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Search of human proteins with 23238202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23238202 tumor necrosis factor receptor superfamily, member
19 isoform 1 precursor [Homo sapiens]
(423 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23238202 tumor necrosis factor receptor superfamily, member 1... 884 0.0
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 870 0.0
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 189 4e-48
gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] 68 2e-11
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 52 1e-06
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 52 1e-06
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 51 2e-06
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 45 1e-04
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 45 1e-04
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 45 1e-04
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 45 1e-04
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 44 2e-04
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens] 43 5e-04
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens] 43 5e-04
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 41 0.002
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 39 0.009
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 38 0.015
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 38 0.020
gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens] 38 0.020
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 37 0.034
gi|143770880 laminin, beta 4 [Homo sapiens] 36 0.058
gi|63053515 keratin associated protein 10-3 [Homo sapiens] 36 0.058
gi|63053512 keratin associated protein 10-1 [Homo sapiens] 36 0.075
gi|148743793 osteoprotegerin precursor [Homo sapiens] 35 0.098
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 35 0.098
gi|167614504 laminin, beta 1 precursor [Homo sapiens] 35 0.17
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 35 0.17
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 35 0.17
gi|38490571 keratin associated protein 10-7 [Homo sapiens] 35 0.17
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 34 0.22
>gi|23238202 tumor necrosis factor receptor superfamily, member 19
isoform 1 precursor [Homo sapiens]
Length = 423
Score = 884 bits (2284), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK 60
MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK
Sbjct: 1 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK 60
Query: 61 ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG
Sbjct: 61 ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
Query: 121 FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT 180
FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT
Sbjct: 121 FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT 180
Query: 181 VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD 240
VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD
Sbjct: 181 VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD 240
Query: 241 SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI 300
SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI
Sbjct: 241 SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI 300
Query: 301 CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV 360
CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV
Sbjct: 301 CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV 360
Query: 361 PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQVRQRL 420
PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQVRQRL
