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Search of human proteins with 10337609
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 440 e-124
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 282 2e-76
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 231 3e-61
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 231 3e-61
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 60 1e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 1e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 3e-08
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 55 3e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 6e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 6e-08
gi|24430137 L antigen family, member 3 [Homo sapiens] 54 7e-08
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 52 3e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 4e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 4e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 4e-07
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 51 6e-07
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 51 8e-07
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 50 1e-06
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 50 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 50 1e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 1e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 50 1e-06
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 50 1e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 2e-06
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 49 2e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 49 3e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 49 3e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 49 3e-06
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 49 4e-06
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 48 5e-06
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 440 bits (1131), Expect = e-124
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP 180
AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP
Sbjct: 121 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP 180
Query: 181 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI 210
GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI
Sbjct: 181 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI 210
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 282 bits (721), Expect = 2e-76
Identities = 135/141 (95%), Positives = 137/141 (97%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 AVLKDFTVSGNLLFMSVRDQD 141
AVLKDFTVSGNLLF+ + D
Sbjct: 121 AVLKDFTVSGNLLFIRLTAAD 141
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 231 bits (589), Expect = 3e-61
Identities = 108/141 (76%), Positives = 123/141 (87%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 AVLKDFTVSGNLLFMSVRDQD 141
+LK+FTVSGN+L + + D
Sbjct: 121 VLLKEFTVSGNILTIRLTAAD 141
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 231 bits (589), Expect = 3e-61
Identities = 108/141 (76%), Positives = 123/141 (87%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 AVLKDFTVSGNLLFMSVRDQD 141
+LK+FTVSGN+L + + D
Sbjct: 121 VLLKEFTVSGNILTIRLTAAD 141
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 60.5 bits (145), Expect = 1e-09
Identities = 42/95 (44%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 3 AEGQ-GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASG 55
A+G+ G G+ GDA GP GP P GP GN G PG GA G GP GA GAA G
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 56 PRG----GAPRGPHGGAASAQDGRCPCGARRPDSR 86
P G P GP G A + G+ P G P R
Sbjct: 885 PPGPSGNAGPPGP-PGPAGKEGGKGPRGETGPAGR 918
Score = 50.4 bits (119), Expect = 1e-06
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG A PG PG P PG G +G GE G G GP G GA +GP+G
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG- 1091
Query: 60 APRGPHGGAASAQD 73
PRG G D
Sbjct: 1092 -PRGDKGETGEQGD 1104
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/91 (43%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGNA--------GGPGEAGATGGRGPRGA----GAARA 53
G G+ GDA GP GP G P PG N G PGE G G GP GA GA A
Sbjct: 272 GLDGAKGDA-GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGA 330
Query: 54 SGPRG-GAPRGPHG--GAASAQDGRCPCGAR 81
+GP G P GP G GA A+ P G R
Sbjct: 331 AGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Score = 49.7 bits (117), Expect = 2e-06
Identities = 39/90 (43%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGE---AGATGGRGPRG----AGAA 51
G G+ G A PG G P GP GNAG PG AG GG+GPRG AG
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRP 919
Query: 52 RASGPRGGAPRGPHGGAAS-AQDGRCPCGA 80
GP G P GP G S DG P GA
Sbjct: 920 GEVGPPG--PPGPAGEKGSPGADG--PAGA 945
Score = 48.5 bits (114), Expect = 4e-06
Identities = 32/77 (41%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G G+ GDA PG PG PG G AG PG G G GP+GA G+ G R
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR 763
Query: 58 G-GAPRGPHGGAASAQD 73
G P GP G A + D
Sbjct: 764 GLTGPIGPPGPAGAPGD 780
Score = 47.8 bits (112), Expect = 7e-06
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GA 60
A +G G+TG A PG P GP G G PG GA G GP+G G+ G RG
Sbjct: 319 AGARGNDGATGAAGPPG----PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 61 PRGPHGGAASA 71
P GP G A A
Sbjct: 375 PPGPAGAAGPA 385
Score = 46.2 bits (108), Expect = 2e-05
Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAP 61
A G G+ G + GP GPG P GP GN+G PG G+ G G +G G GP G P
Sbjct: 406 AGAPGFPGARGPS-GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG--P 462
Query: 62 RGPHG 66
G G
Sbjct: 463 AGEEG 467
Score = 46.2 bits (108), Expect = 2e-05
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G+ GD PG PG DG G G PG+AGA G GP G AG A GP
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 58 G--GAPRGPHGGAASAQDGRCPCGA 80
G GAP GA A+ P GA
Sbjct: 854 GNVGAP-----GAKGARGSAGPPGA 873
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/98 (39%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 5 GQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGE---AGATGGRGPRGAGAARA----SG 55
G+G G TG A PG GP P GP G G PG AGA G GP+G R G
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 56 PRG-----GAPRGPHG-----GAASAQDGRCPCGARRP 83
RG G P GP G G + A R P G P
Sbjct: 966 QRGERGFPGLP-GPSGEPGKQGPSGASGERGPPGPMGP 1002
Score = 45.8 bits (107), Expect = 3e-05
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
+G G G PG G+ P GP G AG PG+ G +G GP G GA A G RG
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGE 804
Query: 59 GAPRGPHGGA 68
P GP G A
Sbjct: 805 PGPPGPAGFA 814
Score = 45.1 bits (105), Expect = 4e-05
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARAS----GPRG-- 58
G G G A PG G+P GP G AG PGE G G G G AR G RG
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 59 --GAPRGPHG-GAASAQDG 74
P GP G A DG
Sbjct: 689 GPPGPAGPRGANGAPGNDG 707
Score = 44.3 bits (103), Expect = 8e-05
Identities = 56/200 (28%), Positives = 64/200 (32%), Gaps = 54/200 (27%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
QG GG G G PG P G G+ G GE G G +GP G GA GP G
Sbjct: 421 QGPGGPPGPKGNSGEPGAP-GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Query: 59 -GAPRGPHGGAAS----AQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDA 113
P G GG S DG G + P P SP EA
Sbjct: 480 LPGPPGERGGPGSRGFPGADG--VAGPKGPAGERGSPGPAGPKGSPGEA----------- 526
Query: 114 APLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKH 173
RPG G + + GS P+G+ P
Sbjct: 527 ---GRPG---------------------EAGLPGAKGLTGSPGSPGPDGKTG----PPGP 558
Query: 174 KVSEQRPGTPGPPPPEGAQG 193
+ RPG PGPP G G
Sbjct: 559 AGQDGRPGPPGPPGARGQAG 578
Score = 44.3 bits (103), Expect = 8e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 7 GTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G GS G+A PG G+P GP G G PG AG G GP G AR
Sbjct: 518 GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577
Query: 56 PRGGAPRGPHGGA 68
G P GP G A
Sbjct: 578 GVMGFP-GPKGAA 589
Score = 43.9 bits (102), Expect = 1e-04
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGG---- 59
G G+ G+ G G+P PG G AG GEAGA G GP G AG GP G
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 643
Query: 60 ---APRGPHGGAASAQDGRCP 77
P GP G A + P
Sbjct: 644 GLPGPAGPPGEAGKPGEQGVP 664
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
G G+ GD G GP P GP G G PG+ G G GP G AG A G G +G
Sbjct: 773 GPAGAPGDK-GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA--KGEP 829
Query: 66 GGAASAQDGRCP 77
G A + D P
Sbjct: 830 GDAGAKGDAGPP 841
Score = 43.5 bits (101), Expect = 1e-04
Identities = 31/71 (43%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G +G+A PG PG P G G AG PGE G G GP G G+ A GP
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA 943
Query: 58 G--GAPRGPHG 66
G G P GP G
Sbjct: 944 GAPGTP-GPQG 953
Score = 42.4 bits (98), Expect = 3e-04
Identities = 33/85 (38%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGAT---GGRGPRGAGAARASGPRGGA 60
QG G G+ A GP GP P GP G G GEAG G RGP G AR G
Sbjct: 202 QGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGL 261
Query: 61 P--RGPHG--GAASAQDGRCPCGAR 81
P +G G G A+ P G +
Sbjct: 262 PGMKGHRGFSGLDGAKGDAGPAGPK 286
Score = 42.4 bits (98), Expect = 3e-04
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G TG GP G GP G G G+AG G GP+GA G P P
Sbjct: 548 GPDGKTGPP-GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 67 GAASAQDGRCPCGARRP 83
+ +DG GA+ P
Sbjct: 607 VGPAGKDGE--AGAQGP 621
Score = 42.4 bits (98), Expect = 3e-04
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 27/93 (29%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------------- 47
G G TG A GP GP GP G G G+ G TG +G RG
Sbjct: 1064 GDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPP 1123
