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Search of human proteins with 11321607
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11321607 thyroid hormone receptor interactor 13 [Homo
sapiens]
(432 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens] 846 0.0
gi|6005942 valosin-containing protein [Homo sapiens] 72 1e-12
gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens] 70 4e-12
gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens] 69 6e-12
gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens] 66 7e-11
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 65 1e-10
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 65 1e-10
gi|156564401 vesicle-fusing ATPase [Homo sapiens] 63 5e-10
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 62 8e-10
gi|157671927 spermatogenesis associated 5 [Homo sapiens] 62 1e-09
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] 62 1e-09
gi|4505725 peroxin1 [Homo sapiens] 61 2e-09
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 60 5e-09
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 60 5e-09
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens] 60 5e-09
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 59 1e-08
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 58 1e-08
gi|31742536 fidgetin-like 1 [Homo sapiens] 57 2e-08
gi|112789543 fidgetin-like 1 [Homo sapiens] 57 2e-08
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens] 57 3e-08
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 57 4e-08
gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit ... 56 7e-08
gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo sapi... 56 7e-08
gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens] 56 7e-08
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens] 55 1e-07
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens] 54 2e-07
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 54 3e-07
gi|40806170 spastin isoform 2 [Homo sapiens] 53 6e-07
gi|11875211 spastin isoform 1 [Homo sapiens] 53 6e-07
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 47 3e-05
>gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]
Length = 432
Score = 846 bits (2186), Expect = 0.0
Identities = 432/432 (100%), Positives = 432/432 (100%)
Query: 1 MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTE 60
MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTE
Sbjct: 1 MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTE 60
Query: 61 FDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENII 120
FDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENII
Sbjct: 61 FDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENII 120
Query: 121 AANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGP 180
AANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGP
Sbjct: 121 AANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGP 180
Query: 181 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI 240
PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI
Sbjct: 181 PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI 240
Query: 241 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN 300
DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN
Sbjct: 241 DDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN 300
Query: 301 ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG 360
ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG
Sbjct: 301 ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG 360
Query: 361 FIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDK 420
FIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDK
Sbjct: 361 FIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDK 420
Query: 421 QFEERKKLAAYI 432
QFEERKKLAAYI
