAGKAGDPGRD--------GLPGLRGEQGLPGPS----GPPGLPGKPGEDGK-- 1837
Query: 369 CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPG 426
PG G ++G G P GE + + R+ R+ P GA G + PPG
Sbjct: 1838 -PGLNG-KNGEPG--DPGEDGRKGEKGDSGA-SGREGRDGPKGERGAPGILGPQGPPG 1890
Score = 39.7 bits (91), Expect = 0.006
Identities = 61/219 (27%), Positives = 72/219 (32%), Gaps = 59/219 (26%)
Query: 266 PSLRTPTPGL-TEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG---------- 314
PSL GL T ++ R P P G +G G L G G
Sbjct: 1220 PSLDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGR 1279
Query: 315 ---PGPQGGPPS---RDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERP 368
PGPQG P S + R GR P + P PG + + R
Sbjct: 1280 TGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNP----GTPGAPGLKGSPGLPGPRG 1335
Query: 369 CPGTRGVRS--------------------GREGLLSPA----PRSALGETAPTAQFTFRK 404
PG RG R GR+G P+ PR LG+ P
Sbjct: 1336 DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGP-------- 1387
Query: 405 VRNPPGPRGGAMSA----AGTRSPPGPAESARSRGPRPG 439
R PPG G AM G R PPGP E + G PG
Sbjct: 1388 -RGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPG-EPG 1424
Score = 39.7 bits (91), Expect = 0.006
Identities = 58/223 (26%), Positives = 72/223 (32%), Gaps = 53/223 (23%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G P RG P P PGL G RGP + L G G G
Sbjct: 1997 GFPGERGLKGDRGDPGPQG----PPGLALG---------ERGPPGPSGLAGEPGKPGIPG 2043
Query: 309 LSGPFG-------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP-------------A 348
L G G PG +G + R + G +P P P
Sbjct: 2044 LPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGL 2103
Query: 349 RSELAPPGARDA---------LSPDPERPCPGTRGVRS-----GREGLLSPAPRSALGET 394
E PPG + A P +R PG +G R G++G +P G
Sbjct: 2104 SGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDG--NPGLPGERGMA 2161
Query: 395 APTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 437
P + + R PPGP GG G PPG A GP+
Sbjct: 2162 GPEGKPGLQGPRGPPGPVGG----HGDPGPPGAPGLAGPAGPQ 2200
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 54.3 bits (129), Expect = 2e-07
Identities = 61/191 (31%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
V G P +G P P P L PG + G P K+ P P+ E+G PQG +G+
Sbjct: 338 VPGQPGTKGGPGDQGEPGPQGL----PGFS-----GPPGKEGE-PGPRGEIG-PQGIMGQ 386
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
G GP Q GP R G Q G +P LP + + PG P +
Sbjct: 387 KGDQGERGPVGQPGPQGRQGPK-GEQ-GPPGIPGPQGLP-GVKGDKGSPGKT---GPRGK 440
Query: 367 RPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSP 424
PG G+ G +G + GE P Q R PGP G GA G P
Sbjct: 441 VGDPGVAGL-PGEKG-----EKGESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGP 494
Query: 425 PGPAESARSRG 435
PGP A +RG
Sbjct: 495 PGPRGLAGNRG 505
Score = 49.3 bits (116), Expect = 8e-06
Identities = 65/224 (29%), Positives = 81/224 (36%), Gaps = 63/224 (28%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRAS 308
G+P V+G P LP PP L P PG G P GP L G G G
Sbjct: 96 GIPGVKGQPG---LPGPPGL--PGPGFA-----GPP-----GPPGPVGLPGEIGIRGPKG 140
Query: 309 LSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSA-LPYPARSELAPPGARDALSPDPER 367
GP GP GPP + R G ++ GSA P PPG +