Query: 48 -----AGAARASGPRGGAPRGPHGGA-ASAQDG 74
G + ASGP G PRGP G A A +DG
Sbjct: 1124 GSPGEQGPSGASGPAG--PRGPPGSAGAPGKDG 1154
Score = 42.4 bits (98), Expect = 3e-04
Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG----GA 60
G GS G+ G GP P GP G+AG PG+ G G GP G GPRG
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG-----PPGPRGRTGDAG 1175
Query: 61 PRGPHG 66
P GP G
Sbjct: 1176 PVGPPG 1181
Score = 42.0 bits (97), Expect = 4e-04
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G G PG PG P G G G PGE GA+G GPRG AG
Sbjct: 182 GPSGPRGLPGPPGAPG-PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 54 SGPRGGAPRGPHG 66
G RG P GP G
Sbjct: 241 PGERG--PPGPQG 251
Score = 42.0 bits (97), Expect = 4e-04
Identities = 33/78 (42%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPH 65
G GS G PG G G G AG PG GA G GP G A SG RG P GP
Sbjct: 1019 GAEGSPGRDGSPGAKG-DRGETGPAGPPGAPGAPGAPGP--VGPAGKSGDRGETGPAGPA 1075
Query: 66 GGAASAQDGRCPCGARRP 83
G P GAR P
Sbjct: 1076 GPVG-------PVGARGP 1086
Score = 41.6 bits (96), Expect = 5e-04
Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
+ TGG + GP GP GP G G PG G G +GP G G ASGP G PRGP
Sbjct: 170 KSTGGIS--VPGPMGPS---GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG--PRGP 222
Query: 65 HG 66
G
Sbjct: 223 PG 224
Score = 41.2 bits (95), Expect = 6e-04
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNA--------GGPGEAGATGGRGPRGAGAARASGPRG 58
G G+ G A PG G P G N G PG G +G +GP G + +
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GAP A + G P G + P
Sbjct: 437 GAPGSKGDTGAKGEPG--PVGVQGP 459
Score = 41.2 bits (95), Expect = 6e-04
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA----PRGPHGGA 68
GP GP +G GN G G+AGA G G +GA G G RG A P+G G A
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA 748
Score = 40.8 bits (94), Expect = 8e-04
Identities = 33/91 (36%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-------AGAARAS 54
G G G PG G P PG GN G G AG G GP G GA +
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRP 83
GP+G PRG G G P GA P
Sbjct: 356 GPQG--PRGSEGPQGVRGEPGPPGPAGAAGP 384
Score = 40.8 bits (94), Expect = 8e-04
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G TG A PG PG P GP G+ G G G G GP GA +
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD 391
Query: 59 GAP--RGPHG-----GAASAQDGRCPCGARRP 83
G P +G +G GA R P G + P
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGG---RGPRGA-GAARAS 54
G G G+A PG G+P G G G PGE G G GPRGA GA
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 55 GPRG--GAPRGPHGGAASAQDG 74
G +G GAP P A G
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQG 728
Score = 40.0 bits (92), Expect = 0.001
Identities = 37/99 (37%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G G G+A PG PG PG G AG PG G G G GA G A +GP+
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 58 G--------GAP--RGPHG--GAASAQDGRCPCGARRPD 84
G GAP GP G G P GAR D
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND 325
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/84 (40%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAP 61
QG G G A GP G GP G G PG+ G G GP G G A A G +G P
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 62 RGPHG--GAASAQDGRCPCGARRP 83
GP G GA A R G P
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGP 810
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G+A G PG P GP G G G AG+ G +G G +GP G A +
Sbjct: 608 GPAGKDGEAGAQGPPG-PAGPAGERGEQGPAGSPGFQGLPG-----PAGPPGEAGKPGEQ 661
Query: 67 GAASAQDGRCPCGAR 81
G P GAR
Sbjct: 662 GVPGDLGAPGPSGAR 676
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/73 (45%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGP------GEAGATGGRGPRG-AGAARAS 54
AEG G GS G A G G P GP G G P G AG +G RG G AG A
Sbjct: 1020 AEGSPGRDGSPG-AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV 1078
Query: 55 GPRGG-APRGPHG 66
GP G P GP G
Sbjct: 1079 GPVGARGPAGPQG 1091
Score = 38.9 bits (89), Expect = 0.003
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA------------- 48
+A QG GS +GP G GP G AG G AG G G GA
Sbjct: 354 EAGPQGPRGS----EGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 409
Query: 49 ---GAARASGPRG-GAPRGPHG--GAASAQDGRCPCGAR 81
GA SGP+G G P GP G G A + GA+
Sbjct: 410 GFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Score = 38.9 bits (89), Expect = 0.003
Identities = 31/83 (37%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP----- 61
G G G GP G GP G G PG AG G G GA A S R G+P
Sbjct: 977 GPSGEPGK-QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035
Query: 62 ---RGPHG--GAASAQDGRCPCG 79
GP G GA A P G
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVG 1058
Score = 38.5 bits (88), Expect = 0.004
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 41/190 (21%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
E G G GD GP GP P GP G G PG+ G G GP G G AP+
Sbjct: 106 ETTGVEGPKGDT-GPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLG-GNFAPQL 163
Query: 64 PHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVL 123
+G + G I++P PM R + AP P+
Sbjct: 164 SYGYDEKSTGG-----------------ISVP--GPMGPSGPRGLPGPPGAPGPQG---- 200
Query: 124 KDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGTP 183
F + E G +G G P G+ D K RPG
Sbjct: 201 ----------FQGPPGEPGE-PGASGPMG-PRGPPGPPGKNGDDGEAGK----PGRPGER 244
Query: 184 GPPPPEGAQG 193
GPP P+GA+G
Sbjct: 245 GPPGPQGARG 254
Score = 37.4 bits (85), Expect = 0.009
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ PG PG PG G +G GE G G GP G R GAP G
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAP-GA 1020
Query: 65 HG-----GAASAQDGRCPCGARRP 83
G G+ A+ R G P
Sbjct: 1021 EGSPGRDGSPGAKGDRGETGPAGP 1044
Score = 35.4 bits (80), Expect = 0.035
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G + G PG P PG G G +G G RGP G+ A G P GP
Sbjct: 1105 RGIKGHRGFSGLQGPPGPPGSPG-EQGPSGASGPAGPRGPPGSAGAPGKDGLNGLP-GPI 1162
Query: 66 G 66
G
Sbjct: 1163 G 1163
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 8 TGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
T T +GP G P GP G AG PG G G G G GP G P GP G
Sbjct: 103 TDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPG-----PPGPPG--PPGPPG 154
Score = 32.3 bits (72), Expect = 0.30
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G G A PG G+ P GP G G G G G GP G ++G
Sbjct: 1139 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGG 67
GP GP G G G PG G G GP AG + P+ + GG
Sbjct: 1163 GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
A G G G GP GP P G G+AG G G G GP G +A
Sbjct: 1147 AGAPGKDGLNG-LPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.0 bits (136), Expect = 1e-08
Identities = 39/81 (48%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPRGGA-PR 62
GTGG G+ PG PG P G G G PG +AGA G RGP G A A G RGGA P
Sbjct: 645 GTGGPPGENGKPGEPG-PKGDAGAPGAPGGKGDAGAPGERGP--PGLAGAPGLRGGAGPP 701
Query: 63 GPHGGAASAQDGRCPCGARRP 83
GP GG +A P A P
Sbjct: 702 GPEGGKGAAGPPGPPGAAGTP 722
Score = 53.1 bits (126), Expect = 2e-07
Identities = 61/207 (29%), Positives = 76/207 (36%), Gaps = 48/207 (23%)
Query: 5 GQGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG 58
G+G G G PG PG P GP G +G GE+G G G P AG+ A GP+G
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG 1089
Query: 59 GAPRGPHG-----GAASAQDGR-CPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
PRG G GAA + R P P S P + + + +
Sbjct: 1090 --PRGDKGETGERGAAGIKGHRGFPGNPGAPGS---------PGPAGQQGAIGSPGPAGP 1138
Query: 113 AAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPK 172
P+ G KD T SG+ +G P G +
Sbjct: 1139 RGPVGPSGPPGKDGT-SGH--------------------PGPIGPPGPRGNRGE----RG 1173
Query: 173 HKVSEQRPGTPGPPPPEGAQGDGCRGV 199
+ S PG PGPP P GA G C GV
Sbjct: 1174 SEGSPGHPGQPGPPGPPGAPGPCCGGV 1200
Score = 48.9 bits (115), Expect = 3e-06
Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGA-GAA 51
G G G+ PG PGI P GP G G PG+ G GG+G RGA G
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK 833
Query: 52 RASGPRGGAPRGPHGGAASA 71
GP G A GP GG+ A
Sbjct: 834 GEGGPPGVA--GPPGGSGPA 851
Score = 48.9 bits (115), Expect = 3e-06
Identities = 61/202 (30%), Positives = 71/202 (35%), Gaps = 43/202 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G+ G G+ PG G P PG G GG GE GA G +G G AG SGP G
Sbjct: 794 RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG- 852
Query: 60 APRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRP 119
P GP G P A P +R L P S+ P P
Sbjct: 853 -PPGPQGVKGERGSPGGPGAAGFPGARGLP---GPPGSNGNPG---------PPGPSGSP 899
Query: 120 GAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQR 179
G +D AG G G + P+G D P K S
Sbjct: 900 G-----------------KDGPPGPAGNTGAPG-SPGVSGPKG----DAGQPGEKGSPGA 937
Query: 180 PGTPGPPPPEGAQG-DGCRGVA 200
G PG P P G G G RG+A
Sbjct: 938 QGPPGAPGPLGIAGITGARGLA 959
Score = 48.5 bits (114), Expect = 4e-06
Identities = 35/77 (45%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GA- 60
G GG G GP GP P GP G +G PG G+ G +GP G G A SGP G GA
Sbjct: 163 GVAVGGLAG-YPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAI 221
Query: 61 -PRGPHG-GAASAQDGR 75
P GP G S + GR
Sbjct: 222 GPSGPAGKDGESGRPGR 238
Score = 47.8 bits (112), Expect = 7e-06
Identities = 40/99 (40%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN------------------AGGPGEAGATGGRGPRG 47
QG G G+ GP GP P GPGG+ G PGE G G GP+G
Sbjct: 605 QGPPGKNGET-GPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKG 663
Query: 48 -AGAARASGPRG--GAP--RGPHG--GAASAQDGRCPCG 79
AGA A G +G GAP RGP G GA + G P G
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Score = 46.2 bits (108), Expect = 2e-05
Identities = 64/216 (29%), Positives = 76/216 (35%), Gaps = 48/216 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G+ G G PG P G G GGPG G G GPRG +GP G P GP G
Sbjct: 723 GLQGMPGERGGLGSPG-PKGDKGEPGGPGADGVPGKDGPRG-----PTGPIG--PPGPAG 774