Sbjct: 421 QFEERKKLAAYI 432
>gi|6005942 valosin-containing protein [Homo sapiens]
Length = 806
Score = 71.6 bits (174), Expect = 1e-12
Identities = 71/267 (26%), Positives = 116/267 (43%), Gaps = 35/267 (13%)
Query: 71 QSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAA 130
+ + +ID E + D++ ++ A T+ + L++ PS+ L E +
Sbjct: 425 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA--LRETVVEVPQVT------- 475
Query: 131 EFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCK 190
W+ + +VK L + V + DK + + T ++ VL +GPPG GKT L K
Sbjct: 476 -----WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAK 529
Query: 191 ALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVL 250
A+A + I I L + WF ES V ++F K + + A +
Sbjct: 530 AIANEC---------QANFISIKGPELLTMWFGESEANVREIFDKAR-----QAAPCVLF 575
Query: 251 IDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV 310
DE++S+ AR G A RV+N +LT++D + NV I+ +N + ID A +
Sbjct: 576 FDELDSIAKARGG-NIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634
Query: 311 DRADIKQYIGPP-----SAAAIFKIYL 332
+ Q I P S AI K L
Sbjct: 635 RPGRLDQLIYIPLPDEKSRVAILKANL 661
Score = 62.0 bits (149), Expect = 1e-09
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R +LL+GPPGTGKT + +A+A + IN + SK ES + K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSN 292
F++ +K+A + IDE++++ R E R+V+ +LT +D +K+ ++
Sbjct: 290 FEEA-----EKNAPAIIFIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRAH 340
Query: 293 VVILTTSNITEKIDVAF--VDRADIKQYIGPPSAAAIFKI 330
V+++ +N ID A R D + IG P A +I
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
>gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]
Length = 444
Score = 70.1 bits (170), Expect = 4e-12
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 21/164 (12%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R +LL GPPGTGK+ L KA+A + I+S L SKW ES KLV +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVA--------TEANNSTFFSISSSDLVSKWLGESEKLVKNL 219
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQI-KRHS 291
FQ + ++K +++F IDE++SL +R+ E A R+ L Q+ + +
Sbjct: 220 FQLAR---ENKPSIIF--IDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDND 270
Query: 292 NVVILTTSNITEKIDVAFVDRADIKQYI---GPPSAAAIFKIYL 332
+++L +NI +D A R + + YI P + AA+FK++L
Sbjct: 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL 314
>gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens]
Length = 437
Score = 69.3 bits (168), Expect = 6e-12
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 44/214 (20%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R +LL GPPGTGK+ L KA+A + ++S L SKW ES KLV +
Sbjct: 161 RGILLFGPPGTGKSYLAKAVA--------TEANNSTFFSVSSSDLMSKWLGESEKLVKNL 212
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQI-KRHS 291
F+ + K +++F IDEV+SL +RN E A R+ L Q+ + +
Sbjct: 213 FELAR---QHKPSIIF--IDEVDSLCGSRNE----NESEAARRIKTEFLVQMQGVGNNND 263
Query: 292 NVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLL 351
++L +NI +D A R + + YI P AA R Q+
Sbjct: 264 GTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAA--------------------RAQMF 303
Query: 352 TLRELEMIGFIENNVSKLSLLLNDISRKSEGLSG 385
L +G +N++ + +++++RK+EG SG
Sbjct: 304 RLH----LGSTPHNLTDAN--IHELARKTEGYSG 331
>gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens]
Length = 466
Score = 65.9 bits (159), Expect = 7e-11
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
+LL+GPPGTGKT L KA+A + I++ ++ SKW +S KLV +F+
Sbjct: 218 LLLYGPPGTGKTLLAKAVATECKT---------TFFNISASTIVSKWRGDSEKLVRVLFE 268
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVV 294
+ A + +DE+ES+ + R +G E ++R+ +L Q+D + R ++V
Sbjct: 269 -----LARYHAPSTIFLDELESVMSQRGTA-SGGEHEGSLRMKTELLVQMDGLARSEDLV 322
Query: 295 -ILTTSNITEKIDVAFVDRADIKQYIGPPSAAA 326
+L SN+ ++D A + R + + + PS A
