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Search of human proteins with 23200023
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23200023 tumor necrosis factor receptor superfamily, member
25 isoform 3 precursor [Homo sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 820 0.0
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 800 0.0
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 754 0.0
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 673 0.0
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 409 e-114
gi|23200031 tumor necrosis factor receptor superfamily, member 2... 373 e-103
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 104 2e-22
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 73 5e-13
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 65 8e-11
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 65 8e-11
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 65 8e-11
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 59 9e-09
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 54 3e-07
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 54 3e-07
gi|224494026 tumor necrosis factor receptor superfamily, member ... 53 4e-07
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 49 7e-06
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 48 2e-05
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 48 2e-05
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 47 3e-05
gi|148743793 osteoprotegerin precursor [Homo sapiens] 45 8e-05
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 45 1e-04
gi|23238202 tumor necrosis factor receptor superfamily, member 1... 45 1e-04
gi|33356136 hypothetical protein LOC222223 isoform 2 [Homo sapiens] 45 1e-04
gi|218505750 hypothetical protein LOC222223 isoform 1 [Homo sapi... 45 1e-04
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 44 2e-04
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 44 3e-04
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 43 5e-04
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 42 0.001
gi|224494019 tumor necrosis factor receptor superfamily, member ... 42 0.001
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 42 0.001
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 820 bits (2119), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 181 TSTLGSCPERCAAVCGWRQNEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLV 240
TSTLGSCPERCAAVCGWRQNEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLV
Sbjct: 181 TSTLGSCPERCAAVCGWRQNEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLV 240
Query: 241 GNSWTPGYPETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYD 300
GNSWTPGYPETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYD
Sbjct: 241 GNSWTPGYPETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYD 300
Query: 301 VMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAAL 360
VMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAAL
Sbjct: 301 VMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAAL 360
Query: 361 ERMGLDGCVEDLRSRLQRGP 380
ERMGLDGCVEDLRSRLQRGP
Sbjct: 361 ERMGLDGCVEDLRSRLQRGP 380
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 800 bits (2066), Expect = 0.0
Identities = 379/417 (90%), Positives = 380/417 (91%), Gaps = 37/417 (8%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 181 TSTLGSCPERCAAVCGWRQ-------------------------------------NEAG 203
TSTLGSCPERCAAVCGWRQ +EAG