Sbjct: 361 PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQVRQRL 420
Query: 421 GSL 423
GSL
Sbjct: 421 GSL 423
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 870 bits (2247), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK 60
MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK
Sbjct: 1 MALKVLLEQEKTFFTLLVLLGYLSCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSK 60
Query: 61 ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG
Sbjct: 61 ECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
Query: 121 FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT 180
FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT
Sbjct: 121 FYRKTKLVGFQDMECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALAT 180
Query: 181 VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD 240
VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD
Sbjct: 181 VLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRD 240
Query: 241 SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI 300
SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI
Sbjct: 241 SVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSI 300
Query: 301 CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV 360
CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV
Sbjct: 301 CGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAV 360
Query: 361 PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQ 415
PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQ
Sbjct: 361 PVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQ 415
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 189 bits (480), Expect = 4e-48
Identities = 86/196 (43%), Positives = 116/196 (59%)
Query: 33 DCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPC 92
DC++ E+ D+ G CV C +CGPG ELSK+CG+G G DA C C R+K WG +C+ C
Sbjct: 2 DCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
Query: 93 LDCAVVNRFQKANCSATSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPPPYEPHCASK 152
+ CAV+NR QK NC+ATS+A+CGDCLP FYRKT++ G QD EC+PC P E CA +
Sbjct: 62 ITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAFQ 121
Query: 153 VNLVKIASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQDIQ 212
++LV+ + P++ L A++ S L LA L L +YCK+ F L +
Sbjct: 122 LSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQRGGLLQFEAD 181
Query: 213 YNGSELSCFDRPQLHE 228
E S F P E
Sbjct: 182 KTAKEESLFPVPPSKE 197
>gi|11641231 ectodysplasin A receptor precursor [Homo sapiens]
Length = 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 16 LLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELSKECGFG-YGEDAQCV 73
L VL+ L C E +C + E+ +++ G C C CGPG E CG+G ED CV
Sbjct: 13 LPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCV 72
Query: 74 TCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAICGDCLPGFYR-KTKLV 128
C +F + G+Q C+ DC F +A +DA CG CLPG+Y + +
Sbjct: 73 PCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAECGPCLPGYYMLENRPR 128
Query: 129 GFQDMECVPCGDPPP 143
M C C PP
Sbjct: 129 NIYGMVCYSCLLAPP 143
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 51 QCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATS 110
QC PG E + G G C C F WG C+P C++ R + AT
Sbjct: 31 QCPPGEEPDLDPGQG----TLCRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGMATR 86
Query: 111 DAICGDCLPGFYRKTKLVGFQDMECVPCGDPP 142
D +CGDC PG++ G + C PC P
Sbjct: 87 DTLCGDCWPGWFGPW---GVPRVPCQPCSWAP 115
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 51 QCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSATS 110
QC PG E + G G C C F WG C+P C++ R + AT