Sbjct: 141 DPGPDGPSGPPGPPGKPGRP-----GTIQGLEGSADFLCPTN---CPPGMKGP------- 185
Query: 368 PCPGTRGVR--SGREGLL-SPAPRSALGETAPTAQFTFRKVRNPPGPRG----------- 413
PG +GV+ +G+ G+L P + G + + PPGP+G
Sbjct: 186 --PGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPK 243
Query: 414 ---------GAMSAAGTRSPPGPAESARSRGPR-PGWDTPEKGD 447
G + A G PPG GPR P EKGD
Sbjct: 244 GETGPHGYKGMVGAIGATGPPG------EEGPRGPPGRAGEKGD 281
Score = 36.2 bits (82), Expect = 0.069
Identities = 56/232 (24%), Positives = 72/232 (31%), Gaps = 59/232 (25%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
GA +P PP + G G P GP +T G +G +G +GP G
Sbjct: 217 GASGEQGIPGPPGPQ---------GIRGYPGMA--GPKGETGPHGYKGMVGAIGATGPPG 265
Query: 315 PGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPG--ARDALSPDPERP---- 368
GPP R +R P G P + PPG +D P
Sbjct: 266 EEGPRGPPGRAGEKGDEGSPGIRGPQGITGP---KGATGPPGINGKDGTPGTPGMKGSAG 322
Query: 369 ---------------CPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
PG G + G P P+ G + P + PGPRG
Sbjct: 323 QAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGK------EGEPGPRG 376
Query: 414 --------GAMSAAGTRSPPGPAESARSRGPR-----PGWDTPE-----KGD 447
G G R P G +GP+ PG P+ KGD
Sbjct: 377 EIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGD 428
Score = 35.4 bits (80), Expect = 0.12
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 35/161 (21%)
Query: 284 PSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSA 343
P +R P P GP G G + G GP + GPP P G
Sbjct: 28 PPGERGPPGPP----GPPGVPGSDGIDGDNGPPGKAGPPG---------------PKGEP 68
Query: 344 LPYPARSELAPPGARDALSPDPERPCP-GTRGVRSGREGLLSPAPRSALGETAPTAQFTF 402
PG D L+ P P G GV+ G+ GL P G P
Sbjct: 69 GKAGPDGPDGKPGI-DGLTGAKGEPGPMGIPGVK-GQPGLPGPPGLPGPGFAGPP----- 121
Query: 403 RKVRNPPGPRG--GAMSAAGTRSPPGPAESARSRGP--RPG 439
PPGP G G + G + PGP + GP +PG
Sbjct: 122 ----GPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPG 158
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 53.5 bits (127), Expect = 4e-07
Identities = 65/211 (30%), Positives = 83/211 (39%), Gaps = 35/211 (16%)
Query: 243 TAGVV--TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGG 299
TAG V TG P +RG P P L+ GG GLP + +G + G
Sbjct: 1033 TAGSVGGTGEPGLRGEPGA---PGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIG 1089
Query: 300 PQGSLGRASLSGPFG----PGPQGGPPSR-DRRHLGV--QIGRVRVP--LGSALPYPARS 350
P G G+ L GP G PG +G P + D+ +G ++G P +G + P AR
Sbjct: 1090 PLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARG 1149
Query: 351 ELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNP 408
G + PD E PG RG + G GL P P+ G + V P
Sbjct: 1150 TRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGL--PGPKGEKGYPGEDST-----VLGP 1202
Query: 409 PGPRGGAMSAAGTRSPPGPAESARSRGPRPG 439
PGPR PGP RG PG
Sbjct: 1203 PGPR----------GEPGPVGDQGERG-EPG 1222
Score = 52.4 bits (124), Expect = 9e-07
Identities = 60/198 (30%), Positives = 73/198 (36%), Gaps = 26/198 (13%)
Query: 254 RGAPNVHRLPPPPSLRTPT-PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGP 312
RG P H P P L P P G G P +G + L GP G G L G
Sbjct: 515 RGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQPVPGEKGDQGLSGLMGPPGMQGDKGLKGH 574
