Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LAMC2 Sequence: fasta or formatted (1193aa) NCBI GI: 157419138
Description:

laminin, gamma 2 isoform a precursor

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [1111aa] laminin, gamma 2 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         96           3
 C cysteine            5.7         68           2
 D aspartate           6.2         74           2
 E glutamate           6.7         80           2
 F phenylalanine       2.4         29           1
 G glycine             8.2         98           3
 H histidine           2.1         25           1
 I isoleucine          2.8         34           1
 K lysine              4.4         53           1
 L leucine             9.0        107           3
 M methionine          1.8         22           2
 N asparagine          4.9         58           3
 P proline             4.6         55           2
 Q glutamine           6.5         77           2
 R arginine            6.9         82           2
 S serine              7.8         93           2
 T threonine           4.3         51           1
 V valine              4.6         55           2
 W tryptophan          0.5          6           1
 Y tyrosine            2.5         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin, gamma 2 isoform a precursor 
LAMC2                 0.933   laminin, gamma 2 isoform b precursor 
LAMC1                 0.338   laminin, gamma 1 precursor 
LAMC3                 0.221   laminin, gamma 3 precursor 
LAMA1                 0.136   laminin, alpha 1 precursor 
LAMA2                 0.118   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.118   laminin alpha 2 subunit isoform a precursor 
LAMA5                 0.113   laminin alpha 5 
LAMA3                 0.090   laminin alpha 3 subunit isoform 3 
LAMA3                 0.089   laminin alpha 3 subunit isoform 1 
HSPG2                 0.082   heparan sulfate proteoglycan 2 
LAMB1                 0.058   laminin, beta 1 precursor 
LAMB2                 0.055   laminin, beta 2 precursor 
LAMB4                 0.054   laminin, beta 4 
LAMB3                 0.046   laminin, beta 3 precursor 
LAMB3                 0.046   laminin, beta 3 precursor 
LAMB3                 0.046   laminin, beta 3 precursor 
LAMA4                 0.045   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.043   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.043   laminin, alpha 4 isoform 2 precursor 
LAMA3                 0.041   laminin alpha 3 subunit isoform 4 
LAMA3                 0.040   laminin alpha 3 subunit isoform 2 
MEGF9                 0.039   multiple EGF-like-domains 9 
USH2A                 0.033   usherin isoform B 
USH2A                 0.033   usherin isoform A 
NTN3                  0.033   netrin 3 
MEGF11                0.032   multiple EGF-like-domains 11 
NTN4                  0.032   netrin 4 
NTNG2                 0.029   netrin G2 
NTNG1                 0.029   netrin G1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press