Sbjct: 31 QCPPGEEPDLDPGQG----TLCRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGMATR 86
Query: 111 DAICGDCLPGFYRKTKLVGFQDMECVPCGDPP 142
D +CGDC PG++ G + C PC P
Sbjct: 87 DTLCGDCWPGWFGPW---GVPRVPCQPCSWAP 115
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
Query: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPP 143
PCLDC ++R + CS D CG CLPGFY CV C PPP
Sbjct: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFYE-------HGDGCVSCPTPPP 184
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
Query: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
PCLDC ++R + CS D CG CLPGFY
Sbjct: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 170
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 45.1 bits (105), Expect = 1e-04
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 30 ESGDCRQQE---FRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGF 86
E+ CR QE + + C C++C PG +S +C D C TC + + E W +
Sbjct: 39 ENQTCRDQEKEYYEPQHRIC--CSRCPPGTYVSAKCS--RIRDTVCATCAENSYNEHWNY 94
Query: 87 ----QKCKPC------LDCAVVNRFQKANCSATSDAIC-------------GDCLPGFYR 123
Q C+PC + A +K C C DC PG
Sbjct: 95 LTICQLCRPCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEA 154
Query: 124 KTK-LVGFQDMECVPC--------GDPPPPYEPHCASKVNLVKIASTASSPRDT 168
+ K VG + CVPC P +PH + + A+ ++ DT
Sbjct: 155 ELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDT 208
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
Query: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
PCLDC ++R + CS D CG CLPGFY
Sbjct: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 170
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
Query: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
PCLDC ++R + CS D CG CLPGFY
Sbjct: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 170
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 89 CKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
C+PCLDC ++R + CS D CG CLPGFY
Sbjct: 93 CQPCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 125
Score = 33.5 bits (75), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 CLDCAVVNRFQKANCSATSDAICGDCLPGFY---RKTKLVGFQDMECVPCGD 140
C C ++ NCSA +D CG C PG++ + ++ V C PC D
Sbjct: 48 CRGCPAASQVALENCSAVADTRCG-CKPGWFVECQVSQCVSSSPFYCQPCLD 98
>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
Length = 1111
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 29 CESGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYG----EDAQCVTCRLHRFKEDW 84
C SG R G C+PCN C G + G Y D +C C + + +
Sbjct: 396 CASGYKRDSARLGPFGTCIPCN-CQGGGACDPDTGDCYSGDENPDIECADCPIGFYNDPH 454
Query: 85 GFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
+ CKPC N F + T + +C +C PG
Sbjct: 455 DPRSCKPC---PCHNGFSCSVMPETEEVVCNNCPPG 487
Score = 30.8 bits (68), Expect = 2.4
Identities = 34/127 (26%), Positives = 45/127 (35%), Gaps = 29/127 (22%)
Query: 51 QCGPGMELSKECGFGYGEDAQCVTCR-----LHRFKEDWGFQKCKPCLDCAVVNRFQKAN 105
QC EL ++ G G+ +C+ C +H K GF + + C N K +
Sbjct: 36 QCIFDRELHRQTGNGF----RCLNCNDNTDGIHCEKCKNGFYRHRERDRCLPCNCNSKGS 91
Query: 106 CSATSD-------------AICGDCLPGFYRKTKLVGFQDM-------ECVPCGDPPPPY 145
SA D A C CLPGF+ T QD +C P G P
Sbjct: 92 LSARCDNSGRCSCKPGVTGARCDRCLPGFHMLTDAGCTQDQRLLDSKCDCDPAGIAGPCD 151
Query: 146 EPHCASK 152
C K
Sbjct: 152 AGRCVCK 158
>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
Length = 1193
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 29 CESGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYG----EDAQCVTCRLHRFKEDW 84
C SG R G C+PCN C G + G Y D +C C + + +
Sbjct: 396 CASGYKRDSARLGPFGTCIPCN-CQGGGACDPDTGDCYSGDENPDIECADCPIGFYNDPH 454
Query: 85 GFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPG 120