Sbjct: 181 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 240
Query: 204 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 263
MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
Sbjct: 241 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 300
Query: 264 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 323
DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
Sbjct: 301 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 360
Query: 324 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 380
IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
Sbjct: 361 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 417
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 754 bits (1948), Expect = 0.0
Identities = 366/426 (85%), Positives = 369/426 (86%), Gaps = 46/426 (10%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 181 T--STLGSCPERCA------AVCGWR---------------------------------- 198
T +L P +V G R
Sbjct: 181 TPPPSLAGAPWGAVQSAVPLSVAGGRVGVFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK 240
Query: 199 ----QNEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA 254
+EAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA
Sbjct: 241 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA 300
Query: 255 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV 314
LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV
Sbjct: 301 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV 360
Query: 315 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS 374
RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS
Sbjct: 361 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS 420
Query: 375 RLQRGP 380
RLQRGP
Sbjct: 421 RLQRGP 426
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 673 bits (1736), Expect = 0.0
Identities = 334/417 (80%), Positives = 335/417 (80%), Gaps = 82/417 (19%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 53
Query: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
ASQVALENCSAVADTRCGCKPG
Sbjct: 54 --------------------------------------ASQVALENCSAVADTRCGCKPG 75
Query: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 76 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 135
Query: 181 TSTLGSCPERCAAVCGWRQ-------------------------------------NEAG 203
TSTLGSCPERCAAVCGWRQ +EAG
Sbjct: 136 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 195
Query: 204 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 263
MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
Sbjct: 196 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 255
Query: 264 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 323
DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
Sbjct: 256 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 315
Query: 324 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 380
IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
Sbjct: 316 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 372
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 409 bits (1051), Expect = e-114
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 181 T 181
T
Sbjct: 181 T 181
>gi|23200031 tumor necrosis factor receptor superfamily, member 25
isoform 7 precursor [Homo sapiens]
Length = 234
Score = 373 bits (958), Expect = e-103
Identities = 181/185 (97%), Positives = 182/185 (98%)
Query: 196 GWRQNEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEAL 255
G +EAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEAL
Sbjct: 50 GCPADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEAL 109
Query: 256 CPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVR 315
CPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVR
Sbjct: 110 CPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVR 169
Query: 316 TLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSR 375
TLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSR
Sbjct: 170 TLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSR 229
Query: 376 LQRGP 380
LQRGP
Sbjct: 230 LQRGP 234
Score = 116 bits (290), Expect = 4e-26
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA 53
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 104 bits (259), Expect = 2e-22
Identities = 112/410 (27%), Positives = 156/410 (38%), Gaps = 70/410 (17%)
Query: 29 RSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSE 88
R C H + CC C G YL C P ++ C C +F A ENH
Sbjct: 40 RDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLR-H 98
Query: 89 CARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC--GA 146
C C C ++ QV + +C+ DT CGC+ Q S + F C C C G
Sbjct: 99 CLSCSKCRKEMGQVEISSCTVDRDTVCGCRKN-----QYRHYWSENLFQCFNCSLCLNGT 153
Query: 147 LH------RHTRLLCSR----RDTDCGTC-------------LPGFYEHGDGCVSCPTST 183
+H ++T C R+ +C +C LP E+ G T+
Sbjct: 154 VHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQI-ENVKGTEDSGTTV 212
Query: 184 L-------GSC-----------------PERCAAVCGWR--QNEAGMEALTPPPAT---H 214
L G C + + VCG + E +E T P
Sbjct: 213 LLPLVIFFGLCLLSLLFIGLMYRYQRWKSKLYSIVCGKSTPEKEGELEGTTTKPLAPNPS 272
Query: 215 LSPLDS-AHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSWDQLPSRALG- 272
SP TL P S + P + + + P + D + + AL
Sbjct: 273 FSPTPGFTPTLGFSPVPSSTFTSSSTYTPGDCPNFAAPRREVAPPYQGA-DPILATALAS 331
Query: 273 -PAAAPTLSPESPAGSPAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVE 330
P P E A P + P LY V++ VP RWKEFVR LGL + EI+ +E++
Sbjct: 332 DPIPNPLQKWEDSAHKPQSLDTDDPATLYAVVENVPPLRWKEFVRRLGLSDHEIDRLELQ 391
Query: 331 IGR-FRDQQYEMLKRWRQQQP---AGLGAVYAALERMGLDGCVEDLRSRL 376
GR R+ QY ML WR++ P A L + L M L GC+ED+ L
Sbjct: 392 NGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGCLEDIEEAL 441
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 72.8 bits (177), Expect = 5e-13
Identities = 55/192 (28%), Positives = 73/192 (38%), Gaps = 26/192 (13%)
Query: 15 LLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCP 74
L L LGA +P + +G CC C G+ +K C E G + C CP
Sbjct: 25 LYLTFLGAPCY----APALPSCKEDEYPVGSECCPKCSPGYRVKEACGELTG-TVCEPCP 79
Query: 75 QDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSS 134
T++A N S+C +CQ CD A NCS + CGC PG F C+
Sbjct: 80 PGTYIAHLNGL-SKCLQCQMCDPAMGLRASRNCSRTENAVCGCSPGHF-------CIVQD 131
Query: 135 PFYCQPCLDCGALHRHTRLL---CSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERC 191
+C C R+ +DT C C PG + P TL C +
Sbjct: 132 GDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFS--------PNGTLEECQHQ- 182
Query: 192 AAVCGWRQNEAG 203
C W +AG
Sbjct: 183 -TKCSWLVTKAG 193
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 65.5 bits (158), Expect = 8e-11
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 44 GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103
G FC + CP G CT C+ C + + H +S+C RC+ CDE
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144
NC+ +T+C CKP +F C S+ +C PC C
Sbjct: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 65.5 bits (158), Expect = 8e-11
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 44 GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103