Query: 67 GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDF 126
+G P P I P SP E R + P PGA ++
Sbjct: 775 QPGDKGEGGAP---GLPG-------IAGPRGSPGE-----RGETGPPGPAGFPGAPGQNG 819
Query: 127 TVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQK-------------------ARD 167
G + ++ G + G G A P G + AR
Sbjct: 820 EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879
Query: 168 LRTPKHKVSEQRPGTPGPPPPEGAQG-DGCRGVAFN 202
L P G PGPP P G+ G DG G A N
Sbjct: 880 LPGPPGS-----NGNPGPPGPSGSPGKDGPPGPAGN 910
Score = 45.1 bits (105), Expect = 4e-05
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
GQG G GD PG PGIP G G+ G PG+ G+ G GP G + +GP+ +P+
Sbjct: 101 GQGPQGPKGD---PGPPGIP-GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQ 154
Score = 45.1 bits (105), Expect = 4e-05
Identities = 34/69 (49%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGN-----AGGPGEAGATGGRGPRG-AGAARASGPRGG 59
G G G A GP GP GI PGG AG PG G G RGP G AGA A G RGG
Sbjct: 372 GPQGHAG-AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
Query: 60 APRGPHGGA 68
A GA
Sbjct: 431 AGEPGKNGA 439
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/73 (45%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPRG-GAPR 62
G G G G DGP GP P GP G AG PG+ G G G G R S G RG P
Sbjct: 748 GPGADGVPGK-DGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Query: 63 GPHG-GAASAQDG 74
GP G A Q+G
Sbjct: 807 GPAGFPGAPGQNG 819
Score = 44.7 bits (104), Expect = 6e-05
Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G G+ G G PG P GP G AG PG GA G GP G+ G+ A G RG H
Sbjct: 318 GARGNDGARGSDGQPG-PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Query: 66 GGA 68
GA
Sbjct: 377 AGA 379
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/82 (39%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-------GAARASGPR 57
G GS G G GIP PG G G PG AGA G G RG GA GPR
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446
Query: 58 G-----GAPRGPHGGAASAQDG 74
G G P P +DG
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDG 468
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G+ G+ PG G P GP G G G AG G GP G A R G P GP
Sbjct: 477 GLPGAAGERGAPGFRG-PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533
Score = 42.7 bits (99), Expect = 2e-04
Identities = 64/213 (30%), Positives = 77/213 (36%), Gaps = 31/213 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRG 58
A+G+ G G G+A PG PG DG G+ G PG G G G RGA R +GP G
Sbjct: 439 AKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG 498
Query: 59 -----------GA--PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELV 105
GA P GP G A P G P R + P S
Sbjct: 499 IPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG---PGMRGMPGSPGGPGSDGKPGPPG 555
Query: 106 RRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKA 165
+ S P P P V G F + D GA G G P+G
Sbjct: 556 SQGESGRPGP-PGPSGPRGQPGVMG---FPGPKGND--GAPGKNGERGGPGGPGPQGPPG 609
Query: 166 RDLRT-PKHKVSEQRP----GTPGPPPPEGAQG 193
++ T P+ P G GPP P+G QG
Sbjct: 610 KNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQG 642
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/93 (36%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--------GP-GEAGATGGRGPRGAGAARASGPR 57
G G G+ GPGGPG P GP G G GP G G G GP G +
Sbjct: 588 GAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT 646
Query: 58 GGAP--------RGPHG--GAASAQDGRCPCGA 80
GG P GP G GA A G+ GA
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGA 679
Score = 42.0 bits (97), Expect = 4e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARAS-GPRGG 59
A +G G+ G PG PG P G G+ G GE G G G GA R GP+G
Sbjct: 317 AGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Query: 60 A----PRGPHG 66
A P GP G
Sbjct: 377 AGAQGPPGPPG 387
Score = 42.0 bits (97), Expect = 4e-04
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 7 GTGGSTGDADGPGGPGIP-----------DGPGGNAGGPGEAGATGGRGPRGA-GAARAS 54
G G +G+ PG G+P DG G+ G PG G+ GG+G RG G+ A
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 55 G-PRGGAPRGPHGGAASAQD 73
G P P GP G A + D
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGD 1063
Score = 40.8 bits (94), Expect = 8e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG------GPGEAGATGGRGPRG----AGAARASGP 56
G G G+ PG PG+ GP G+AG PG G G GP G GA +GP
Sbjct: 903 GPPGPAGNTGAPGSPGV-SGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 57 RG-GAPRGPHG 66
G PRG G
Sbjct: 962 PGMPGPRGSPG 972
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G G A G PG P GP G AG GE+G G G RG G GP G P
Sbjct: 200 QGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGP-AGIPG 258
Query: 63 GPHGGAASAQDGR 75
P DGR
Sbjct: 259 FPGMKGHRGFDGR 271
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARAS 54
A+G+ G GS G PG G P GP G+AG PG G+ GG+G G AG A
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEP-GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Query: 55 GPRGGAPRGPHGGAAS 70
G G RGP G A +
Sbjct: 408 GLMGA--RGPPGPAGA 421
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGA------------ 48
+G G G+ PG G P PG G G G AG G GPRG+
Sbjct: 923 KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK 982
Query: 49 -GAARASGPRGGAPRGPHG 66
GA SG RG P GP G
Sbjct: 983 PGANGLSGERG--PPGPQG 999
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G PG+ G G PGE GA G GPRGA R G P P
Sbjct: 266 RGFDGRNGEKGETGAPGLK----GENGLPGENGAPGPMGPRGAPGER------GRPGLPG 315
Query: 66 GGAASAQDG 74
A DG
Sbjct: 316 AAGARGNDG 324
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG---GRGPRGAGAARASGPRGGAPRG 63
G G G+ PG G P GP G G PGE G G G RG AR S + G P G
Sbjct: 279 GAPGLKGENGLPGENGAP-GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPP-G 336
Query: 64 PHGGA 68
P G A
Sbjct: 337 PPGTA 341
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/90 (36%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA----GAAR 52
++GQ G G G A PG PG P G G+ G PG+ G G +G GA G
Sbjct: 328 SDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG 387
Query: 53 ASG-PRGGAPRGPHG--GAASAQDGRCPCG 79
+G P G GP G GA R P G
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPG 417
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARASGPRG 58
+G G G G PG P G G AG PG GA G G G+ G A+G RG
Sbjct: 428 RGGAGEPGKNGAKGEPG-PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 59 G----APRGPHG-----GAASAQDGRCPCGAR 81
P GP+G G A + P G R
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPR 518
Score = 37.0 bits (84), Expect = 0.012
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
+G+ GS G PG PG P PG GG G A G G + G A
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA 1217
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRG-- 58
G G+ G A PG PG PG G +G PG G +G RGP G G +G G
Sbjct: 951 GITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEP 1010
Query: 59 GAPRGPHGGAASAQDG 74
G P +DG
Sbjct: 1011 GRDGNPGSDGLPGRDG 1026
Score = 35.8 bits (81), Expect = 0.027
Identities = 34/88 (38%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG-- 58
G G+ G+ PG PG DG G+ G PG G G G P GA GP G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 59 ---GAP--RGPHG--GAASAQDGRCPCG 79
GAP RG G G A AQ P G
Sbjct: 360 GSNGAPGQRGEPGPQGHAGAQGPPGPPG 387
Score = 35.4 bits (80), Expect = 0.035
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G A G PG+ G G G G PG G G G G A+ + G+P
Sbjct: 411 GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSP 470
Query: 62 RGP-HGGAASAQDGRCPCGARRP 83
P G A R G R P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGP 493
Score = 35.0 bits (79), Expect = 0.046
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
GT G G GP GP G G+ G PG G G GP GA G A G G
Sbjct: 1152 GTSGHPGPI-GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGG 1210
Query: 67 GAA 69
A
Sbjct: 1211 EKA 1213
Score = 35.0 bits (79), Expect = 0.046
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE-AGATGGRGPRGAGAARASG 55
+G G G PG PG P GP G G PG G G G G +A G
Sbjct: 1166 RGNRGERGSEGSPGHPGQP-GPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 33.1 bits (74), Expect = 0.18
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGA--------------- 48
G G G+ PG PGI GP G G PG G G G +G
Sbjct: 234 GRPGRPGERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 49 -GAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSR 86
GA GPRG G A R GAR D +
Sbjct: 293 NGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Score = 32.7 bits (73), Expect = 0.23
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRGP 64
G G G G PG P GP G G GE G+ G G G GP G GAP
Sbjct: 1143 GPSGPPGKDGTSGHPG-PIGPPGPRGNRGERGSEGSPGHPG-----QPGPPGPPGAPGPC 1196
Query: 65 HGGAASA 71
GG +A
Sbjct: 1197 CGGVGAA 1203
Score = 27.7 bits (60), Expect = 7.4
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPRG---GAPRGP 64
P P GP G G PG G G G P G+ + GP G P GP
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.8 bits (133), Expect = 3e-08
Identities = 63/209 (30%), Positives = 73/209 (34%), Gaps = 37/209 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPRGG-APR 62
G G+ G+A G PG DGP G G PG E G G GP GAA A GP G P
Sbjct: 916 GVNGAPGEAGRDGNPG-NDGPPGRDGQPGHKGERGYPGNIGP--VGAAGAPGPHGPVGPA 972
Query: 63 GPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
G HG G P GA P P + +R PR
Sbjct: 973 GKHGNRGETGPSGPVGPAGAVGP-------------RGPSGPQGIRGDKGEPGEKGPRGL 1019
Query: 121 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRT---------- 170
LK L ++ D+ G + G G A P G +D RT
Sbjct: 1020 PGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAG-PRGPAGPSGPAGKDGRTGHPGTVGPAG 1078
Query: 171 ----PKHKVSEQRPGTPGPPPPEGAQGDG 195
H+ PG PGPP P G G G
Sbjct: 1079 IRGPQGHQGPAGPPGPPGPPGPPGVSGGG 1107
Score = 54.3 bits (129), Expect = 7e-08
Identities = 33/77 (42%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA---- 60