Sbjct: 323 FVLAASNLPWELDCAMLRRLEKRILVDLPSREA 355
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 65.1 bits (157), Expect = 1e-10
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 102 LNEDGPSSENLEE----ETENIIAANHWVLPAAEFHGL-------WDSLVYDVEVKSHLL 150
L + P SE + E + I A V P+A+ G W + +++ L
Sbjct: 429 LRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELT 488
Query: 151 DYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLI 210
++ + D+ L+T VLL GPPG GKT L KA+A + + I
Sbjct: 489 MAILAPVRNPDQFKALGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLNF---------I 538
Query: 211 EINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEP 270
+ L + + ES + V ++FQ+ ++ A + DEV++L R+ G
Sbjct: 539 SVKGPELLNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGA-- 591
Query: 271 SDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAA 325
++RVVN +LT++D ++ V I+ +N + ID A + R D ++G P A
Sbjct: 592 --SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 646
Score = 49.3 bits (116), Expect = 7e-06
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VLLHGPPG GKT L A+A +L + ++++ + + S ES + + ++
Sbjct: 193 RGVLLHGPPGCGKTLLAHAIAGELDL---------PILKVAAPEIVSGVSGESEQKLREL 243
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKR--- 289
F++ +A + IDE++++T R E R+V +LT +D +
Sbjct: 244 FEQAV-----SNAPCIIFIDEIDAITPKREVASKDMER----RIVAQLLTCMDDLNNVAA 294
Query: 290 HSNVVILTTSNITEKIDVAF--VDRADIKQYIGPPSAAAIFKIYLSCLEEL 338
+ V+++ +N + +D A R D + +G P A+ +I + +L
Sbjct: 295 TARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKL 345
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 65.1 bits (157), Expect = 1e-10
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 102 LNEDGPSSENLEE----ETENIIAANHWVLPAAEFHGL-------WDSLVYDVEVKSHLL 150
L + P SE + E + I A V P+A+ G W + +++ L
Sbjct: 535 LRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELT 594
Query: 151 DYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLI 210
++ + D+ L+T VLL GPPG GKT L KA+A + + I
Sbjct: 595 MAILAPVRNPDQFKALGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLNF---------I 644
Query: 211 EINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEP 270
+ L + + ES + V ++FQ+ ++ A + DEV++L R+ G
Sbjct: 645 SVKGPELLNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGA-- 697
Query: 271 SDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAA 325
++RVVN +LT++D ++ V I+ +N + ID A + R D ++G P A
Sbjct: 698 --SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 752
Score = 49.3 bits (116), Expect = 7e-06
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VLLHGPPG GKT L A+A +L + ++++ + + S ES + + ++
Sbjct: 299 RGVLLHGPPGCGKTLLAHAIAGELDL---------PILKVAAPEIVSGVSGESEQKLREL 349
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKR--- 289
F++ +A + IDE++++T R E R+V +LT +D +
Sbjct: 350 FEQAV-----SNAPCIIFIDEIDAITPKREVASKDMER----RIVAQLLTCMDDLNNVAA 400
Query: 290 HSNVVILTTSNITEKIDVAF--VDRADIKQYIGPPSAAAIFKIYLSCLEEL 338
+ V+++ +N + +D A R D + +G P A+ +I + +L
Sbjct: 401 TARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKL 451
>gi|156564401 vesicle-fusing ATPase [Homo sapiens]
Length = 744
Score = 63.2 bits (152), Expect = 5e-10
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMF- 233
+LL+GPPG GKT L + + + L R + +N + +K+ ES + K+F
Sbjct: 256 ILLYGPPGCGKTLLARQIGKMLNAR--------EPKVVNGPEILNKYVGESEANIRKLFA 307
Query: 234 --QKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS 291
++ Q + L ++ DE++++ R + T D VVN +L++ID +++ +
Sbjct: 308 DAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT--VVNQLLSKIDGVEQLN 365
Query: 292 NVVILTTSNITEKIDVAFV--DRADIKQYIGPP 322
N++++ +N + ID A + R ++K IG P
Sbjct: 366 NILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 398
Score = 30.8 bits (68), Expect = 2.5