G FC + CP G CT C+ C + + H +S+C RC+ CDE
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144
NC+ +T+C CKP +F C S+ +C PC C
Sbjct: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 65.5 bits (158), Expect = 8e-11
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 44 GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103
G FC + CP G CT C+ C + + H +S+C RC+ CDE
Sbjct: 56 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEV 115
Query: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144
NC+ +T+C CKP +F C S+ +C PC C
Sbjct: 116 EINCTRTQNTKCRCKPNFF-------CNSTVCEHCDPCTKC 149
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 58.5 bits (140), Expect = 9e-09
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
M R R + A LLL L AR Q + C + H + CC C G Y+ +
Sbjct: 1 MAPRARRRRPLFALLLLCALLARLQVALQIAP-PCTSEKHYEHLGRCCNKCEPGKYMSSK 59
Query: 61 CTEPCGNSTCLVCPQDTFL-AWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
CT +S CL C D +L +W + +C + CD + VA+ ++ RC C
Sbjct: 60 CT-TTSDSVCLPCGPDEYLDSW--NEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTA 116
Query: 120 G--WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY 170
G W +C+ + + C P L GA H L +DT C CL G++
Sbjct: 117 GYHWSQDCECCRRNTE----CAPGL--GAQHP----LQLNKDTVCKPCLAGYF 159
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 44 GLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVA 103
G CC+ C G +L C + + C C + ++H C C+ C+ S +
Sbjct: 36 GKLCCQMCEPGTFLVKDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHCN---SGLL 92
Query: 104 LENCSAVADTRCGCKPGWFVECQVSQCVSSSP 135
+ NC+ A+ C C+ GW +C+ +C P
Sbjct: 93 VRNCTITANAECACRNGW--QCRDKECTECDP 122
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHN--SECARCQACDEQASQVAL 104
CC CP G Y+ A C+ ++ C C ++++ H N + C C+ CD +
Sbjct: 58 CCSRCPPGTYVSAKCSR-IRDTVCATCAENSY---NEHWNYLTICQLCRPCDPVMGLEEI 113
Query: 105 ENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDC 144
C++ T+C C+PG F +C +C+ DC
Sbjct: 114 APCTSKRKTQCRCQPGMFCAAWALECT-----HCELLSDC 148
>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
isoform 2 precursor [Homo sapiens]
Length = 411
Score = 53.1 bits (126), Expect = 4e-07
Identities = 79/339 (23%), Positives = 121/339 (35%), Gaps = 63/339 (18%)
Query: 51 CPAGHYLKAPCTEPCGNSTCLVCP--QDTFLAWENHHNSECARCQACDEQASQVALENCS 108
CP GH++ + C+ C QD W + C RC CD + +V L C+
Sbjct: 81 CPPGHHISEDGRD------CISCKYGQDYSTHWNDL--LFCLRCTRCD--SGEVELSPCT 130
Query: 109 AVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPG 168
+T C C+ G F E SP C+ C R C R G C P
Sbjct: 131 TTRNTVCQCEEGTFRE-------EDSPEMCRKC----------RTGCPRGMVKVGDCTPW 173
Query: 169 F---YEHGDGCVSCPTSTLGSCPERCAAVCG---WRQ--------------NEAGMEALT 208
H + + + VC W++ + ++ +
Sbjct: 174 SDIECVHKESGIIIGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSS 233
Query: 209 PPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSWDQLPS 268
P + L+ ++L P E+ VQ P P L P + + P+
Sbjct: 234 QRPGAEDNVLNEIVSILQPTQVPEQEMEVQ------EPAEPTGVNMLSPGESEHLLE-PA 286
Query: 269 RALGPAAAPTLSPESPAGSPAMMLQPGPQLYD-VMDAVPARRWKEFVRTLGLREAEIEAV 327
A L P + G P L+ Q +D D VP W+ +R LGL + EI+
Sbjct: 287 EAERSQRRRLLVPANE-GDPTETLR---QCFDDFADLVPFDSWEPLMRKLGLMDNEIKVA 342
Query: 328 EVEIGRFRDQQYEMLKRW--RQQQPAGLGAVYAALERMG 364
+ E RD Y ML +W + + A + + ALE +G
Sbjct: 343 KAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALETLG 381
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 48.9 bits (115), Expect = 7e-06
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 11/137 (8%)