+G+ G G+ GP GP GP G AG PG G G +GP+G G +GP G A
Sbjct: 708 RGSPGERGEV-GPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 61 PRGPHGGAASAQDGRCP 77
P GP G A S DG P
Sbjct: 767 PNGPPGPAGSRGDGGPP 783
Score = 51.2 bits (121), Expect = 6e-07
Identities = 36/91 (39%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG----- 59
+G G G+ PG G PG G PG AGATG RG G AG A +GPRG
Sbjct: 657 KGEPGLRGEIGNPGRDGARGAPGA-VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG 715
Query: 60 --APRGPHG-----GAASAQDGRCPCGARRP 83
P GP+G GAA + GA+ P
Sbjct: 716 EVGPAGPNGFAGPAGAAGQPGAKGERGAKGP 746
Score = 50.8 bits (120), Expect = 8e-07
Identities = 32/71 (45%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG GS G A GP GP P G G G PG G G RGP+G G A GP G P
Sbjct: 1041 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPG--PP 1098
Query: 63 GPHGGAASAQD 73
GP G + D
Sbjct: 1099 GPPGVSGGGYD 1109
Score = 48.1 bits (113), Expect = 5e-06
Identities = 33/80 (41%), Positives = 36/80 (45%), Gaps = 19/80 (23%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGE------------AGATGGRGPRG- 47
QG G G+ PG PG P GP G G PGE AG G RGP G
Sbjct: 537 QGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGE 596
Query: 48 AGAARASGPRGG-APRGPHG 66
+GAA +GP G P GP G
Sbjct: 597 SGAAGPTGPIGSRGPSGPPG 616
Score = 47.8 bits (112), Expect = 7e-06
Identities = 36/84 (42%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G +G+A G PG P GP G G PG G G RG RG AGA GP G G
Sbjct: 844 GEKGPSGEAGTAGPPGTP-GPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGP 902
Query: 61 P--RGPHGGAASAQDGRCPCGARR 82
P RGP G S P A R
Sbjct: 903 PGARGPPGAVGSPGVNGAPGEAGR 926
Score = 44.7 bits (104), Expect = 6e-05
Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G G+ G +DG GP P GP G+AG PG GA G +G GA G A +GP G PRG
Sbjct: 229 GPAGARG-SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG--PRGEV 285
Query: 66 G 66
G
Sbjct: 286 G 286
Score = 44.3 bits (103), Expect = 8e-05
Identities = 60/203 (29%), Positives = 73/203 (35%), Gaps = 34/203 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G TG G GP P GP GN G PG GA G GP G GAA G +G
Sbjct: 598 GAAGPTGPI-GSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGE 656
Query: 59 -GAP--RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDA 113
G P RG G G A+ GA P ++ E + A
Sbjct: 657 KGEPGLRGEIGNPGRDGARGAPGAVGAPGPAG-----------ATGDRGEAGAAGPAGPA 705
Query: 114 APLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKH 173
P PG + N + GA R G+ P+G+ + P
Sbjct: 706 GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGER------GAKGPKGENG--VVGPTG 757
Query: 174 KVSEQRPGTP-GPPPPEGAQGDG 195
V P P GPP P G++GDG
Sbjct: 758 PVGAAGPAGPNGPPGPAGSRGDG 780
Score = 43.9 bits (102), Expect = 1e-04
Identities = 62/217 (28%), Positives = 79/217 (36%), Gaps = 25/217 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--- 58
+G G G GP GP GP G G PG AG+ G GP G GAA +GP G
Sbjct: 744 KGPKGENGVV-GPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSG 802
Query: 59 -GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLP 117
P GP G A + R P G + P R ++ P E + P
Sbjct: 803 ISGPPGP-PGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861
Query: 118 RPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVG--WGLGSASPEGQKARD-------- 167
P +L + +L + +R G VG LG A P G +
Sbjct: 862 GPQGLLG----APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGV 917
Query: 168 LRTPKHKVSEQRPGTPGPPPPEGAQG-DGCRGVAFNV 203
P + PG GPP +G G G RG N+
Sbjct: 918 NGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNI 954
Score = 43.5 bits (101), Expect = 1e-04
Identities = 57/198 (28%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G A PG PG+ PG G G G AG G G RGA SGP G RG
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGA-----SGPAG--VRG 433
Query: 64 PHGGAASAQDGRCPCGARRPDSRLLQLHITMPFS----SPMEAELVRRILSRDAAPLPRP 119
P+G A RP L +P S P E + D P P
Sbjct: 434 PNGDAG------------RPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 481
Query: 120 GAVLKDFTVSGNLLFMSVR----DQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKV 175
A + GN+ F + D + G + G+ P+G P +
Sbjct: 482 PAGARG--EPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQ-GPPGPQG 538
Query: 176 SEQRPGTPGPPPPEGAQG 193
+ G GPP P G QG
Sbjct: 539 VQGGKGEQGPPGPPGFQG 556
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 3 AEGQGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
A +G G+ G+ + GP GP P G G G GEAG+ G GP G G+ + G G
Sbjct: 351 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGA 410
Query: 60 APRGPHGGAASAQDGRCPCGARRPD 84
R G ++ P G R P+
Sbjct: 411 DGRAGVMGPPGSRGASGPAGVRGPN 435
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/77 (36%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 5 GQGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
G G G G PG G P GP G G PG+ G G RGP G G A G G
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG 148
Query: 59 GAPRGPHGGAASAQDGR 75
R G Q R
Sbjct: 149 KPGRPGERGVVGPQGAR 165
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPR 62
+G G+ G PG PG PG G G PGE G G GP GA G+ + GP G P
Sbjct: 189 KGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVG--PA 246
Query: 63 GPHGGA 68
GP G A
Sbjct: 247 GPIGSA 252
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/98 (37%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 6 QGTGGSTGDADGPGGPG---IPDGPGGNAGGPGEAGATGGRGPRGA----------GAAR 52
+G G G A PG PG IP GP G AG G G G GP G+ G+A
Sbjct: 309 KGAAGLPGVAGAPGLPGPRGIP-GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG 367
Query: 53 ASGPRGGA----PRGPHGGAASAQDGRCPCGARRPDSR 86
GP G + RGP+G A SA P P SR
Sbjct: 368 PQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR 405
Score = 42.4 bits (98), Expect = 3e-04
Identities = 35/89 (39%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G G A G PG PDG G G PG G GG+G +G G SGP G
Sbjct: 508 GDKGHAGLAGARGAPG-PDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGE 566
Query: 59 -GAP--RGPHG-----GAASAQDGRCPCG 79
G P RG HG G A + R P G
Sbjct: 567 VGKPGERGLHGEFGLPGPAGPRGERGPPG 595
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG---- 58
A +G+ GS G GP GP GP G G PG G G G AG A +GPRG
Sbjct: 231 AGARGSDGSVGPV-GPAGPIGSAGPPGFPGAPGPKGEIGAVG--NAGPAGPAGPRGEVGL 287
Query: 59 ---GAPRGPHG 66
P GP G
Sbjct: 288 PGLSGPVGPPG 298
Score = 40.8 bits (94), Expect = 8e-04
Identities = 55/202 (27%), Positives = 69/202 (34%), Gaps = 46/202 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG------- 58
G G+ G A GP GP G G G PG G G GP G AG G RG
Sbjct: 523 GPDGNNG-AQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGL 581
Query: 59 GAPRGPHG-----GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRI-LSRD 112
P GP G G + A P G+R P P + E +V + +
Sbjct: 582 PGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP------PGPDGNKGEPGVVGAVGTAGP 635
Query: 113 AAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPK 172
+ P PG +R AG + G G G + ++ P
Sbjct: 636 SGPSGLPG--------------------ERGAAG----IPGGKGEKGEPGLRG-EIGNPG 670
Query: 173 HKVSEQRPGTPGPPPPEGAQGD 194
+ PG G P P GA GD
Sbjct: 671 RDGARGAPGAVGAPGPAGATGD 692
Score = 39.7 bits (91), Expect = 0.002
Identities = 35/88 (39%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 2 QAEGQGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG 58
Q +G+G G GPG G+ P GP G AG PG G G G P G +G RG
Sbjct: 80 QYDGKGVGL------GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133
Query: 59 GAPRGPHGGAASAQDGRCPCGARRPDSR 86
P GP G A +DG P RP R
Sbjct: 134 --PAGPPGKA--GEDGH-PGKPGRPGER 156
Score = 38.9 bits (89), Expect = 0.003
Identities = 37/92 (40%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-- 58
G G G+ A G GP P GP G G PG +G G G GA GA A+G G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318
Query: 59 GAP--RGPHG-----GAASAQDGRCPCGARRP 83
GAP GP G GAA A R G P
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 350
Score = 38.1 bits (87), Expect = 0.005
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG------- 59
G G G+ PG PG DG G G PG G G G G AA+ G G
Sbjct: 36 GDRGPRGERGPPGPPG-RDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMG 94
Query: 60 --APRGPHG--GAASAQDGRCPCG 79
PRGP G GA Q + P G
Sbjct: 95 LMGPRGPPGAAGAPGPQGFQGPAG 118
Score = 37.7 bits (86), Expect = 0.007
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG-- 59
+G G G PG PG+ G G PGE G G G RG G A GP G
Sbjct: 180 RGHNGLDGLKGQPGAPGVK----GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Query: 60 -----APRGPHGGAASA 71
P GP G SA
Sbjct: 236 SDGSVGPVGPAGPIGSA 252
Score = 37.0 bits (84), Expect = 0.012
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G TG A G GP P G G G PG+ G G RG G AR G P
Sbjct: 121 GEPGQTGPA-GARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP 174
Score = 35.8 bits (81), Expect = 0.027
Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 7 GTGGSTGDADGPG--------GPGIPDGPGGNAGGPGEAGATGGRGPRG----------A 48
GT G TG PG GP G G+ G G AG G GP G
Sbjct: 208 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEI 267
Query: 49 GAARASGPRGGAPRGPHG 66
GA +GP G P GP G
Sbjct: 268 GAVGNAGPAG--PAGPRG 283
Score = 35.0 bits (79), Expect = 0.046
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAP 61
QG G G+ GP G P GP G AG G G G G RG GP+G G P
Sbjct: 114 QGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERG-----VVGPQGARGFP 168
Query: 62 RGP 64
P
Sbjct: 169 GTP 171
Score = 35.0 bits (79), Expect = 0.046
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G+ PG PG P GP G G PG G G +G RG + GAP
Sbjct: 136 GPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAP 195
Score = 33.5 bits (75), Expect = 0.13
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGR 75
GP G P G G G PG G G GP G GP G P G G A+ DG+
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPG-----PPGPPG--PPGLGGNFAAQYDGK 84