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
VLL GPP +GKT+L +A++ ++I FSE+ K Q
Sbjct: 539 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMI----------GFSETAKC-----Q 583
Query: 235 KIQDLIDD--KDALVFVLIDEVESL 257
++ + DD K L V++D++E L
Sbjct: 584 AMKKIFDDAYKSQLSCVVVDDIERL 608
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 62.4 bits (150), Expect = 8e-10
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMF- 233
+LL+GPPG GKT L + + + L R + +N + +K+ ES + K+F
Sbjct: 329 ILLYGPPGCGKTLLARQIGKMLNAR--------EPKVVNGPEILNKYVGESEANIRKLFA 380
Query: 234 --QKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS 291
++ Q + L ++ DE++++ R + T D VVN +L++ID +++ +
Sbjct: 381 DAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT--VVNQLLSKIDGMEQLN 438
Query: 292 NVVILTTSNITEKIDVAFV--DRADIKQYIGPP 322
N++++ +N + ID A + R ++K IG P
Sbjct: 439 NILVIGMTNRPDLIDEALLRPGRLEVKMEIGLP 471
>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
Length = 893
Score = 62.0 bits (149), Expect = 1e-09
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 21/161 (13%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
VLL+GPPG KT + KALA + + + I L +K+ ES + V + F+
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGL---------NFLAIKGPELMNKYVGESERAVRETFR 714
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVV 294
K + + A + DE+++L R + +D RV+ +LT++D I++ +V
Sbjct: 715 KARAV-----APSIIFFDELDALAVERGSSLGAGNVAD--RVLAQLLTEMDGIEQLKDVT 767
Query: 295 ILTTSNITEKIDVAFV--DRADIKQYIGPPSAAA---IFKI 330
IL +N ++ID A + R D Y+ P AA IFK+
Sbjct: 768 ILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKL 808
Score = 55.8 bits (133), Expect = 7e-08
Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 41/252 (16%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VLL+GPPGTGKT + +A+A ++ +S IN + SK++ G+ K+
Sbjct: 388 RGVLLYGPPGTGKTMIARAVANEVGAYVS---------VINGPEIISKFY---GETEAKL 435
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQI---KR 289
Q + +++F IDE+++L R + E RVV ++LT +D I
Sbjct: 436 RQIFAEATLRHPSIIF--IDELDALCPKREGAQNEVEK----RVVASLLTLMDGIGSEVS 489
Query: 290 HSNVVILTTSNITEKIDVAF--VDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPR 347
V++L +N +D A R D + IG P+A + L L++L++
Sbjct: 490 EGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNA----QDRLDILQKLLR-----RV 540
Query: 348 QQLLTLRELEMIGFIENNV--SKLSLLLNDISRKSEGLSG--RVLRKLPFLAHALYVQAP 403
LLT EL + + + L +L N+ GL R+L+K P L
Sbjct: 541 PHLLTEAELLQLANSAHGYVGADLKVLCNE-----AGLCALRRILKKQPNLPDVKVAGLV 595
Query: 404 TVTIEGFLQALS 415
+T++ FLQA++
Sbjct: 596 KITLKDFLQAMN 607
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens]
Length = 491
Score = 61.6 bits (148), Expect = 1e-09
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 59/260 (22%)
Query: 136 WDSLVYDVEVKSHLLDYVMTTLLFSD--KNVNSNLITWNRVVLLHGPPGTGKTSLCKALA 193
WD + VE K L + V+ + + K + W V+++ GPPGTGKT L KA+A
Sbjct: 208 WDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRR---PWKGVLMV-GPPGTGKTLLAKAVA 263
Query: 194 QKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDE 253
+ ++S +L SK+ ES KLV +F+ + A +F IDE
Sbjct: 264 TECKT---------TFFNVSSSTLTSKYRGESEKLVRLLFEMARFY---SPATIF--IDE 309
Query: 254 VESLTAARNACRAGTEPSDAIRVVNA-VLTQIDQIKRHSN-------VVILTTSNITEKI 305
++S+ + R +E +A R V A +L Q+D + S V++L +N I
Sbjct: 310 IDSICSRRGT----SEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDI 365
Query: 306 DVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENN 365
D A R + + YI PSA EEL++ ++LRELE+ ++
Sbjct: 366 DEALRRRLEKRIYIPLPSAKG--------REELLR----------ISLRELELADDVD-- 405
Query: 366 VSKLSLLLNDISRKSEGLSG 385
L I+ EG SG
Sbjct: 406 -------LASIAENMEGYSG 418
>gi|4505725 peroxin1 [Homo sapiens]
Length = 1283
Score = 61.2 bits (147), Expect = 2e-09