Query: 38 DFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDE 97
+++ + CC C G + K CT+ ++ C C T+ N C +C
Sbjct: 44 EYYDQTAQMCCSKCSPGQHAKVFCTKT-SDTVCDSCEDSTYTQLWNW----VPECLSCGS 98
Query: 98 QAS--QVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLC 155
+ S QV + C+ + C C+PGW+ C +S+ C P C R
Sbjct: 99 RCSSDQVETQACTREQNRICTCRPGWY--CALSK--QEGCRLCAPLRKCRPGFGVARPGT 154
Query: 156 SRRDTDCGTCLPGFYEH 172
D C C PG + +
Sbjct: 155 ETSDVVCKPCAPGTFSN 171
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
Query: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
Query: 164 TCLPGFYEH 172
C GF+ +
Sbjct: 145 PCPVGFFSN 153
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
Query: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
Query: 164 TCLPGFYEH 172
C GF+ +
Sbjct: 145 PCPVGFFSN 153
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 47.0 bits (110), Expect = 3e-05
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN- 106
C CPAG Y+ CT C CP TF H + +C C + +E
Sbjct: 67 CDKCPAGTYVSEHCTNT-SLRVCSSCPVGTF----TRHENGIEKCHDCSQPCPWPMIEKL 121
Query: 107 -CSAVADTRCGCKPGWF 122
C+A+ D C C PG F
Sbjct: 122 PCAALTDRECTCPPGMF 138
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 45.4 bits (106), Expect = 8e-05
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQ-ACDEQASQVALEN 106
C CP G YLK CT + C CP D + H + EC C C E Q +
Sbjct: 41 CDKCPPGTYLKQHCTAK-WKTVCAPCP-DHYYTDSWHTSDECLYCSPVCKE--LQYVKQE 96
Query: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCL 166
C+ + C CK G ++E + +C C + R+T C C
Sbjct: 97 CNRTHNRVCECKEGRYLEIE----------FCLKHRSCPPGFGVVQAGTPERNTVCKRCP 146
Query: 167 PGFYEH 172
GF+ +
Sbjct: 147 DGFFSN 152
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
Query: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 170
PCLDC ++R + CS D CG CLPGFY
Sbjct: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
>gi|23238202 tumor necrosis factor receptor superfamily, member 19
isoform 1 precursor [Homo sapiens]
Length = 423
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 86 NSECARCQACDEQASQVALENCSAVADTRCGCKPGW-----FVECQVSQCVSSSPFY-CQ 139
+ +C + + D + V C + C G+ V C++ + F C+
Sbjct: 31 SGDCRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQKCK 90
Query: 140 PCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 170
PCLDC ++R + CS D CG CLPGFY
Sbjct: 91 PCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
>gi|33356136 hypothetical protein LOC222223 isoform 2 [Homo sapiens]
Length = 789
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENC 107
C C G + P G+ C VCP++T+ EC RC+ D Q S+ C
Sbjct: 50 CFPCKPGTFSNKP-----GSFNCQVCPRNTY---SEKGAKECIRCKD-DSQFSEEGSSEC 100
Query: 108 SAVADTRCGCKPGWFVECQVSQCVSSSPFY--CQPCLDCGALHRHTRLLCSRRDTDCGTC 165
+ C K + + + + Y +P + L RL S DC C
Sbjct: 101 TERPP--CTTKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPC 158
Query: 166 LPGFYEHG-DGCVSCPTSTLGSCPERC 191
PGFY +G C CP T + C
Sbjct: 159 NPGFYNNGSSSCHPCPPGTFSDGTKEC 185
Score = 30.8 bits (68), Expect = 2.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSE-CARC 92
C CP GHY++ + C CP DT+L+ + E C C
Sbjct: 378 CVPCPPGHYIEKETNQ------CKECPPDTYLSIHQVYGKEACIPC 417
>gi|218505750 hypothetical protein LOC222223 isoform 1 [Homo
sapiens]
Length = 1029
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENC 107
C C G + P G+ C VCP++T+ EC RC+ D Q S+ C
Sbjct: 290 CFPCKPGTFSNKP-----GSFNCQVCPRNTY---SEKGAKECIRCKD-DSQFSEEGSSEC 340
Query: 108 SAVADTRCGCKPGWFVECQVSQCVSSSPFY--CQPCLDCGALHRHTRLLCSRRDTDCGTC 165
+ C K + + + + Y +P + L RL S DC C