+ CKPC N F + T + +C +C PG
Sbjct: 455 DPRSCKPC---PCHNGFSCSVMPETEEVVCNNCPPG 487
Score = 30.8 bits (68), Expect = 2.4
Identities = 34/127 (26%), Positives = 45/127 (35%), Gaps = 29/127 (22%)
Query: 51 QCGPGMELSKECGFGYGEDAQCVTCR-----LHRFKEDWGFQKCKPCLDCAVVNRFQKAN 105
QC EL ++ G G+ +C+ C +H K GF + + C N K +
Sbjct: 36 QCIFDRELHRQTGNGF----RCLNCNDNTDGIHCEKCKNGFYRHRERDRCLPCNCNSKGS 91
Query: 106 CSATSD-------------AICGDCLPGFYRKTKLVGFQDM-------ECVPCGDPPPPY 145
SA D A C CLPGF+ T QD +C P G P
Sbjct: 92 LSARCDNSGRCSCKPGVTGARCDRCLPGFHMLTDAGCTQDQRLLDSKCDCDPAGIAGPCD 151
Query: 146 EPHCASK 152
C K
Sbjct: 152 AGRCVCK 158
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 40.8 bits (94), Expect = 0.002
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 54/211 (25%)
Query: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQK----- 88
CR++++ S C C+ C PG +L +C + +C+ C F + W +
Sbjct: 26 CREKQYLINS-QC--CSLCQPGQKLVSDCT--EFTETECLPCGESEFLDTWNRETHCHQH 80
Query: 89 --CKPCLDCAVVNRFQKANCSATSDAICG-------------------DCLPGFYRKTKL 127
C P L R Q+ S T D IC C PGF K
Sbjct: 81 KYCDPNLGL----RVQQKGTSET-DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIA 135
Query: 128 VGFQDMECVPC-----GDPPPPYE-----PHCASKVNLVKIAST-----ASSPRDTALAA 172
G D C PC + +E C +K +V+ A T P+D A
Sbjct: 136 TGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRAL 195
Query: 173 VICSALATVLLALLILCVIYCKRQFMEKKPS 203
V+ + +L A+L++ V K + KKP+
Sbjct: 196 VVIPIIFGILFAILLVLVFIKK---VAKKPT 223
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 38.9 bits (89), Expect = 0.009
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRF-KEDWGFQKCKPC 92
C Q ++ N + C +C G L +C G G+D C C F + + C C
Sbjct: 44 CPQGKYIHPQNNSICCTKCHKGTYLYNDCP-GPGQDTDCRECESGSFTASENHLRHCLSC 102
Query: 93 LDC-AVVNRFQKANCSATSDAICGDCLPGFYR 123
C + + + ++C+ D +CG C YR
Sbjct: 103 SKCRKEMGQVEISSCTVDRDTVCG-CRKNQYR 133
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 38.1 bits (87), Expect = 0.015
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDW-GFQKCKPC 92
C++ E+ S C C +C PG + + CG G C C + G KC C
Sbjct: 42 CKEDEYPVGS-EC--CPKCSPGYRVKEACGELTG--TVCEPCPPGTYIAHLNGLSKCLQC 96
Query: 93 LDC-AVVNRFQKANCSATSDAICGDCLPGFY 122
C + NCS T +A+CG C PG +
Sbjct: 97 QMCDPAMGLRASRNCSRTENAVCG-CSPGHF 126
Score = 29.6 bits (65), Expect = 5.4
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 46 CVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKAN 105
C+ C C P M L E+A C C F C C A + Q+
Sbjct: 93 CLQCQMCDPAMGLRASRNCSRTENAVC-GCSPGHFCIVQDGDHCAACRAYATSSPGQRVQ 151
Query: 106 CSAT--SDAICGDCLPGFY 122
T D +C +C PG +
Sbjct: 152 KGGTESQDTLCQNCPPGTF 170
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 37.7 bits (86), Expect = 0.020
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 9 QEKTFFTLLVLLGYLS-CKVTCE-SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGY 66
+ + F LL+L L+ +V + + C ++ + G C CN+C PG +S +C
Sbjct: 7 RRRPLFALLLLCALLARLQVALQIAPPCTSEKHYEHLGRC--CNKCEPGKYMSSKC--TT 62
Query: 67 GEDAQCVTCRLHRFKEDWGFQ-KC---------KPCLDCAVVNRFQKANCSATS------ 110
D+ C+ C + + W + KC K + N C+ T+
Sbjct: 63 TSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYHWSQ 122
Query: 111 DAIC----GDCLPGFYRKTKLVGFQDMECVPC 138
D C +C PG + L +D C PC
Sbjct: 123 DCECCRRNTECAPGLGAQHPLQLNKDTVCKPC 154
Score = 33.5 bits (75), Expect = 0.37
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 43 SGNCVPCN---QCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGF-QKCKPCLDCAVV 98
S +C C +C PG L + +D C C F + + KC+P +C +
Sbjct: 121 SQDCECCRRNTECAPG--LGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFL 178
Query: 99 NRFQKANCSATSDAICGDCLP 119
+ + + + SDA+C LP