Query: 313 FG----PGPQGGPPSRDRRHLGVQIGRVRV--PLGSALPYPARSELAPPGARDALSPDPE 366
G PG QG P GR + P G+ P A+ + PG L P+ E
Sbjct: 575 PGLPGLPGEQGIPGFAGNIGSPGYPGRQGLAGPEGNPGPKGAQGFIGSPGEAGQLGPEGE 634
Query: 367 RPCPGTRGVR--SGREGL-----------LSPAPRSALGETAPTAQFTFRKVRNPPGPRG 413
R PG RG + GR+G L +P +G T P R P GP G
Sbjct: 635 RGIPGIRGKKGFKGRQGFPGDFGDRGPAGLDGSP-GLVGGTGPPGFPGLRGSVGPVGPIG 693
Query: 414 -----GAMSAAGTRSPPG 426
G M +G + PG
Sbjct: 694 PAGIPGPMGLSGNKGLPG 711
Score = 47.4 bits (111), Expect = 3e-05
Identities = 57/204 (27%), Positives = 75/204 (36%), Gaps = 17/204 (8%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-GPSPKTELGGPQGSLGRA 307
G+P +RGA P P + E G G K+ GPS K + G QG LG
Sbjct: 1231 GVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPK 1290
Query: 308 SLSGPFG-PGPQGGP----PSRDRRHLGVQIGRVRVPL-GSALPYPARSELAPPGARDAL 361
+ G G G G P P + G++ G R L G+ P + PG+
Sbjct: 1291 GIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQ 1350
Query: 362 SPDPERPCPGTRGVRS-----GREGLLSPAPRSAL----GETAPTAQFTFRKVRNPPGPR 412
P E+ PG G++ G +G P L GE F+ P GP
Sbjct: 1351 GPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLTGFQGFPGPKGPE 1410
Query: 413 GGAMSAAGTRSPPGPAESARSRGP 436
G A G P GP + GP
Sbjct: 1411 GDA-GIVGISGPKGPIGHRGNTGP 1433
Score = 47.0 bits (110), Expect = 4e-05
Identities = 59/201 (29%), Positives = 75/201 (37%), Gaps = 40/201 (19%)
Query: 249 GLPEVRGAPNVHRL---PPPPSLRTPTPGLTEGGGTGLP-SKQRRGPSPKTELGGPQGSL 304
GLP +RG P L P PP ++ G +GLP S +GP + L G G
Sbjct: 1315 GLPGIRGGPGRTGLAGAPGPPGVK---------GSSGLPGSPGIQGPKGEQGLPGQPGIQ 1365
Query: 305 GRASLSGPFGP-GPQGGPPSRDRR-HLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
G+ G G GP G P + + GVQ L +P P G +
Sbjct: 1366 GKRGHRGAQGDQGPCGDPGLKGQPGEYGVQ------GLTGFQGFPGPK--GPEGDAGIVG 1417
Query: 363 PDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
+ G RG GREG++ P G T P + FR P GPRG
Sbjct: 1418 ISGPKGPIGHRGNTGPLGREGIIGPT-----GRTGPRGEKGFRGETGPQGPRG------- 1465
Query: 421 TRSPPGPAESARSRGPRPGWD 441
PGP + GPR D
Sbjct: 1466 ---QPGPPGPPGAPGPRKQMD 1483
Score = 42.7 bits (99), Expect = 7e-04
Identities = 53/175 (30%), Positives = 61/175 (34%), Gaps = 34/175 (19%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGP-----PSRDRRHLGVQ 332
G GLP GP GP G G L GP G PGP+G P P ++
Sbjct: 735 GAVGLP-----GPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKG 789
Query: 333 IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGV--RSGREGLLSPAPRSA 390
+ R P G + E P GA L P R PG +G G EGL
Sbjct: 790 LLGNRGPPGPPGLKGTQGEEGPIGAFGELGP---RGKPGQKGYAGEPGPEGLKGEVGDQG 846
Query: 391 ----LGETAP---------TAQFTFRKVRNPPGPRG-----GAMSAAGTRSPPGP 427
+GET P T + R PGP G G M G PGP
Sbjct: 847 NIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGP 901
Score = 42.4 bits (98), Expect = 0.001
Identities = 57/207 (27%), Positives = 74/207 (35%), Gaps = 37/207 (17%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRR-------GPSPKTELGGPQ 301
GL G P P L+ PG T G GLP + GP + + GP
Sbjct: 957 GLIGKTGNPGERGFQGKPGLQG-LPGST--GDRGLPGEPGLRGLQGDVGPPGEMGMEGPP 1013
Query: 302 GSLGRASLSGPFG----------------PGPQGGPPSRDRRHLGVQIGRVRVPLGSALP 345