Sbjct: 341 TERPP--CTTKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPC 398
Query: 166 LPGFYEHG-DGCVSCPTSTLGSCPERC 191
PGFY +G C CP T + C
Sbjct: 399 NPGFYNNGSSSCHPCPPGTFSDGTKEC 425
Score = 30.8 bits (68), Expect = 2.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 CRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSE-CARC 92
C CP GHY++ + C CP DT+L+ + E C C
Sbjct: 618 CVPCPPGHYIEKETNQ------CKECPPDTYLSIHQVYGKEACIPC 657
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 44.3 bits (103), Expect = 2e-04
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 27 GTRSPRCDCAGD--FHKKIGLFC----CRGCPAGHYLKAPCTEPCG--NSTCLVCPQDTF 78
G R RC+ D F +GLF C C + C + CL C
Sbjct: 780 GQRGRRCEVCDDGFFGDPLGLFGHPQPCHQCQCSGNVDPNAVGNCDPLSGHCLRCL---- 835
Query: 79 LAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYC 138
HN+ C+ C E AL A C C P V Q+ C
Sbjct: 836 ------HNTTGDHCEHCQEGFYGSALAPRPADKCMPCSCHPQGSVSEQMP---------C 880
Query: 139 QPCL-DCGALHRHTRLLCSRRDTDCGTCLPGFYE--HGDGCVSCPTSTLGSCPERC 191
P C L T DC C PGF++ G GC SC LGS ++C
Sbjct: 881 DPVTGQCSCLPHVTA-------RDCSRCYPGFFDLQPGRGCRSCKCHPLGSQEDQC 929
Score = 34.3 bits (77), Expect = 0.19
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 138 CQPCLDC---GALHRHT--RLLCSRRDT----DCGTCLPGFYEHGDG----CVSCPTSTL 184
CQPC DC G+LH C+ + T C CLPGF+ +G C P +L
Sbjct: 380 CQPC-DCQSAGSLHLQCDDTGTCACKPTVTGWKCDRCLPGFHSLSEGGCRPCTCNPAGSL 438
Query: 185 GSCPERCAAVCGWRQNEAG 203
+C R + C ++N G
Sbjct: 439 DTCDPR-SGRCPCKENVEG 456
Score = 31.6 bits (70), Expect = 1.2
Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 29/106 (27%)
Query: 115 CGCKPGWFVECQVSQCVSSSPFY------------CQPCL--DCGALHRHTRLLCSRRDT 160
C C G+ + C S +P Y C PC G +T + T
Sbjct: 673 CSCPTGYTGQF----CESCAPGYKREMPQGGPYASCVPCTCNQHGTCDPNTGICVCSHHT 728
Query: 161 D---CGTCLPGFYEH-----GDGCVSCPTSTLGSC---PERCAAVC 195
+ C CLPGFY + D C CP +C PE VC
Sbjct: 729 EGPSCERCLPGFYGNPFAGQADDCQPCPCPGQSACTTIPESREVVC 774
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 43.5 bits (101), Expect = 3e-04
Identities = 81/340 (23%), Positives = 111/340 (32%), Gaps = 84/340 (24%)
Query: 23 RAQGGTRSPRCDCAGDFHKKIGL--FCCRGCPAGHYLKAPCT----------------EP 64
+A G R DC I + CC C AG CT +P
Sbjct: 595 QADGSVSCKRTDCVDSCPHPIRIPGQCCPDCSAG------CTYTGRIFYNNETFPSVLDP 648
Query: 65 CGNSTCLV---------CPQDTFLAWENHHNSECAR-CQACDEQASQVALENCSAVAD-- 112
C + CL+ CP + H + EC C+ C+ + +VA + D
Sbjct: 649 CLSCICLLGSVACSPVDCP--ITCTYPFHPDGECCPVCRDCNYEGRKVANGQVFTLDDEP 706
Query: 113 -TRCGCKPGWF----VECQVS---------QCVSSSPFYCQPCLDCGALHRHTRLLCSRR 158
TRC C+ G V CQ + C SS P P + L H + S+
Sbjct: 707 CTRCTCQLGEVSCEKVPCQRACADPALLPGDCCSSCPDSLSPLEEKQGLSPHGNVAFSK- 765
Query: 159 DTDCGTCLPGFYEHGDGCVSCP--TSTLGSCPERCAAVCGWRQNEAGMEALTPPPA---- 212
G L G E C SCP + S P R N + L PA
Sbjct: 766 ---AGRSLHGDTEAPVNCSSCPGPPTASPSRPVLHLLQLLLRTNLMKTQTLPTSPAGAHG 822
Query: 213 THLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYP------------------ETQEA 254
H L T P +S ++ G S PG P + A
Sbjct: 823 PHSLALGLTATFPGEPGASPRLSP----GPSTPPGAPTLPLASPGAPQPPPVTPERSFSA 878
Query: 255 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQP 294
Q+ W LP L A+A ++ SP+ +P +L P
Sbjct: 879 SGAQIVSRWPPLPGTLLTEASALSMMDPSPSKTPITLLGP 918
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 42.7 bits (99), Expect = 5e-04
Identities = 58/198 (29%), Positives = 70/198 (35%), Gaps = 56/198 (28%)
Query: 26 GGTRSP---RCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPC------------GNSTC 70
GGT SP C C + GL C CP+G + C E C G+ +C