Score = 30.0 bits (66), Expect = 1.5
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G PG PG P G G G PG G G RG G G A G +
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 58 G--GAP 61
G GAP
Sbjct: 199 GEPGAP 204
Score = 27.7 bits (60), Expect = 7.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG 41
+G G G A GP GP P GP G +GG + G G
Sbjct: 1080 RGPQGHQGPA-GPPGPPGPPGPPGVSGGGYDFGYDG 1114
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 55.5 bits (132), Expect = 3e-08
Identities = 62/203 (30%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 5 GQGTGGSTG---DADGPGGPGIPDGPGGNAGGPGEAGATG-GRGPRGAGAAR---ASGPR 57
G T GS+ + GP GP P GP G+ G PG GA G GP G++ SGP
Sbjct: 936 GFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPP 995
Query: 58 GGAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLP 117
G P GP G P G+ + +Q +I S M+++ +R LS P
Sbjct: 996 G--PPGPPG----------PPGSISSSGQEIQQYI----SEYMQSDSIRSYLSGVQGPPG 1039
Query: 118 RPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGL----GSASPEGQKARDLRTP-K 172
PG T++G S + +R G+G+ S S E A R +
Sbjct: 1040 PPGPPGPVTTITGETFDYS--ELASHVVSYLRTSGYGVSLFSSSISSEDILAVLQRDDVR 1097
Query: 173 HKVSEQRPGTPGPPPPEGAQGDG 195
+ + G GPP P GA GDG
Sbjct: 1098 QYLRQYLMGPRGPPGPPGASGDG 1120
Score = 44.7 bits (104), Expect = 6e-05
Identities = 61/213 (28%), Positives = 72/213 (33%), Gaps = 29/213 (13%)
Query: 6 QGTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-AP 61
QG G G G GP P GP G+ G G G TG G RG GA G +G P
Sbjct: 685 QGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGP 744
Query: 62 RGP--HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLP-- 117
GP H G Q G R P P P + L + P
Sbjct: 745 AGPDGHQGPRGEQGLTGMPGIRGPPG---------PSGDPGKPGLTGPQGPQGLPGTPGR 795
Query: 118 -----RPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEG----QKARDL 168
PGA K T G+ + GA G A P G Q+ +L
Sbjct: 796 PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNL 855
Query: 169 RTPKHKVSEQ---RPGTPGPPPPEGAQGDGCRG 198
+ P + P PGPP P G G+G G
Sbjct: 856 QGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPG 888
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRG----AGAARAS 54
G+ G GD PG PGIP GP G G G+ G G G RG G +
Sbjct: 576 GSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEA 635
Query: 55 GPRGGAPRGPHGGA 68
GP G +G G A
Sbjct: 636 GPPGSGEKGERGAA 649
Score = 42.0 bits (97), Expect = 4e-04
Identities = 58/206 (28%), Positives = 66/206 (32%), Gaps = 50/206 (24%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRG----A 48
GT G G PG PG P GP G G PG GA G GP G
Sbjct: 791 GTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQ 850
Query: 49 GAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRI 108
GP G P GP G + G P G R P L P S +E
Sbjct: 851 EVLNLQGPPG--PPGPRGPPGPSIPG--PPGPRGPPGEGLPGPPGPPGSFLSNSE---TF 903
Query: 109 LSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDL 168
LS P P P D G R G + G+ +S G +
Sbjct: 904 LSGPPGP-PGPPGPKGDQGPPG----------PRGHQGEQGLPGFSTSGSSSFGLNLQ-- 950
Query: 169 RTPKHKVSEQRPGTPGPPPPEGAQGD 194
G PGPP P+G +GD
Sbjct: 951 ------------GPPGPPGPQGPKGD 964
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 6 QGTGGSTGDA--DGPGGPGIPDGPGGNAG--GP------GEAGATGGRGPRG-AGAARAS 54
+G GS GD +GP G +GP G G GP GE GA G GP G G +
Sbjct: 605 KGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSV 664
Query: 55 GPRGGA----PRGPHG 66
GP+G + P+GP G
Sbjct: 665 GPKGSSGSPGPQGPPG 680
Score = 35.4 bits (80), Expect = 0.035
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGNAGGPGEAGATGGRG 44
G GG+ G+A G GP G GPGG G E G G G
Sbjct: 1322 GAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNG 1360
Score = 35.0 bits (79), Expect = 0.046
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPR 57
G G G G A PG G P G G+ G G +G+ G +GP G G G +
Sbjct: 639 GSGEKGERGAAGEPGPHG-PPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVK 697
Query: 58 GG-APRGPHG 66
G P GP G
Sbjct: 698 GDKGPMGPPG 707
Score = 33.9 bits (76), Expect = 0.10
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG 47
QG G G+ PG G P GP G+ G PG G G +G +G
Sbjct: 1437 QGPPGQKGEMGTPGPKGDRGPAGPPGHPGPPGPRGHKGEKGDKG 1480
Score = 32.7 bits (73), Expect = 0.23
Identities = 48/180 (26%), Positives = 64/180 (35%), Gaps = 32/180 (17%)
Query: 28 GGNAGGPGEAGA----TGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGRCPCG-ARR 82
GG AG G GA G RGP G GP GG GG + G A
Sbjct: 1315 GGGAGSLGAGGAFGEAAGDRGPYGTDI----GPGGGYGAAAEGGMYAGNGGLLGADFAGD 1370
Query: 83 PDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG-----AVLKDFTVSGNLLFMSV 137
D L + ++ S L++ + P +PG + K F+ N+ +
Sbjct: 1371 LDYNELAVRVS---ESMQRQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNVTADLM 1427
Query: 138 RDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSE---QRPGTPGPPPPEGAQGD 194
GA P GQK ++ TP K PG PGPP P G +G+
Sbjct: 1428 DFFQTYGA-----------IQGPPGQKG-EMGTPGPKGDRGPAGPPGHPGPPGPRGHKGE 1475
Score = 32.3 bits (72), Expect = 0.30
Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGA------TGGRGPRG----AGA 50
M+ E GS G G PG P G+ G PG G G +GP+G G
Sbjct: 558 MEQENGNLRGSPGPKGDMGSPG----PKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGD 613
Query: 51 ARASGPRG----GAPRGPHGGAASAQDG 74
GP G P GP G A G
Sbjct: 614 PGMEGPMGQRGREGPMGPRGEAGPPGSG 641
Score = 31.6 bits (70), Expect = 0.51
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 22 GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGRCPCGAR 81
G GP G G G G G RGP AG GP G PRG H G + + G R
Sbjct: 1434 GAIQGPPGQKGEMGTPGPKGDRGP--AGPPGHPGPPG--PRG-HKGEKGDKGDQVYAGRR 1488
Query: 82 R 82
R
Sbjct: 1489 R 1489
Score = 30.0 bits (66), Expect = 1.5
Identities = 54/188 (28%), Positives = 72/188 (38%), Gaps = 53/188 (28%)
Query: 44 GPRGAGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSR-LLQLHIT------MPF 96
G G G + G GGA GP G A + CPCG+ + LL L +T + F
Sbjct: 428 GSSGGGGSGGGGGVGGAGGGPWGPAPAW----CPCGSCCSWWKWLLGLLLTWLLLLGLLF 483
Query: 97 SSPMEAELVRRI---------LSRDAAPL----------------PRPGAVLKDFTV--- 128
AE VR++ + R P P GA L +
Sbjct: 484 GLIALAEEVRKLKARVDELERIRRSILPYGDSMDRIEKDRLQGMAPAAGADLDKIGLHSD 543
Query: 129 SGNLLFMSVRDQ---DREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGTPGP 185
S L+M VR + ++E G +R GS P+G D+ +P K PGTPG
Sbjct: 544 SQEELWMFVRKKLMMEQEN-GNLR------GSPGPKG----DMGSPGPKGDRGFPGTPGI 592
Query: 186 PPPEGAQG 193
P P G G
Sbjct: 593 PGPLGHPG 600
Score = 27.3 bits (59), Expect = 9.6
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 18/64 (28%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS---------------GPRGGAPR 62
PG PG P GP G G PG +GA + + R+ GP G P
Sbjct: 1214 PGPPG-PPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPG--PP 1270
Query: 63 GPHG 66
GP G
Sbjct: 1271 GPQG 1274
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 54.7 bits (130), Expect = 6e-08
Identities = 34/74 (45%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR----ASGPRG--GA 60
G G+ G+ DG GP P GP G AGGPG GA G +G G AR A GPRG G
Sbjct: 339 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 397
Query: 61 PRGPHGGAASAQDG 74
P P AS G
Sbjct: 398 PGSPGPAGASGNPG 411
Score = 53.5 bits (127), Expect = 1e-07
Identities = 61/202 (30%), Positives = 72/202 (35%), Gaps = 39/202 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP+G
Sbjct: 1055 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1113
Query: 60 APRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRP 119
PRG G A + G R + L L P + + + P P
Sbjct: 1114 -PRGDKGEA--GEPGERGLKGHRGFTGLQGL----PGPPGPSGDQGASGPAGPSGPRGPP 1166
Query: 120 GAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQR 179
G V ++GA + G P G + R T
Sbjct: 1167 G---------------PVGPSGKDGANGIP------GPIGPPGPRGRSGETG----PAGP 1201
Query: 180 PGTPGPPPPEGAQGDGCRGVAF 201
PG PGPP P G G G AF
Sbjct: 1202 PGNPGPPGPPGPPGPGIDMSAF 1223
Score = 52.0 bits (123), Expect = 4e-07
Identities = 38/84 (45%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG- 58
QG G GDA PG GP GP G G G GA G +GP GA GAA GP G
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Query: 59 -GAPRGPHGGAASAQDGRCPCGAR 81
G P P S +DG P GAR
Sbjct: 911 NGNPGPPGPPGPSGKDG--PKGAR 932
Score = 49.7 bits (117), Expect = 2e-06
Identities = 39/91 (42%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-----G 59
QG G++GD GP GP P G G AG PG G+ G GP G GAA G RG G
Sbjct: 1007 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 1065
Query: 60 AP--RGPHG-----GAASAQDGRCPCGARRP 83
AP GP G G Q R GA+ P
Sbjct: 1066 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Score = 49.3 bits (116), Expect = 2e-06
Identities = 64/212 (30%), Positives = 76/212 (35%), Gaps = 50/212 (23%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGA-------GAARASG 55
G G G G+ PG G P DG G G PGE G +G GP+GA G G
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 558
Query: 56 PRG--GAP--RGPHG----GAASAQDGR----CPCGARRPDSRLLQLHITMPFSSPMEAE 103
RG G P GP G A +DGR P GAR M F P A
Sbjct: 559 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG-------VMGFPGPKGAN 611
Query: 104 LVRRILSRDAAPLPRPG-AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEG 162
PG A K + L + +D + AG G A P G
Sbjct: 612 -------------GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP-------GPAGPAG 651
Query: 163 QKARDLRTPKHKVSEQRPGTPGPPPPEGAQGD 194
++ + P + PG PGPP G GD
Sbjct: 652 ERG-EQGAPGPSGFQGLPGPPGPPGEGGKPGD 682
Score = 48.5 bits (114), Expect = 4e-06
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPR 57
A+G+ G G G++ PG G P GP G G PGE G TG G GA G +GP
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 356
Query: 58 GGAPRGPHG-----GAASAQDGRCPCGARRPD 84
G P GP G GA A+ P GAR P+
Sbjct: 357 G--PVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Score = 48.1 bits (113), Expect = 5e-06
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGG---RGPRG-AGAARASGPRGGA 60