G+ G + L G G PG +G P + L + G VP G LP
Sbjct: 1014 GTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLP 1073
Query: 346 YP--ARSELAPPGARDALSPDPERPCPGTRGVRS--GREGLLSPAPRSALGETAPTAQFT 401
+ E+ PG L + PG G+ G+ G P + G+ PT +
Sbjct: 1074 GEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRG--RPGKKGDKGQIGPTGEV- 1130
Query: 402 FRKVRNPPGPRG--GAMSAAGTRSPPG 426
R PPG G G A GTR G
Sbjct: 1131 --GSRGPPGKIGKSGPKGARGTRGAVG 1155
Score = 42.0 bits (97), Expect = 0.001
Identities = 71/246 (28%), Positives = 91/246 (36%), Gaps = 58/246 (23%)
Query: 243 TAGVVTGLPEVRGAPNVHRLPPPPSLR--------TPTPGLT--------EG--GGTGLP 284
TAG + G P G LP PP +R T PGL EG G G+P
Sbjct: 721 TAGEL-GEPGYPGDKGAVGLPGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIP 779
Query: 285 SKQRRGPS-PKTELG-----GPQGSLGRASLSGPFGP----GPQGGP----------PSR 324
+ GP PK LG GP G G GP G GP+G P P
Sbjct: 780 GQN--GPEGPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEG 837
Query: 325 DRRHLGVQ--IGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGL 382
+ +G Q IG++ G P E+ G+ + ER PG G + G +G+
Sbjct: 838 LKGEVGDQGNIGKI----GETGPVGLPGEVGMTGS---IGEKGERGSPGPLGPQ-GEKGV 889
Query: 383 LS-PAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWD 441
+ P P G P R PPG + G G+R P G +G +
Sbjct: 890 MGYPGPPGVPGPIGPLGLPGHVGARGPPGSQ-GPKGQRGSRGPDGLLGEQGIQGAK---- 944
Query: 442 TPEKGD 447
EKGD
Sbjct: 945 -GEKGD 949
Score = 35.8 bits (81), Expect = 0.090
Identities = 48/198 (24%), Positives = 66/198 (33%), Gaps = 43/198 (21%)
Query: 247 VTGLPEVRGAPN-------------VHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSP 293
+ G+P RG P V PP + P G + GP
Sbjct: 1105 IVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDG 1164
Query: 294 KTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELA 353
+ + G +G G+ SG GP + G P D LG
Sbjct: 1165 EPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLG----------------------- 1201
Query: 354 PPGARDALSP---DPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPG 410
PPG R P ER PG G + G G+ P R A G+ P + + + G
Sbjct: 1202 PPGPRGEPGPVGDQGERGEPGAEGYK-GHVGV--PGLRGATGQQGPPGEPGDQGEQGLKG 1258
Query: 411 PRGGAMSAAGTRSPPGPA 428
R G+ G + PGP+
Sbjct: 1259 ER-GSEGNKGKKGAPGPS 1275
Score = 34.3 bits (77), Expect = 0.26
Identities = 49/174 (28%), Positives = 59/174 (33%), Gaps = 35/174 (20%)
Query: 281 TGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-------PGPQGGP-------PSRDR 326
T L + RGP T GP G G A + GP G PGP G P P +
Sbjct: 480 TMLEMEYLRGPKGDT---GPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPK 536
Query: 327 RHLGVQIGRVRVPLGSALPYPARSELAPPGAR--DALSPDPERP-CPGTRGVRSGREGLL 383
G G+ VP G + PPG + L P P PG +G+ +
Sbjct: 537 GDPGFSPGQ-PVP-GEKGDQGLSGLMGPPGMQGDKGLKGHPGLPGLPGEQGIPGFAGNIG 594
Query: 384 SPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPR 437
SP G P PGP+G A G PG A G R
Sbjct: 595 SPGYPGRQGLAGPEGN---------PGPKG----AQGFIGSPGEAGQLGPEGER 635
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 53.1 bits (126), Expect = 5e-07
Identities = 57/186 (30%), Positives = 76/186 (40%), Gaps = 15/186 (8%)
Query: 247 VTGLPEVRGAPNVHRLPPPPSLRTPT--PG-LTEGGGTGLPSKQRRGPSPKTELGGPQGS 303