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 136 WDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQK 195
WD + EV+ L+D + + + N I +LL+GPPGTGKT L +A++
Sbjct: 839 WDKIGGLHEVRQILMDTIQLPAKYPELFANLP-IRQRTGILLYGPPGTGKTLLAGVIARE 897
Query: 196 LTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVE 255
SR + I + L SK+ S + V +F + Q K ++F DE E
Sbjct: 898 ------SRMNF---ISVKGPELLSKYIGASEQAVRDIFIRAQAA---KPCILF--FDEFE 943
Query: 256 SLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRA 313
S+ R G RVVN +LTQ+D ++ V +L ++ + ID A + R
Sbjct: 944 SIAPRRGHDNTGVTD----RVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRL 999
Query: 314 DIKQYIGPPSAAAIFKI 330
D Y PP + +I
Sbjct: 1000 DKCVYCPPPDQVSRLEI 1016
Score = 28.9 bits (63), Expect = 9.5
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 172 NRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTK 231
N +LL G G+GK++L KA+ ++ +L + ++ +L K K +
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVE-----RVDCKALRGKRLENIQKTLEV 646
Query: 232 MFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAI---RVVNAVLTQIDQ-I 287
F + + VL+D+++ L A A DA+ R+ +A+ I + I
Sbjct: 647 AFSEAVWMQPS-----VVLLDDLD-LIAGLPAVPEHEHSPDAVQSQRLAHALNDMIKEFI 700
Query: 288 KRHSNVVILTTSNITEKIDVAFVDRADIK-----QYIGPPSAAAIFKIYLSCLEELMKCQ 342
S V ++ TS + + V + Q+I PP+ +I + ++ + C
Sbjct: 701 SMGSLVALIATSQSQQSLHPLLVSAQGVHIFQCVQHIQPPNQEQRCEILCNVIKNKLDCD 760
Query: 343 I 343
I
Sbjct: 761 I 761
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 59.7 bits (143), Expect = 5e-09
Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 57/259 (22%)
Query: 136 WDSLVYDVEVKSHLLDYVMTTLLFSD--KNVNSNLITWNRVVLLHGPPGTGKTSLCKALA 193
WD + E K L + V+ + D K + W V+++ GPPGTGKT L KA+A
Sbjct: 207 WDDIADLEEAKKLLREAVVLPMWMPDFFKGIRR---PWKGVLMV-GPPGTGKTMLAKAVA 262
Query: 194 QKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDE 253
+ ++S +L SK+ ES KLV +F+ + A + IDE
Sbjct: 263 TECGT---------TFFNVSSSTLTSKYRGESEKLVRLLFEMARFY-----APTTIFIDE 308
Query: 254 VESLTAARNACRAGTEPSDAIRVVNAVLTQIDQI-------KRHSNVVILTTSNITEKID 306
++S+ + R E + RV + +L Q+D + V++L +N ID
Sbjct: 309 IDSICSRRG---TSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDID 365
Query: 307 VAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNV 366
A R + + YI P+A EL+K + LRE+E+ I+
Sbjct: 366 EALRRRLEKRIYIPLPTAKG--------RAELLK----------INLREVELDPDIQ--- 404
Query: 367 SKLSLLLNDISRKSEGLSG 385
L DI+ K EG SG
Sbjct: 405 ------LEDIAEKIEGYSG 417
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 59.7 bits (143), Expect = 5e-09
Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 57/259 (22%)
Query: 136 WDSLVYDVEVKSHLLDYVMTTLLFSD--KNVNSNLITWNRVVLLHGPPGTGKTSLCKALA 193
WD + E K L + V+ + D K + W V+++ GPPGTGKT L KA+A
Sbjct: 207 WDDIADLEEAKKLLREAVVLPMWMPDFFKGIRR---PWKGVLMV-GPPGTGKTMLAKAVA 262
Query: 194 QKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDE 253
+ ++S +L SK+ ES KLV +F+ + A + IDE
Sbjct: 263 TECGT---------TFFNVSSSTLTSKYRGESEKLVRLLFEMARFY-----APTTIFIDE 308
Query: 254 VESLTAARNACRAGTEPSDAIRVVNAVLTQIDQI-------KRHSNVVILTTSNITEKID 306
++S+ + R E + RV + +L Q+D + V++L +N ID
Sbjct: 309 IDSICSRRG---TSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDID 365
Query: 307 VAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNV 366
A R + + YI P+A EL+K + LRE+E+ I+
Sbjct: 366 EALRRRLEKRIYIPLPTAKG--------RAELLK----------INLREVELDPDIQ--- 404
Query: 367 SKLSLLLNDISRKSEGLSG 385
L DI+ K EG SG
Sbjct: 405 ------LEDIAEKIEGYSG 417
>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
Length = 361
Score = 59.7 bits (143), Expect = 5e-09
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 115 ETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRV 174
E E IAA H V P H W + +V + L D V+ + NS L+ +
Sbjct: 71 EYEMSIAA-HLVDPL-NMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKG 128