Sbjct: 455 GGTCSPVDGSCTCKEGWQ---GLDCTLPCPSGTW-GLNCNESCTCANGAACSPIDGSCSC 510
Query: 71 ----------LVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVAD---TRCG- 116
L CP TF + H +C+ CD +C +A RC
Sbjct: 511 TPGWLGDTCELPCPDGTFGLNCSEH-CDCSHADGCDPVTG-----HCCCLAGWTGIRCDS 564
Query: 117 -CKPG-WFVECQVSQCVSSSPFYCQP---CLDCGALHRHTRLLCSRRDTDCGTCLPGFYE 171
C PG W C VS C + C P +C R LC R C PGFY
Sbjct: 565 TCPPGRWGPNCSVS-CSCENGGSCSPEDGSCECAPGFRGP--LCQR------ICPPGFYG 615
Query: 172 HGDGCVS-CPTSTLGSCP 188
H GC CP S P
Sbjct: 616 H--GCAQPCPLCVHSSRP 631
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/194 (27%), Positives = 63/194 (32%), Gaps = 50/194 (25%)
Query: 33 CDCAGDFHKKIGLFCCRGCPAGHYLK-----------APCTEPCGNSTC----------L 71
C CA F +G C C AG Y C+ G+ TC L
Sbjct: 422 CTCAPGF---MGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTL 478
Query: 72 VCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCV 131
CP T W + N C C A+ CS + D C C PGW + C
Sbjct: 479 PCPSGT---WGLNCNESCT----CANGAA------CSPI-DGSCSCTPGWLGDTCELPCP 524
Query: 132 S-------SSPFYCQPCLDCGALHRHTRLLCSRRDTDC-GTCLPGFYEHGDGC-VSCPTS 182
S C C + H L C TC PG + G C VSC
Sbjct: 525 DGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRW--GPNCSVSCSCE 582
Query: 183 TLGSC-PERCAAVC 195
GSC PE + C
Sbjct: 583 NGGSCSPEDGSCEC 596
Score = 32.7 bits (73), Expect = 0.56
Identities = 45/188 (23%), Positives = 62/188 (32%), Gaps = 50/188 (26%)
Query: 32 RCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTF------------- 78
+C C + +G C CP G + C++ C C T
Sbjct: 289 QCHCTAGY---MGDRCQEECPFGSF-GFQCSQHCDCHNGGQCSPTTGACECEPGYKGPRC 344
Query: 79 ---LAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSP 135
L E H C CD + +C V C C+PGW S
Sbjct: 345 QERLCPEGLHGPGCTLPCPCDADNTI----SCHPVTGA-CTCQPGW------------SG 387
Query: 136 FYCQPCLDCGALHRHTRLLCS-RRDTDCG------TCLPGFYEHGDGC-VSCPTSTLGSC 187
+C G +L C+ + DC TC PGF G+ C VSC T G
Sbjct: 388 HHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFM--GEVCAVSCAAGTYG-- 443
Query: 188 PERCAAVC 195
C+++C
Sbjct: 444 -PNCSSIC 450
Score = 32.0 bits (71), Expect = 0.95
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 146 ALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTL--GSC--PERCAAVCGW 197
A R R + RR C PG+YE GD C+ T G C P+ C GW
Sbjct: 73 AYRRGLRTMYRRRSQ----CCPGYYESGDFCIPLCTEECVHGRCVSPDTCHCEPGW 124
Score = 30.0 bits (66), Expect = 3.6
Identities = 44/173 (25%), Positives = 57/173 (32%), Gaps = 62/173 (35%)
Query: 24 AQGGTRSP---RCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLA 80
A GT SP C C F IG C + CP G + A
Sbjct: 670 ANNGTCSPIDGSCQC---FPGWIGKDCSQACPPGFWGPA--------------------- 705
Query: 81 WENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQP 140
C +C AS CSA D C C PGW +C ++ F+ +
Sbjct: 706 --------CFHACSCHNGAS------CSA-EDGACHCTPGWTGLFCTQRCPAA--FFGK- 747
Query: 141 CLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGS-CPERCA 192
DCG R+ + C +H G +C T G C +RCA
Sbjct: 748 --DCG------RVCQCQNGASC--------DHISGKCTCRTGFTGQHCEQRCA 784
Score = 29.3 bits (64), Expect = 6.1
Identities = 51/195 (26%), Positives = 62/195 (31%), Gaps = 33/195 (16%)
Query: 8 CAAVAAALLLVLLGARA-QGGTRSPRCD--CAGDFHKKIGLFCCRGCPAGHYLKAPCTEP 64
C AL + GA G R RC+ CA H G C C H A C
Sbjct: 146 CQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTH---GKGCQLPCQCRH--GASCDPR 200
Query: 65 CGNSTCLVCPQDTFLAWEN-----HHNSECARCQACDEQASQVALENCSAVADTRCGCKP 119
G CL P T + E H + C C + C + C C P