Sbjct: 179 GKRVEHHGTEKSDAVCSSSLP 199
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 114 CGDCLPGFYRKTKLVGFQDMECVPCGDPPPPY------EPHC-------ASKVNLVKIAS 160
C C PG Y +K D C+PCG P Y E C K + +A
Sbjct: 47 CNKCEPGKYMSSKCTTTSDSVCLPCG--PDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG 104
Query: 161 TASSPRDTALAA 172
+++PR A A
Sbjct: 105 NSTTPRRCACTA 116
>gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens]
Length = 988
Score = 37.7 bits (86), Expect = 0.020
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 49 CNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANCSA 108
C CGPG E G QCV+C +++ G C PC + N S
Sbjct: 630 CVACGPGTHFGGELG-------QCVSCMPGTYQDMEGQLSCTPCPSSDGLGLPGARNVSE 682
Query: 109 TSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPP 143
G C PGF+ GF+ + P G P
Sbjct: 683 CG----GQCSPGFFSAD---GFKPCQACPVGTYQP 710
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 37.0 bits (84), Expect = 0.034
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 49 CNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQ----KCKPCLDCAVVNRFQKA 104
CN+C PG C C H +D + K K L+ A +F+
Sbjct: 301 CNRCCPGYHQQPWRPGTVSSGNTCEACNCHNKAKDCYYDESVAKQKKSLNTA--GQFRGG 358
Query: 105 ----NCSATSDAI-CGDCLPGFYRKTKLVGFQDMECVPCGDPP 142
NC + I C C+ G+YR K+ ++D C PC P
Sbjct: 359 GVCINCLQNTMGINCETCIDGYYRPHKVSPYEDEPCRPCNCDP 401
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 36.2 bits (82), Expect = 0.058
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 22/126 (17%)
Query: 48 PCNQ----CGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCL--DCAVVNRF 101
PCN+ C P CG G+ C C + Q C+PCL D N++
Sbjct: 864 PCNRFAELCDPETGSCFNCG-GFTTGRNCERCIDGYYGNPSSGQPCRPCLCPDDPSSNQY 922
Query: 102 QKANCSA---TSDAIC-----------GDCLPGFYRKTKLVGFQDMECVPCGDPPPPYEP 147
+C +SD IC G+C GFY ++ G C C + +P
Sbjct: 923 FAHSCYQNLWSSDVICNCLQGYTGTQCGECSTGFYGNPRISGAPCQPCA-CNNNIDVTDP 981
Query: 148 HCASKV 153
S+V
Sbjct: 982 ESCSRV 987
>gi|63053515 keratin associated protein 10-3 [Homo sapiens]
Length = 221
Score = 36.2 bits (82), Expect = 0.058
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 233 ACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGC 269
+CC C PV + S CC+ AC P+P GC
Sbjct: 35 SCCAPAPCLTLVCTPVSCVSSPCCQAACEPSPCQSGC 71
>gi|63053512 keratin associated protein 10-1 [Homo sapiens]
Length = 282
Score = 35.8 bits (81), Expect = 0.075
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 233 ACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGC 269
+CC C PV + S CC+ AC P+P GC
Sbjct: 35 SCCAPAPCLTLVCTPVSRVSSPCCQAACEPSPCQSGC 71
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 35.4 bits (80), Expect = 0.098
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 49 CNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCKPCLDCAVVNR---FQKAN 105
C++C PG L + C + C C H + + W CL C+ V + + K
Sbjct: 41 CDKCPPGTYLKQHCTAKW--KTVCAPCPDHYYTDSW--HTSDECLYCSPVCKELQYVKQE 96
Query: 106 CSATSDAICGDCLPGFY 122
C+ T + +C +C G Y
Sbjct: 97 CNRTHNRVC-ECKEGRY 112
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 35.4 bits (80), Expect = 0.098
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 16 LLVLLGYL--SCKVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCV 73
LL+LLG K C +G SG C C C G +++ CG C
Sbjct: 17 LLLLLGVSLGGAKEACPTG------LYTHSGEC--CKACNLGEGVAQPCG---ANQTVCE 65
Query: 74 TCRLHRFKEDW--GFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFYR 123
C D + CKPC +C V + A C DA+C C G+Y+
Sbjct: 66 PCLDSVTFSDVVSATEPCKPCTEC-VGLQSMSAPCVEADDAVC-RCAYGYYQ 115
>gi|167614504 laminin, beta 1 precursor [Homo sapiens]
Length = 1786
Score = 34.7 bits (78), Expect = 0.17