++ L +++G NV P PP P PG + E G GLP + P K + G P G
Sbjct: 825 MSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGF-PGVKGDRG-PAGP 882
Query: 304 LGRASLSG-PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALS 362
G A +SG P PGP G P R IG P G + + PGA+ +
Sbjct: 883 PGIAGMSGKPGAPGPPGVPGEPGERGPVGDIG-FPGPEGPSGKPGINGKDGIPGAQGIMG 941
Query: 363 PDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAG 420
PG RG + R P R + GE + P GP G G+M + G
Sbjct: 942 K------PGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPG 995
Query: 421 TRSPPG 426
+ PPG
Sbjct: 996 HQGPPG 1001
Score = 42.7 bits (99), Expect = 7e-04
Identities = 60/201 (29%), Positives = 72/201 (35%), Gaps = 40/201 (19%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPT--PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 306
G+P +G + +P P PT PGL G TG P GP G+ G
Sbjct: 756 GIPGEKGDEGLQGIPGIPGAPGPTGPPGLM--GRTGHP--------------GPTGAKGE 799
Query: 307 ASLSGPFG-PGPQGGP--PSRDRRHLGVQI---GRVRVPLGSALPYPARSELAPPGARDA 360
GP G PGP G P P +R + G V VP + P P PPG +
Sbjct: 800 KGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVP---SYPGPP----GPPGPKGD 852
Query: 361 LSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAG 420
P E PG G+ G EG P + G P PGP G G
Sbjct: 853 PGPVGE---PGAMGL-PGLEGF--PGVKGDRGPAGPPGIAGMSGKPGAPGP-PGVPGEPG 905
Query: 421 TRSPPGPAESARSRGP--RPG 439
R P G GP +PG
Sbjct: 906 ERGPVGDIGFPGPEGPSGKPG 926
Score = 30.8 bits (68), Expect = 2.9
Identities = 51/212 (24%), Positives = 68/212 (32%), Gaps = 25/212 (11%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGR 306
G P G P H +P ++ G G G GLP + P L G G G
Sbjct: 537 GPPGDVGLPGEHGIPGKQGIKGEK-GDPGGIIGPPGLPGPKGEAGPPGKSLPGEPGLDGN 595
Query: 307 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPE 366
GP GP + G P + + +P + PA E G R
Sbjct: 596 PGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPA-GEPGIQGPRGLPGLPGT 654
Query: 367 RPCPGTRGV--RSGREGLLSPAP-----------RSALGETAPTAQFTFRKVRNPPGPRG 413
PG GV R G+ GL P + L Q + +++ G G
Sbjct: 655 PGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEG 714
Query: 414 GA--------MSAAGTRSPPGPAESARSRGPR 437
GA M+ G P GP GP+
Sbjct: 715 GAGEPGKYDSMARKGDIGPRGPPGIPGREGPK 746
Score = 30.4 bits (67), Expect = 3.8
Identities = 60/226 (26%), Positives = 78/226 (34%), Gaps = 52/226 (23%)
Query: 248 TGLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA 307
TG P G P P PP ++ G+ + G G +K +G + + E GG +G G
Sbjct: 414 TGPPGKPGPPGP---PGPPGIQ----GIHQTLG-GYYNKDNKG-NDEHEAGGLKGDKGET 464
Query: 308 SLSG---PFGPGPQGGPPSR--------DRRHLGVQIGRVRVPLGSALPYP--------- 347
L G GP Q G P DR GV IG V P P
Sbjct: 465 GLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGV-IGSQGVKGEPGDPGPPGLIGSPGL 523
Query: 348 -----ARSELAPPGARDALSPDPERPCPGTRGVRS---------GREGLLSPAPRSALGE 393
+ + P G + E PG +G++ G GL P P+ G
Sbjct: 524 KGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGL--PGPKGEAGP 581
Query: 394 TAPTAQFTFRKVRNP--PGPRGGAMSAAGTRSPPGPAESARSRGPR 437
+ NP PGPRG G R PG S GP+
Sbjct: 582 PGKSLPGEPGLDGNPGAPGPRG----PKGERGLPGVHGSPGDIGPQ 623
Score = 29.6 bits (65), Expect = 6.5