Sbjct: 201 AGE--CLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGT------CHHITG-ECACPP 251
Query: 120 GWFVECQVSQCVSSSPFYCQPC-LDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGC-V 177
GW C + + Q C DC H C C C G+ GD C
Sbjct: 252 GWTGAVCAQPCPPGT--FGQNCSQDCPCHHGGQ---CDHVTGQC-HCTAGYM--GDRCQE 303
Query: 178 SCPTSTLG-SCPERC 191
CP + G C + C
Sbjct: 304 ECPFGSFGFQCSQHC 318
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 42.0 bits (97), Expect = 0.001
Identities = 51/212 (24%), Positives = 69/212 (32%), Gaps = 57/212 (26%)
Query: 48 CRGCPAGHYLKA---------PCTEPC-GNSTCLVCPQDTFLAWENHHNSECA-RCQACD 96
C C G+Y + PC PC G S+C V P+ + N RC+ CD
Sbjct: 751 CEKCSDGYYGDSTAGTSSDCQPC--PCPGGSSCAVVPKTKEVVCTNCPTGTTGKRCELCD 808
Query: 97 EQASQVALENCSAVADTR-CGCK----PGWFVECQ--VSQCV----SSSPFYCQPCLD-- 143
+ L V R C C P C +C+ +++ FYC C D
Sbjct: 809 DGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKDGF 868
Query: 144 -----------------------------CGALHRHTRLLCSRRDTDCGTCLPGFY--EH 172
C + L DCG C PGFY +
Sbjct: 869 FGNPLAPNPADKCKACNCNLYGTMKQQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQS 928
Query: 173 GDGCVSCPTSTLGSCPERCAAVCGWRQNEAGM 204
G GC C LGS +C G + + G+
Sbjct: 929 GQGCERCDCHALGSTNGQCDIRTGQCECQPGI 960
Score = 29.6 bits (65), Expect = 4.7
Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 37/180 (20%)
Query: 22 ARAQGGTRSPRCDCAG---DFHKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTF 78
A A+ + CDC G + + L+ G GH C + + C C ++ F
Sbjct: 331 ATAESASECLPCDCNGRSQECYFDPELYRSTG-HGGHCTN--CQDNTDGAHCERCRENFF 387
Query: 79 LAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFY- 137
N S C C ++Q C + RC CKPG +C P +
Sbjct: 388 RLGNNEACSSC-HCSPVGSLSTQ-----CDSYG--RCSCKPG----VMGDKCDRCQPGFH 435
Query: 138 ------CQPCL--DCGALHRHT----RLLC--SRRDTDCGTCLPGFY----EHGDGCVSC 179
C+PC G++ R +C + +C C PGF+ + GC C
Sbjct: 436 SLTEAGCRPCSCDPSGSIDECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPC 495
>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
isoform 1 precursor [Homo sapiens]
Length = 440
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 300 DVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRW--RQQQPAGLGAVY 357
D D VP W+ +R LGL + EI+ + E RD Y ML +W + + A + +
Sbjct: 344 DFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLL 403
Query: 358 AALERMG 364
ALE +G
Sbjct: 404 DALETLG 410
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/238 (23%), Positives = 84/238 (35%), Gaps = 54/238 (22%)
Query: 10 AVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAPCTEPCGNST 69
A + + V+LG + + RC + C CPA P P
Sbjct: 1021 APSTPMTSVILGTTTTSRSSTERCPPNARYES------C-ACPASCKSPRPSCGPLCREG 1073
Query: 70 CLVCPQDTFLAWENHHNSECARCQACD--------EQASQVALENCSAVADTRCGCKPGW 121
C+ P FL +NH C + +C+ E ++ NC+ C C PG
Sbjct: 1074 CVCNPG--FLFSDNH----CIQASSCNCFYNNDYYEPGAEWFSPNCTE----HCRCWPGS 1123
Query: 122 FVECQVSQC-------VSSSPFYCQP------CLDCGALH------RHTRLL--CSR-RD 159
VECQ+SQC + + + C P CL G H RH + C+
Sbjct: 1124 RVECQISQCGTHTVCQLKNGQYGCHPYAGTATCLVYGDPHYVTFDGRHFGFMGKCTYILA 1183
Query: 160 TDCGTCLPGFY-------EHGDGCVSCPTSTLGSCPERCAAVCGWRQNEAGMEALTPP 210
CG F+ E G VSC + + PE + R+ G + +T P
Sbjct: 1184 QPCGNSTDPFFRVTAKNEEQGQEGVSCLSKVYVTLPESTVTLLKGRRTLVGGQQVTLP 1241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,128,994
Number of Sequences: 37866
Number of extensions: 1082395
Number of successful extensions: 4875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 4480
Number of HSP's gapped (non-prelim): 617
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.