G GG GD PG G P GP G G PGE G+ G +GPRG G GP+G +
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734
Query: 61 -PRGPHG 66
P GP G
Sbjct: 735 GPAGPPG 741
Score = 47.4 bits (111), Expect = 9e-06
Identities = 36/87 (41%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 2 QAEGQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A QG G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1090 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1149
Query: 50 AARASGPRG-GAPRGPHGGAA-SAQDG 74
ASGP G PRGP G S +DG
Sbjct: 1150 DQGASGPAGPSGPRGPPGPVGPSGKDG 1176
Score = 47.0 bits (110), Expect = 1e-05
Identities = 39/94 (41%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG----------AGAARA 53
QG G +G PG PG P G G+ G PGEAGA G GPRG GA
Sbjct: 656 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 715
Query: 54 SGPRG--GAP--RGPHGGAASAQDGRCPCGARRP 83
GPRG G P GP G + A P GA+ P
Sbjct: 716 QGPRGLPGTPGTDGPKGASGPAG----PPGAQGP 745
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
GT G G A GP GP GP G G PGE GA G GP+G G GP GAP G
Sbjct: 726 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP-GKD 782
Query: 66 GG 67
GG
Sbjct: 783 GG 784
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-A 60
A +G G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 815 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 61 PRGPHG--GAASAQDGRCPCGA 80
P+GP G G A+ + P GA
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGA 895
Score = 44.3 bits (103), Expect = 8e-05
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPHG 66
G G GP GP P GP G AG PG G G G P G + GPRG P GP G
Sbjct: 193 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRG--PPGPPG 249
Score = 44.3 bits (103), Expect = 8e-05
Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 6 QGTGGSTG-----DADGPGG-PGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARA 53
+G G TG A GP G PG P GP G +G PG G G +G G AGA
Sbjct: 374 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 433
Query: 54 SGPRGGAPRGPHG 66
GPRG P GP G
Sbjct: 434 PGPRG--PPGPQG 444
Score = 44.3 bits (103), Expect = 8e-05
Identities = 32/83 (38%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA-----ARASGPRGGA 60
QG G+TG G G P G GN G PG G +G GP+GA RA P
Sbjct: 890 QGPPGATGFPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 61 PRGPHGGAASAQDGRCPCGARRP 83
P GP G D P GA P
Sbjct: 949 PAGPPGEKGEPGDDG-PSGAEGP 970
Score = 43.9 bits (102), Expect = 1e-04
Identities = 59/206 (28%), Positives = 73/206 (35%), Gaps = 45/206 (21%)
Query: 6 QGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 51 ARASGPRG-GAPRGPHGGAASAQDGRCPCGARRPDSRLL--QLHITMPFSSPMEAELVRR 107
A GP G RG G P P +R Q + P +P E
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE------ 532
Query: 108 ILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARD 167
R + L P D G G R + G A P+G+
Sbjct: 533 ---RGPSGLAGPKGANGDPGRPG-----------EPGLPGARGLTGRPGDAGPQGKVG-- 576
Query: 168 LRTPKHKVSEQRPGTPGPPPPEGAQG 193
P E G PGPP P+GA+G
Sbjct: 577 ---PSGAPGED--GRPGPPGPQGARG 597
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G GG G+ P GP G AG GE G G GP G AGA A G RG P
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Query: 63 GPHGGA 68
GP G A
Sbjct: 831 GPAGFA 836
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G G G PG+P GP G G G GA+G RGP G G +GP G G
Sbjct: 980 RGIVGLPGQRGERGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038
Query: 60 AP--RGPHG--GAASAQDGRCPCGA 80
+P GP G GAA + R GA
Sbjct: 1039 SPGADGPPGRDGAAGVKGDRGETGA 1063
Score = 42.4 bits (98), Expect = 3e-04
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-------------AGA 50
QG G G PG G P G GN G PGE G +G GPRG AG
Sbjct: 200 QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGK 259
Query: 51 ARASGPRGGAPRGPHG 66
+G RG P GP G
Sbjct: 260 PGKAGERG--PPGPQG 273
Score = 42.4 bits (98), Expect = 3e-04
Identities = 32/73 (43%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G GD DGP G P GP G AG G G G RG RG GA A
Sbjct: 954 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 54 SGPRGGAPRGPHG 66
SG RG P GP G
Sbjct: 1013 SGDRG--PPGPVG 1023
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGP 64
+G G+ G DGP G P GP G G PG G G RG AG A G RG +GP
Sbjct: 719 RGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERG--AAGIAGPKGDRGDVGEKGP 775
Query: 65 HGGAASAQDG 74
G A +DG
Sbjct: 776 EG--APGKDG 783
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG DG G G PG G G GP G G A+ GG
Sbjct: 131 QGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK 190
Query: 64 PHGGAASAQDGRC-PCGARRP 83
G G P G R P
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGP 211
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPRGGA 60
QG G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 283
Query: 61 P 61
P
Sbjct: 284 P 284
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G GD GP P GP G AG G G G +G +GA R G P P
Sbjct: 103 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP 161
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G TG GP GP +G G G PG AG+ G RG G G A +GP G
Sbjct: 783 GGRGLTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 841
Query: 59 -GAP--RGPHGGAASAQDGRCP 77
G P +G G A D P
Sbjct: 842 DGQPGAKGEQGEAGQKGDAGAP 863
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/94 (37%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPRG- 58
+G G G A PG GP P G G G G +GA G GP+G R G RG
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 59 ----GAPRGPHG-----GAASAQDGRCPCGARRP 83
G P GP G GA A R P G P
Sbjct: 992 RGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGP 1024
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN---AGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G D GP GP P GP G G G+ G G GPRG G GP G
Sbjct: 106 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 165
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 166 --PPGPPG 171
Score = 39.3 bits (90), Expect = 0.002
Identities = 56/192 (29%), Positives = 67/192 (34%), Gaps = 35/192 (18%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+A PG G P GP G G PG G G +G RG + GAP G
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-GV 307
Query: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR--PGAV 122
G + S + P G P L + P A R D P P PG V
Sbjct: 308 KGESGSPGENGSP-GPMGPRG----LPGERGRTGPAGAAGAR---GNDGQPGPAGPPGPV 359
Query: 123 LKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGT 182
+G F GA + G+ PEG + PGT
Sbjct: 360 ----GPAGGPGF--------PGAPGAKGEAGPTGARGPEGAQG----------PRGEPGT 397
Query: 183 PGPPPPEGAQGD 194
PG P P GA G+
Sbjct: 398 PGSPGPAGASGN 409
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
+G G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 698 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 753
Query: 64 PHG--GAASAQDGRCPCGARRPD 84
G G A + R G + P+
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPE 776
Score = 37.7 bits (86), Expect = 0.007
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--GP----GEAGATGGRGPRG-AGAARASGPRGG 59
G+ G+ G GP GP DGP G G GP GE G G GP G G GP G
Sbjct: 909 GSNGNPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 967
Query: 60 -APRGPHG 66
P GP G
Sbjct: 968 EGPPGPQG 975
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/65 (41%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--G 59
A G G G PG GP G G G AG G RG RG G A GPRG G
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 153
Query: 60 APRGP 64
P P
Sbjct: 154 EPGTP 158
Score = 36.2 bits (82), Expect = 0.021
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G+ PG PG+ P GP G AG GE GA G G +G
Sbjct: 612 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 671
Query: 53 ASGPRGGAPRGPHG--GAASAQDGRCPCGAR 81
GG P G G G A A P G R
Sbjct: 672 GPPGEGGKP-GDQGVPGEAGAPGLVGPRGER 701
Score = 35.8 bits (81), Expect = 0.027
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGPH 65
G G GD G G P+G G GG G G G GP G A+G +G P GP
Sbjct: 759 GIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPIGPPGPAG-----ANGEKGEVGPPGPA 812
Query: 66 GGAAS 70
G A +
Sbjct: 813 GSAGA 817
Score = 34.3 bits (77), Expect = 0.079
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGGAPR 62
G + G G+ GP G G G G G GP+G G SGP G PR
Sbjct: 185 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG--PR 242
Query: 63 GPHG 66
GP G
Sbjct: 243 GPPG 246
Score = 34.3 bits (77), Expect = 0.079
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG----AARASGPRGGAP 61
G G G GP GP G G AG PG G G GP G G A GPR P
Sbjct: 1176 GANGIPGPI-GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 33.5 bits (75), Expect = 0.13
Identities = 30/88 (34%), Positives = 31/88 (35%), Gaps = 28/88 (31%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGE---AGATGGRGPRGA------- 48
G G G A GPG PG P G G G G G G GP GA
Sbjct: 354 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 413
Query: 49 ------GAARASGPRGG----APRGPHG 66
G+A A G G PRGP G
Sbjct: 414 GIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 54.7 bits (130), Expect = 6e-08
Identities = 34/74 (45%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR----ASGPRG--GA 60
G G+ G+ DG GP P GP G AGGPG GA G +G G AR A GPRG G
Sbjct: 270 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 328
Query: 61 PRGPHGGAASAQDG 74
P P AS G
Sbjct: 329 PGSPGPAGASGNPG 342
Score = 53.5 bits (127), Expect = 1e-07
Identities = 61/202 (30%), Positives = 72/202 (35%), Gaps = 39/202 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP+G
Sbjct: 986 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1044
Query: 60 APRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRP 119
PRG G A + G R + L L P + + + P P
Sbjct: 1045 -PRGDKGEA--GEPGERGLKGHRGFTGLQGL----PGPPGPSGDQGASGPAGPSGPRGPP 1097
Query: 120 GAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQR 179