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 49 CNQCGPGME-------LSKECGFGYGEDAQC--VTCRLHRFKE------------DWGFQ 87
CN+C PG EC +A C VT + H F+ WGF
Sbjct: 803 CNRCAPGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFP 862
Query: 88 KCKPCL------DCAVVNRFQKANC-SATSDAICGDCLPGFYRKTKLVGFQDMECVPCGD 140
C+PC DC V + NC T C CL G+Y ++G D C PC
Sbjct: 863 SCQPCQCNGHADDCDPVTG-ECLNCQDYTMGHNCERCLAGYY-GDPIIGSGD-HCRPCPC 919
Query: 141 PPPP 144
P P
Sbjct: 920 PDGP 923
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 34.7 bits (78), Expect = 0.17
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 36/131 (27%)
Query: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQK----- 88
CR++++ S C C+ C PG +L +C + +C+ C F + W +
Sbjct: 26 CREKQYLINS-QC--CSLCQPGQKLVSDCT--EFTETECLPCGESEFLDTWNRETHCHQH 80
Query: 89 --CKPCLDCAVVNRFQKANCSATSDAICG-------------------DCLPGFYRKTKL 127
C P L R Q+ S T D IC C PGF K
Sbjct: 81 KYCDPNLGL----RVQQKGTSET-DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIA 135
Query: 128 VGFQDMECVPC 138
G D C PC
Sbjct: 136 TGVSDTICEPC 146
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.17
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 17 LVLLGYLSC-------KVTCESGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGED 69
L+LLG+LS K + G R + +G + C++C G +S+ C
Sbjct: 30 LLLLGFLSTTTAQPEQKASNLIGTYRHVD--RATGQVLTCDKCPAGTYVSEHCT--NTSL 85
Query: 70 AQCVTCRLHRF-KEDWGFQKCKPCLDCAVVNRFQKANCSATSDAICGDCLPGFYR 123
C +C + F + + G +KC C +K C+A +D C C PG ++
Sbjct: 86 RVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDREC-TCPPGMFQ 139
>gi|38490571 keratin associated protein 10-7 [Homo sapiens]
Length = 370
Score = 34.7 bits (78), Expect = 0.17
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 205 SLRSQDIQYN------GSELSCFDRPQLHEYAHRAC----CQCRRDSVQTCGPVRLLPSM 254
S+ S D+ Y GS SC D Q+ + C C C PV + S
Sbjct: 7 SVCSSDLSYGSRVCLPGSCDSCSDSWQVDDCPESCCEPPCCAPAPCLSLVCTPVSYVSSP 66
Query: 255 CCEEACSPNPATLGC 269
CC C P+P GC
Sbjct: 67 CCRVTCEPSPCQSGC 81
Score = 30.8 bits (68), Expect = 2.4
Identities = 37/181 (20%), Positives = 55/181 (30%), Gaps = 43/181 (23%)
Query: 106 CSATSDAICGDCLPGFYRKTKLVGFQDMECVPCGDPPPPYEPHCASKV-------NLVKI 158
C A + + C P V + C P P + C S + ++
Sbjct: 46 CCAPAPCLSLVCTP--------VSYVSSPCCRVTCEPSPCQSGCTSSCTPSCCQQSSCQL 97
Query: 159 ASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSEL 218
A ASSP A +C + + CV C S Q +
Sbjct: 98 ACCASSPCQQACCVPVC---CKTVCCKPVYCVPVCSGD----------SSCCQQSSCQSA 144
Query: 219 SCFDRPQLHEYAHRACCQ----------CRRDSVQTCGPVRLLPSMCCEEACSPNPATLG 268
C P CC+ C++ S +C + S CC+ C P+P G
Sbjct: 145 CCTSSPCQQACCVPICCKPVCSGISSSCCQQSSCVSC-----VSSPCCQAVCEPSPCQSG 199
Query: 269 C 269
C
Sbjct: 200 C 200
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 34.3 bits (77), Expect = 0.22
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 29/134 (21%)
Query: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKEC--GFGYGEDAQCVTCRLHRFKEDWGF----- 86
C F SG CVPC+ G S EC G GY Q T H K G+
Sbjct: 67 CNAGFFHTLSGECVPCDCNGN----SNECLDGSGYCVHCQRNTTGEHCEKCLDGYIGDSI 122
Query: 87 ----QKCKPCLDCAVVNRFQKA-NCSATSDAI------------CGDCLPGFYRKTKLVG 129
Q C+PC C + + A +C + A+ C C PG+Y L+G
Sbjct: 123 RGAPQFCQPC-PCPLPHLANFAESCYRKNGAVRCICNENYAGPNCERCAPGYYGNPLLIG 181
Query: 130 FQDMECVPCGDPPP 143
+C G+ P
Sbjct: 182 STCKKCDCSGNSDP 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,321,617
Number of Sequences: 37866
Number of extensions: 917104
Number of successful extensions: 3062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2854
Number of HSP's gapped (non-prelim): 290
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.