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 288 RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYP 347
R GP K L GP G PGPQG + R G + L + P
Sbjct: 1055 RPGPPGKDGLPGPPGD-----------PGPQGYRGQKGER------GEPGIGLPGSPGLP 1097
Query: 348 ARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSP 385
S L PG+ A P P+ P PG G R E L P
Sbjct: 1098 GTSALGLPGSPGA--PGPQGP-PGPSG-RCNPEDCLYP 1131
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 53.1 bits (126), Expect = 5e-07
Identities = 60/225 (26%), Positives = 78/225 (34%), Gaps = 53/225 (23%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQ-------RRGPSPKTELG--G 299
G+ +G P LP P + + G GLP + + P PK + G G
Sbjct: 498 GVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKG 557
Query: 300 PQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARD 359
+G+ G+ L GP GP + G + P G P S PPG
Sbjct: 558 SKGNQGQRGLPGPEGPKGEPG---------------IMGPFG----MPGTSIPGPPG--- 595
Query: 360 ALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTF-----------RKVRNP 408
P +R PG G + G GL P+ G P R + P
Sbjct: 596 ---PKGDRGGPGIPGFK-GEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGP 651
Query: 409 PGPRG-------GAMSAAGTRSPPGPAESARSRGPRPGWDTPEKG 446
PGP G GA G R PPGP+ P DT +KG
Sbjct: 652 PGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKG 696
Score = 39.3 bits (90), Expect = 0.008
Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 262 LPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG---PFGPGPQ 318
+P PP + G G G P RGP + GP+G +G L G P PGP+
Sbjct: 590 IPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKG---VQGPRGPVGAPGLKGDGYPGVPGPR 646
Query: 319 G--GPPS-RDRRHLGVQIGR----VRVPLGSALPYPARSELAPPG--ARDALSPDPERPC 369
G GPP R +G + VR P G + P ++ P G + L P P
Sbjct: 647 GLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQ-GPKGDTGQKGLPGPPGPPG 705
Query: 370 PGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRG--GAMSAAGTRSPPGP 427
G++G++ + P P+ +G P + G RG G G PG
Sbjct: 706 YGSQGIKGEQGPQGFPGPKGTMGHGLPGQ-------KGEHGERGDVGKKGDKGEIGEPGS 758
Query: 428 AESARSRGPR 437
+GP+
Sbjct: 759 PGKQGLQGPK 768
Score = 35.8 bits (81), Expect = 0.090
Identities = 61/229 (26%), Positives = 73/229 (31%), Gaps = 55/229 (24%)
Query: 249 GLPEVRGAPNVHRLPPPPSLRTP--TPGLT------EGGGTGLPS----KQRRGPSPKTE 296
G P G P H P R P PG E G G+P K RG K
Sbjct: 245 GDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPG 304
Query: 297 LGGPQGSLGRASLSGPFG----------PGPQG--------GPPSRDRRHLGVQIGRVRV 338
+ G +GS G GP G PGP+G GPP IG+ +
Sbjct: 305 IKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGI 364
Query: 339 PLGSALPYPARSELAPPGARDALSPDPERP--CPGTRGVRSGREGLLSPAPRSALGETAP 396
G P G + P P P PG RG+ EG P P+ G P
Sbjct: 365 K-GERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPG--EGF--PGPKGEKGSEGP 419
Query: 397 TAQFTFRKVR--------NPPGPRG----------GAMSAAGTRSPPGP 427
T + + P GP+G G G PPGP
Sbjct: 420 TGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGP 468
Score = 31.6 bits (70), Expect = 1.7
Identities = 46/169 (27%), Positives = 61/169 (36%), Gaps = 37/169 (21%)
Query: 279 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRV 338
G G P ++G + G +G GR GP G G G P R G V