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
VLL+GPPG GKT + KA A++ R I + +L KW+ ES KL +F
Sbjct: 129 VLLYGPPGCGKTLIAKATAKEAGCR---------FINLQPSTLTDKWYGESQKLAAAVFS 179
Query: 235 ---KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS 291
K+Q I + IDE++S RN + E + ++ L
Sbjct: 180 LAIKLQPSI--------IFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSC 229
Query: 292 NVVILTTSNITEKIDVAFVDRADIKQYIGPPS---AAAIFKIYL 332
V+++ +N + +D A + R + +I P+ AI K+ L
Sbjct: 230 QVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLIL 273
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
V+L+GPPGTGKT L KA+A + + + + L K+ + KLV ++F+
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTS---------ATFLRVVGSELIQKYLGDGPKLVRELFR 272
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVV 294
+ ++ A V IDE++++ R +G E + R + +L Q+D +V
Sbjct: 273 -----VAEEHAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLDGFDSRGDVK 326
Query: 295 ILTTSNITEKIDVAFVDRADIKQYIGPP-----SAAAIFKIYLS 333
++ +N E +D A + I + I P + IF+I+ S
Sbjct: 327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTS 370
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 58.2 bits (139), Expect = 1e-08
Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 136 WDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQK 195
W+ + +VK L + L F + V L T + VLL+GPPG KT+L +ALA
Sbjct: 463 WEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGL-TQPKGVLLYGPPGCAKTTLVRALATS 521
Query: 196 LTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVE 255
+ + ++ LFS + +S K+++++F++ + A++F +DE++
Sbjct: 522 C---------HCSFVSVSGADLFSPFVGDSEKVLSQIFRQAR---ASTPAILF--LDEID 567
Query: 256 SLTAARNACRAGTEPSDAIRVVNAVLTQIDQI------KRHS-------------NVVIL 296
S+ AR+A + G + + RV++ +L ++D + +R S +V+I+
Sbjct: 568 SILGARSASKTGCDVQE--RVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMII 625
Query: 297 TTSNITEKIDVAFV--DRADIKQYIGPPSAAAIFKIYLSCLEEL 338
+N + +D A + R D YI PP I C + +
Sbjct: 626 AATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTM 669
Score = 53.1 bits (126), Expect = 5e-07
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 19/153 (12%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VLL GPPG GKT L +A+A R +L+ +++ +L E+ + V ++
Sbjct: 235 RGVLLAGPPGVGKTQLVRAVA---------REAGAELLAVSAPALQGSRPGETEENVRRV 285
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSN 292
FQ+ ++L +L+F +DE+++L R G+ ++ RVV VLT +D
Sbjct: 286 FQRARELASRGPSLLF--LDEMDALCPQR-----GSRAPES-RVVAQVLTLLDGASGDRE 337
Query: 293 VVILTTSNITEKIDVAF--VDRADIKQYIGPPS 323
VV++ +N + +D A R D + IG P+
Sbjct: 338 VVVVGATNRPDALDPALRRPGRFDREVVIGTPT 370
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
+LL GPPGTGKT + K +A + S I++ SL SKW E K+V +F
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFS---------ISASSLTSKWVGEGEKMVRALFA 487
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS--N 292
+ + A++F IDE++SL + R E + R+ L Q+D S
Sbjct: 488 VAR---CQQPAVIF--IDEIDSLLSQ----RGDGEHESSRRIKTEFLVQLDGATTSSEDR 538
Query: 293 VVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKC 341
++++ +N ++ID A R + YI P A+A +I ++ + + C
Sbjct: 539 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC 587
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
+LL GPPGTGKT + K +A + S I++ SL SKW E K+V +F
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFS---------ISASSLTSKWVGEGEKMVRALFA 487
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHS--N 292
+ + A++F IDE++SL + R E + R+ L Q+D S
Sbjct: 488 VAR---CQQPAVIF--IDEIDSLLSQ----RGDGEHESSRRIKTEFLVQLDGATTSSEDR 538
Query: 293 VVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKC 341
++++ +N ++ID A R + YI P A+A +I ++ + + C
Sbjct: 539 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC 587