G V ++GA + G P G + R T
Sbjct: 1098 G---------------PVGPSGKDGANGIP------GPIGPPGPRGRSGETG----PAGP 1132
Query: 180 PGTPGPPPPEGAQGDGCRGVAF 201
PG PGPP P G G G AF
Sbjct: 1133 PGNPGPPGPPGPPGPGIDMSAF 1154
Score = 52.0 bits (123), Expect = 4e-07
Identities = 38/84 (45%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG- 58
QG G GDA PG GP GP G G G GA G +GP GA GAA GP G
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Query: 59 -GAPRGPHGGAASAQDGRCPCGAR 81
G P P S +DG P GAR
Sbjct: 842 NGNPGPPGPPGPSGKDG--PKGAR 863
Score = 49.7 bits (117), Expect = 2e-06
Identities = 39/91 (42%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-----G 59
QG G++GD GP GP P G G AG PG G+ G GP G GAA G RG G
Sbjct: 938 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 996
Query: 60 AP--RGPHG-----GAASAQDGRCPCGARRP 83
AP GP G G Q R GA+ P
Sbjct: 997 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Score = 49.3 bits (116), Expect = 2e-06
Identities = 64/212 (30%), Positives = 76/212 (35%), Gaps = 50/212 (23%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGA-------GAARASG 55
G G G G+ PG G P DG G G PGE G +G GP+GA G G
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 489
Query: 56 PRG--GAP--RGPHG----GAASAQDGR----CPCGARRPDSRLLQLHITMPFSSPMEAE 103
RG G P GP G A +DGR P GAR M F P A
Sbjct: 490 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG-------VMGFPGPKGAN 542
Query: 104 LVRRILSRDAAPLPRPG-AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEG 162
PG A K + L + +D + AG G A P G
Sbjct: 543 -------------GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP-------GPAGPAG 582
Query: 163 QKARDLRTPKHKVSEQRPGTPGPPPPEGAQGD 194
++ + P + PG PGPP G GD
Sbjct: 583 ERG-EQGAPGPSGFQGLPGPPGPPGEGGKPGD 613
Score = 48.5 bits (114), Expect = 4e-06
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPR 57
A+G+ G G G++ PG G P GP G G PGE G TG G GA G +GP
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 287
Query: 58 GGAPRGPHG-----GAASAQDGRCPCGARRPD 84
G P GP G GA A+ P GAR P+
Sbjct: 288 G--PVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Score = 48.1 bits (113), Expect = 5e-06
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGG---RGPRG-AGAARASGPRGGA 60
G GG GD PG G P GP G G PGE G+ G +GPRG G GP+G +
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665
Query: 61 -PRGPHG 66
P GP G
Sbjct: 666 GPAGPPG 672
Score = 47.4 bits (111), Expect = 9e-06
Identities = 36/87 (41%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 2 QAEGQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A QG G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1021 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1080
Query: 50 AARASGPRG-GAPRGPHGGAA-SAQDG 74
ASGP G PRGP G S +DG
Sbjct: 1081 DQGASGPAGPSGPRGPPGPVGPSGKDG 1107
Score = 47.0 bits (110), Expect = 1e-05
Identities = 39/94 (41%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG----------AGAARA 53
QG G +G PG PG P G G+ G PGEAGA G GPRG GA
Sbjct: 587 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 646
Query: 54 SGPRG--GAP--RGPHGGAASAQDGRCPCGARRP 83
GPRG G P GP G + A P GA+ P
Sbjct: 647 QGPRGLPGTPGTDGPKGASGPAG----PPGAQGP 676
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
GT G G A GP GP GP G G PGE GA G GP+G G GP GAP G
Sbjct: 657 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP-GKD 713
Query: 66 GG 67
GG
Sbjct: 714 GG 715
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-A 60
A +G G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 746 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 61 PRGPHG--GAASAQDGRCPCGA 80
P+GP G G A+ + P GA
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGA 826
Score = 44.3 bits (103), Expect = 8e-05
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPHG 66
G G GP GP P GP G AG PG G G G P G + GPRG P GP G
Sbjct: 124 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRG--PPGPPG 180
Score = 44.3 bits (103), Expect = 8e-05
Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 6 QGTGGSTG-----DADGPGG-PGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARA 53
+G G TG A GP G PG P GP G +G PG G G +G G AGA
Sbjct: 305 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 364
Query: 54 SGPRGGAPRGPHG 66
GPRG P GP G
Sbjct: 365 PGPRG--PPGPQG 375
Score = 44.3 bits (103), Expect = 8e-05
Identities = 32/83 (38%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA-----ARASGPRGGA 60
QG G+TG G G P G GN G PG G +G GP+GA RA P
Sbjct: 821 QGPPGATGFPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879
Query: 61 PRGPHGGAASAQDGRCPCGARRP 83
P GP G D P GA P
Sbjct: 880 PAGPPGEKGEPGDDG-PSGAEGP 901
Score = 43.9 bits (102), Expect = 1e-04
Identities = 59/206 (28%), Positives = 73/206 (35%), Gaps = 45/206 (21%)
Query: 6 QGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 51 ARASGPRG-GAPRGPHGGAASAQDGRCPCGARRPDSRLL--QLHITMPFSSPMEAELVRR 107
A GP G RG G P P +R Q + P +P E
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE------ 463
Query: 108 ILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARD 167
R + L P D G G R + G A P+G+
Sbjct: 464 ---RGPSGLAGPKGANGDPGRPG-----------EPGLPGARGLTGRPGDAGPQGKVG-- 507
Query: 168 LRTPKHKVSEQRPGTPGPPPPEGAQG 193
P E G PGPP P+GA+G
Sbjct: 508 ---PSGAPGED--GRPGPPGPQGARG 528
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G GG G+ P GP G AG GE G G GP G AGA A G RG P
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Query: 63 GPHGGA 68
GP G A
Sbjct: 762 GPAGFA 767
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G G G PG+P GP G G G GA+G RGP G G +GP G G
Sbjct: 911 RGIVGLPGQRGERGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969
Query: 60 AP--RGPHG--GAASAQDGRCPCGA 80
+P GP G GAA + R GA
Sbjct: 970 SPGADGPPGRDGAAGVKGDRGETGA 994
Score = 42.4 bits (98), Expect = 3e-04
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-------------AGA 50
QG G G PG G P G GN G PGE G +G GPRG AG
Sbjct: 131 QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGK 190
Query: 51 ARASGPRGGAPRGPHG 66
+G RG P GP G
Sbjct: 191 PGKAGERG--PPGPQG 204
Score = 42.4 bits (98), Expect = 3e-04
Identities = 32/73 (43%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G GD DGP G P GP G AG G G G RG RG GA A
Sbjct: 885 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 54 SGPRGGAPRGPHG 66
SG RG P GP G
Sbjct: 944 SGDRG--PPGPVG 954
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGP 64
+G G+ G DGP G P GP G G PG G G RG AG A G RG +GP
Sbjct: 650 RGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERG--AAGIAGPKGDRGDVGEKGP 706
Query: 65 HGGAASAQDG 74
G A +DG
Sbjct: 707 EG--APGKDG 714
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG DG G G PG G G GP G G A+ GG
Sbjct: 62 QGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK 121
Query: 64 PHGGAASAQDGRC-PCGARRP 83
G G P G R P
Sbjct: 122 AGGAQLGVMQGPMGPMGPRGP 142
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPRGGA 60
QG G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 214
Query: 61 P 61
P
Sbjct: 215 P 215
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G GD GP P GP G AG G G G +G +GA R G P P
Sbjct: 34 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP 92
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G TG GP GP +G G G PG AG+ G RG G G A +GP G
Sbjct: 714 GGRGLTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 772
Query: 59 -GAP--RGPHGGAASAQDGRCP 77
G P +G G A D P
Sbjct: 773 DGQPGAKGEQGEAGQKGDAGAP 794
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/94 (37%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPRG- 58
+G G G A PG GP P G G G G +GA G GP+G R G RG
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 59 ----GAPRGPHG-----GAASAQDGRCPCGARRP 83
G P GP G GA A R P G P
Sbjct: 923 RGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGP 955
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN---AGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G D GP GP P GP G G G+ G G GPRG G GP G
Sbjct: 37 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 96
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 97 --PPGPPG 102
Score = 39.3 bits (90), Expect = 0.002
Identities = 56/192 (29%), Positives = 67/192 (34%), Gaps = 35/192 (18%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+A PG G P GP G G PG G G +G RG + GAP G
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-GV 238
Query: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR--PGAV 122
G + S + P G P L + P A R D P P PG V
Sbjct: 239 KGESGSPGENGSP-GPMGPRG----LPGERGRTGPAGAAGAR---GNDGQPGPAGPPGPV 290
Query: 123 LKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGT 182
+G F GA + G+ PEG + PGT
Sbjct: 291 ----GPAGGPGF--------PGAPGAKGEAGPTGARGPEGAQG----------PRGEPGT 328
Query: 183 PGPPPPEGAQGD 194
PG P P GA G+
Sbjct: 329 PGSPGPAGASGN 340
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
+G G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 629 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 684
Query: 64 PHG--GAASAQDGRCPCGARRPD 84
G G A + R G + P+
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPE 707
Score = 37.7 bits (86), Expect = 0.007
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--GP----GEAGATGGRGPRG-AGAARASGPRGG 59
G+ G+ G GP GP DGP G G GP GE G G GP G G GP G
Sbjct: 840 GSNGNPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 898
Query: 60 -APRGPHG 66
P GP G
Sbjct: 899 EGPPGPQG 906
Score = 36.2 bits (82), Expect = 0.021
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G+ PG PG+ P GP G AG GE GA G G +G
Sbjct: 543 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 602
Query: 53 ASGPRGGAPRGPHG--GAASAQDGRCPCGAR 81
GG P G G G A A P G R
Sbjct: 603 GPPGEGGKP-GDQGVPGEAGAPGLVGPRGER 632
Score = 35.8 bits (81), Expect = 0.027
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGPH 65