Sbjct: 352 GSPGAPGIGQQG------IKGERGQEGRPGAPGPIGVGEPGQPGPR---------GPEGV 396
Query: 339 PLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVR-SGREGLLSP-APRSALGETAP 396
P LP E P + S P P G +G+ G +G + P P+ +G
Sbjct: 397 PGERGLP----GEGFPGPKGEKGSEGPTGP-QGLQGLSIKGEKGDIGPVGPQGPMGIPGI 451
Query: 397 TAQFT--FRKVRNPPGPRG-------GAMSAAGTRSPPGPAESARSRGP 436
+Q + PPGP+G G+ G P GP RGP
Sbjct: 452 GSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGP------RGP 494
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 52.8 bits (125), Expect = 7e-07
Identities = 58/190 (30%), Positives = 71/190 (37%), Gaps = 21/190 (11%)
Query: 255 GAPNVHRLPPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 314
G P R PPP P PG P QR+GP P + PQG + L P G
Sbjct: 454 GPPAQQR--PPPQGGPPQPG---------PGPQRQGP-PLQQRPPPQGQQHLSGLGPPAG 501
Query: 315 -PGPQGGP-PSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGT 372
P PQ P P+ + Q G A APP AR SP P+R
Sbjct: 502 SPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPP 561
Query: 373 RGVRSGREGLLSPAPRSALGETAPTAQFTFRKVRNPPGPRGGAMSAAGT----RSPPGPA 428
+ R + + PAP A G P Q + PPGP G A+ R+ P
Sbjct: 562 QATR--QTSVSGPAPPKASG-APPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTT 618
Query: 429 ESARSRGPRP 438
+ R GP P
Sbjct: 619 QQPRPSGPGP 628
Score = 47.8 bits (112), Expect = 2e-05
Identities = 44/145 (30%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 247 VTGLPEVRGAPNVHRLPPP------PSLRTPTPGLTEG-------GGTGLPSKQR--RGP 291
++GL G+P RLP P P+ + P +G GG G P R P
Sbjct: 493 LSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASP 552
Query: 292 SPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSE 351
SP+ + G PQ + + S+SGP P G PP +R G + P G A P S+
Sbjct: 553 SPQRQAGPPQATR-QTSVSGPAPPKASGAPPGGQQRQ-----GPPQKPPGPAGPTRQASQ 606
Query: 352 LAP---PGARDALSPDPERPCPGTR 373
P G P P P P R
Sbjct: 607 AGPVPRTGPPTTQQPRPSGPGPAGR 631
Score = 34.7 bits (78), Expect = 0.20
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 19/162 (11%)
Query: 251 PEVRGAPNVHRLPPPPSLRTPTPGLTEGGGTGLP--SKQRRGPSPKTELGGPQGSLGRAS 308
P +P PP + +T G +G P +QR+GP K GP G +AS
Sbjct: 548 PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPP--GPAGPTRQAS 605
Query: 309 LSGPFGPGPQGGPPSRDR-RHLGVQIGRVRVPLGSALPYPAR--SELAPPGARDALSPDP 365
+GP P+ GPP+ + R G P G P A+ S+ PP A A + P
Sbjct: 606 QAGPV---PRTGPPTTQQPRPSGPG------PAGRPKPQLAQKPSQDVPPPA-TAAAGGP 655
Query: 366 ERPCPGTRGVRSGREGLLSPA-PRSALGETAPTAQFTFRKVR 406
P + L PA PR +L + A+ T R +R
Sbjct: 656 PHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAE-TIRSLR 696
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,776,455
Number of Sequences: 37866
Number of extensions: 1808510
Number of successful extensions: 11963
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 869
Number of HSP's that attempted gapping in prelim test: 7256
Number of HSP's gapped (non-prelim): 2991
length of query: 488
length of database: 18,247,518
effective HSP length: 106
effective length of query: 382
effective length of database: 14,233,722
effective search space: 5437281804
effective search space used: 5437281804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.