>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
Length = 406
Score = 57.0 bits (136), Expect = 3e-08
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
VLL+GPPGTGKT L +A+A I ++ L K+ E ++V ++F
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDC---------TFIRVSGSELVQKFIGEGARMVRELF- 235
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVV 294
++ + A + +DE++S+ ++R +G + S+ R + +L Q+D + N+
Sbjct: 236 ----VMAREHAPSIIFMDEIDSIGSSRLEGGSGGD-SEVQRTMLELLNQLDGFEATKNIK 290
Query: 295 ILTTSNITEKIDVAFV--DRADIKQYIGPPSAAA---IFKIY 331
++ +N + +D A + R D K PP+ A I KI+
Sbjct: 291 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIH 332
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 56.6 bits (135), Expect = 4e-08
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 176 LLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQK 235
+L GPPGTGKT L KA A + + I ++ + V +F
Sbjct: 345 ILTGPPGTGKTLLAKATAGEANV---------PFITVSGSEFLEMFVGVGPARVRDLF-- 393
Query: 236 IQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVI 295
+ K+A + IDE++++ R G + S+ +N +L ++D +NVVI
Sbjct: 394 ---ALARKNAPCILFIDEIDAVGRKRGRGNFGGQ-SEQENTLNQLLVEMDGFNTTTNVVI 449
Query: 296 LTTSNITEKIDVAFV--DRADIKQYIGPP---SAAAIFKIYLSCLE 336
L +N + +D A + R D + +IGPP A+IFK++L L+
Sbjct: 450 LAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 495
>gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit 4
[Homo sapiens]
Length = 414
Score = 55.8 bits (133), Expect = 7e-08
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VL++GPPG GKT L KA+A T I + K+ E ++V +
Sbjct: 196 RGVLMYGPPGCGKTMLAKAVAHHTT---------AAFIRVVGSEFVQKYLGEGPRMVRDV 246
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSN 292
F+ + ++A + IDE++++ R + G + + R++ +L Q+D ++ N
Sbjct: 247 FR-----LAKENAPAIIFIDEIDAIATKRFDAQTGAD-REVQRILLELLNQMDGFDQNVN 300
Query: 293 VVILTTSNITEKIDVAFV 310
V ++ +N + +D A +
Sbjct: 301 VKVIMATNRADTLDPALL 318
>gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo
sapiens]
Length = 387
Score = 55.8 bits (133), Expect = 7e-08
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VL++GPPG GKT L KA+A T I + K+ E ++V +
Sbjct: 169 RGVLMYGPPGCGKTMLAKAVAHHTT---------AAFIRVVGSEFVQKYLGEGPRMVRDV 219
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSN 292
F+ + ++A + IDE++++ R + G + + R++ +L Q+D ++ N
Sbjct: 220 FR-----LAKENAPAIIFIDEIDAIATKRFDAQTGAD-REVQRILLELLNQMDGFDQNVN 273
Query: 293 VVILTTSNITEKIDVAFV 310
V ++ +N + +D A +
Sbjct: 274 VKVIMATNRADTLDPALL 291
>gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens]
Length = 418
Score = 55.8 bits (133), Expect = 7e-08
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R VL++GPPG GKT L KA+A T I + K+ E ++V +
Sbjct: 200 RGVLMYGPPGCGKTMLAKAVAHHTT---------AAFIRVVGSEFVQKYLGEGPRMVRDV 250
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSN 292
F+ + ++A + IDE++++ R + G + + R++ +L Q+D ++ N
Sbjct: 251 FR-----LAKENAPAIIFIDEIDAIATKRFDAQTGAD-REVQRILLELLNQMDGFDQNVN 304
Query: 293 VVILTTSNITEKIDVAFV 310
V ++ +N + +D A +
Sbjct: 305 VKVIMATNRADTLDPALL 322
>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
Length = 403
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 176 LLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQK 235
LL+GPPGTGKT L +A+A +L +++ S S+ K+ ES +L+ +MF
Sbjct: 185 LLYGPPGTGKTLLARAVASQLDC---------NFLKVVSSSIVDKYIGESARLIREMFNY 235
Query: 236 IQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAI-RVVNAVLTQIDQIKRHSNVV 294
+ D + ++F +DE++++ R + GT I R + +L Q+D V
Sbjct: 236 AR---DHQPCIIF--MDEIDAIGGRRFS--EGTSADREIQRTLMELLNQMDGFDTLHRVK 288
Query: 295 ILTTSNITEKIDVAFV--DRADIKQYIGPPSAAA---IFKIY 331
++ +N + +D A + R D K +I P+ A I KI+
Sbjct: 289 MIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIH 330
>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
Length = 433
Score = 54.3 bits (129), Expect = 2e-07
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 149 LLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQ 208
L + V T LL ++ VN I + VLL GPPGTGKT +A+A +
Sbjct: 187 LREVVETPLLHPERFVNLG-IEPPKGVLLFGPPGTGKTLCARAVANRTD---------AC 236
Query: 209 LIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGT 268
I + L K+ E ++V ++F+ + K L+F DE++++ AR AG
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMAR---TKKACLIF--FDEIDAIGGARFDDGAGG 291
Query: 269 EPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAAA 326
+ ++ R + ++ Q+D N+ +L +N + +D A + R D K P
Sbjct: 292 D-NEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEG 350
Query: 327 ---IFKIY 331
IFKI+
Sbjct: 351 RTHIFKIH 358
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 53.9 bits (128), Expect = 3e-07
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 175 VLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQ 234
+LLHGPPGTGKT L KA+A + ++ + + L + + +S + V ++F
Sbjct: 740 LLLHGPPGTGKTLLAKAVATECSL---------TFLSVKGPELINMYVGQSEENVREVFA 790
Query: 235 KIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVV 294
+ + A + DE++SL +R R+G RVV+ +L ++D + +V
Sbjct: 791 RAR-----AAAPCIIFFDELDSLAPSRG--RSGDSGGVMDRVVSQLLAELDGLHSTQDVF 843
Query: 295 ILTTSNITEKIDVAFV 310
++ +N + +D A +
Sbjct: 844 VIGATNRPDLLDPALL 859
Score = 31.2 bits (69), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 168 LITWNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
L+T VLL GPPG GKT++ A L + L
Sbjct: 459 LLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHL 491
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R +LL GPPG GKT L KA+A + I++ SL SK+ E KLV +
Sbjct: 344 RGLLLFGPPGNGKTMLAKAVAAESN---------ATFFNISAASLTSKYVGEGEKLVRAL 394
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKR--H 290
F ++L + +++F IDEV+SL R R G E + R+ L + D ++
Sbjct: 395 FAVAREL---QPSIIF--IDEVDSLLCER---REG-EHDASRRLKTEFLIEFDGVQSAGD 445
Query: 291 SNVVILTTSNITEKIDVAFVDRADIKQYIGPPS 323
V+++ +N +++D A + R + Y+ P+
Sbjct: 446 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 478
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKM 232
R +LL GPPG GKT L KA+A + I++ SL SK+ E KLV +
Sbjct: 376 RGLLLFGPPGNGKTMLAKAVAAESN---------ATFFNISAASLTSKYVGEGEKLVRAL 426
Query: 233 FQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKR--H 290
F ++L + +++F IDEV+SL R R G E + R+ L + D ++
Sbjct: 427 FAVAREL---QPSIIF--IDEVDSLLCER---REG-EHDASRRLKTEFLIEFDGVQSAGD 477
Query: 291 SNVVILTTSNITEKIDVAFVDRADIKQYIGPPS 323
V+++ +N +++D A + R + Y+ P+
Sbjct: 478 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 510
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 47.0 bits (110), Expect = 3e-05
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 173 RVVLLHGPPGTGKTSLCKALAQKLT---IRLSSRYRYGQLIEINSHSLFSKWFSESGKLV 229
R L +GPPGTGKT + +ALA + + R++ R G SKW ES + +
Sbjct: 461 RGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGA-------DCLSKWVGESERQL 513
Query: 230 TKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKR 289
+F + + + +++F DE++ L R++ + S +V+ +L +D +
Sbjct: 514 RLLFDQAYQM---RPSIIF--FDEIDGLAPVRSSRQDQIHSS----IVSTLLALMDGLDS 564
Query: 290 HSNVVILTTSNITEKIDVA 308
+V++ +N + ID A
Sbjct: 565 RGEIVVIGATNRLDSIDPA 583
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,914,870
Number of Sequences: 37866
Number of extensions: 591298
Number of successful extensions: 1697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 112
length of query: 432
length of database: 18,247,518
effective HSP length: 105
effective length of query: 327
effective length of database: 14,271,588
effective search space: 4666809276
effective search space used: 4666809276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.