G G GD G G P+G G GG G G G GP G A+G +G P GP
Sbjct: 690 GIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPIGPPGPAG-----ANGEKGEVGPPGPA 743
Query: 66 GGAAS 70
G A +
Sbjct: 744 GSAGA 748
Score = 34.3 bits (77), Expect = 0.079
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGGAPR 62
G + G G+ GP G G G G G GP+G G SGP G PR
Sbjct: 116 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG--PR 173
Query: 63 GPHG 66
GP G
Sbjct: 174 GPPG 177
Score = 34.3 bits (77), Expect = 0.079
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG----AARASGPRGGAP 61
G G G GP GP G G AG PG G G GP G G A GPR P
Sbjct: 1107 GANGIPGPI-GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 33.5 bits (75), Expect = 0.13
Identities = 30/88 (34%), Positives = 31/88 (35%), Gaps = 28/88 (31%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGE---AGATGGRGPRGA------- 48
G G G A GPG PG P G G G G G G GP GA
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 49 ------GAARASGPRGG----APRGPHG 66
G+A A G G PRGP G
Sbjct: 345 GIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
>gi|24430137 L antigen family, member 3 [Homo sapiens]
Length = 143
Score = 54.3 bits (129), Expect = 7e-08
Identities = 47/121 (38%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR----GPHGGAASAQDGRCPCGA 80
D GG GG G GG RG G A+ P GGAP GP AASA G
Sbjct: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASAARG----SR 57
Query: 81 RRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQ 140
RP L ++PF +P+EAE+ L+ DA P R V KD TVSG +L + + +
Sbjct: 58 MRPHIFTL----SVPFPTPLEAEIAHGSLAPDAEPHQR--VVGKDLTVSGRILVVRWKAE 111
Query: 141 D 141
D
Sbjct: 112 D 112
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 52.4 bits (124), Expect = 3e-07
Identities = 38/85 (44%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG- 58
QG G GD G GIP PG G G PG AG G GP G GA A+GP G
Sbjct: 207 QGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGE 266
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
PRGP G A D P G R P
Sbjct: 267 EGPRGPPGRAGEKGDEGSP-GIRGP 290
Score = 43.9 bits (102), Expect = 1e-04
Identities = 35/87 (40%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
QA G+ G G A PG PG GP G+ G PG G G GP G GPRG
Sbjct: 323 QAGQPGSPGHQGLAGVPGQPGTKGGP-GDQGEPGPQGLPGFSGP--PGKEGEPGPRGEI- 378
Query: 62 RGPHG--GAASAQDGRCPCGARRPDSR 86
GP G G Q R P G P R
Sbjct: 379 -GPQGIMGQKGDQGERGPVGQPGPQGR 404
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
A+ +G G G PG PG+P DG G+ G PG+AG G +G G A GP G
Sbjct: 23 AQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGE--PGKAGPDGPDG 78
Score = 40.0 bits (92), Expect = 0.001
Identities = 53/190 (27%), Positives = 67/190 (35%), Gaps = 25/190 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G G PG P GP G+AG PG G G GPRG R G P P
Sbjct: 460 GEPGPKGQQGVRGEPGYP-GPSGDAGAPGVQGYPGPPGPRGLAGNR------GVPGQP-- 510
Query: 67 GAASAQDGRCPCGARRPDSRLLQLH---ITMPFSSPMEAELVRRILSRDAAPLPRPGAVL 123
+GR D L L + S+ EA ++ P P PG
Sbjct: 511 -GRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGP-PGYPG 568
Query: 124 KDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGTP 183
K R G + VG +G+ P+G++ + +V PG P
Sbjct: 569 KQGPHG--------HPGPRGVPGIVGAVG-QIGNTGPKGKRGE--KGDPGEVGRGHPGMP 617
Query: 184 GPPPPEGAQG 193
GPP G G
Sbjct: 618 GPPGIPGLPG 627
Score = 39.3 bits (90), Expect = 0.002
Identities = 51/191 (26%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G PG G PDGP G G G GA G GP G + G P P
Sbjct: 57 GKAGPPGPKGEPGKAG-PDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP 115
Query: 67 GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG--AVLK 124
G A P G P ++ I P P S P +PG ++
Sbjct: 116 GFAG------PPGPPGPVGLPGEIGIRGPKGDPGPDG-----PSGPPGPPGKPGRPGTIQ 164
Query: 125 DFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRT-PKHKV-SEQRPGT 182
S + L + +G ++ V G G + PK V + G
Sbjct: 165 GLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGI 224
Query: 183 PGPPPPEGAQG 193
PGPP P+G +G
Sbjct: 225 PGPPGPQGIRG 235
Score = 38.5 bits (88), Expect = 0.004
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G+TG +GP GP G G+ G PG G G GP+GA + G P P
Sbjct: 256 GAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTP 315
Query: 65 HGGAASAQDGR 75
++ Q G+
Sbjct: 316 GMKGSAGQAGQ 326
Score = 37.7 bits (86), Expect = 0.007
Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG----GAPRGPHG 66
GP G P GP G G PG G G GP G A GP+G P GP G
Sbjct: 27 GPPGERGPPGPPGPPGVPGSDGIDGDNGP--PGKAGPPGPKGEPGKAGPDGPDG 78
Score = 36.6 bits (83), Expect = 0.016
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG---- 58
G G G G PGIP GP G G G+ G+ G GPRG G A G +G
Sbjct: 400 GPQGRQGPKGEQGPPGIP-GPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGE 458
Query: 59 -GAPRGPHG 66
G P GP G
Sbjct: 459 SGEP-GPKG 466
Score = 36.6 bits (83), Expect = 0.016
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 5 GQGTGGSTGDADGPGGPGIP-------DGPGGNAGGPGEAGATGGRGPRG 47
G+G G G PG PG P DG G+ G PGEAG G GP G
Sbjct: 610 GRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVG 659
Score = 34.7 bits (78), Expect = 0.060
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 21/80 (26%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPG------------------EAGATGGRGPR 46
GT G GD PG G+P GP G G PG E G G GP+
Sbjct: 343 GTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQ 402
Query: 47 GAGAARASGPRGGAPRGPHG 66
G + G P GP G
Sbjct: 403 GRQGPKGEQGPPGIP-GPQG 421
Score = 34.7 bits (78), Expect = 0.060
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--G 59
G G G PG G+P G GN G G+ G G G G G GP G G
Sbjct: 565 GYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPG 624
Query: 60 APRGPHGGAASAQDG 74
P P G A + +DG
Sbjct: 625 LPGRP-GQAINGKDG 638
Score = 33.1 bits (74), Expect = 0.18
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G TG G PGI DG G G G AG G G G AG G +GG
Sbjct: 288 RGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGG 347
Query: 60 ----APRGPHG 66
GP G
Sbjct: 348 PGDQGEPGPQG 358
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
QG G GD G G P GP G G PG G G G +G G+ +GPRG
Sbjct: 381 QGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRG 439
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPR---GAGA-ARASGPRGGA 60
GQ G GD PG PG G G PG G G P GA A A A G+
Sbjct: 630 GQAINGKDGDRGSPGAPG----EAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGS 685
Query: 61 PRGP 64
+GP
Sbjct: 686 IKGP 689
Score = 30.0 bits (66), Expect = 1.5
Identities = 28/94 (29%), Positives = 31/94 (32%), Gaps = 33/94 (35%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-------------------GNAGGPGEAGATGGRGPR 46
+G G G + PG PG P PG G G PG G G G R
Sbjct: 139 KGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKR 198
Query: 47 G-------------AGAARASGPRG-GAPRGPHG 66
G G ASG +G P GP G
Sbjct: 199 GILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQG 232
Score = 29.3 bits (64), Expect = 2.5
Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 7 GTGGSTGDADGPG--GP-GI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G GD PG GP GI P G G G PG G G G G +
Sbjct: 274 GRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQ 333
Query: 56 PRGGAPRGP 64
G P P
Sbjct: 334 GLAGVPGQP 342
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 52.0 bits (123), Expect = 4e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1402 GKTGPVGPQGPA 1413
Score = 48.9 bits (115), Expect = 3e-06
Identities = 70/211 (33%), Positives = 82/211 (38%), Gaps = 34/211 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 984 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 1042
Query: 62 -RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR 118
RG G GA + G P G P SP E R + A P+
Sbjct: 1043 ERGLPGAQGAPGLKGGEGPQGP------------PGPVGSPGE-----RGSAGTAGPIGL 1085
Query: 119 PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG-WGL-GSASPEGQKARD-----LRT 170
PG + ++ +G AGR V G GL G A P G D +
Sbjct: 1086 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE 1145
Query: 171 PKHKVSEQRPGTPGPPPPEGAQGD-GCRGVA 200
P K S+ G GPP P G QG G G+A
Sbjct: 1146 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIA 1176
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1382 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1441
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1442 PPG--PMGPPG 1450
Score = 45.8 bits (107), Expect = 3e-05
Identities = 60/197 (30%), Positives = 70/197 (35%), Gaps = 36/197 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 1044 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1102
Query: 60 AP--RGPHGGAASAQDG-RCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPL 116
AP +GP G A +DG + P G P P SP E D +
Sbjct: 1103 APGEKGPQGPA--GRDGVQGPVGLPGPAG---------PAGSPGE--------DGDKGEI 1143
Query: 117 PRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVS 176
PG N +G + G G P GQ+ K
Sbjct: 1144 GEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMF----GQKGD 1196
Query: 177 EQRPGTPGPPPPEGAQG 193
E G PGPP P G QG
Sbjct: 1197 EGARGFPGPPGPIGLQG 1213
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1262 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1321
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1322 PVGFPGDPGPPGEPGPAGQDG 1342
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 891 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 948
Query: 63 GPHG 66
GP G
Sbjct: 949 GPPG 952
Score = 41.6 bits (96), Expect = 5e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1188 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1243
Query: 64 PHG 66
P+G
Sbjct: 1244 PNG 1246
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 557 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 616
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 617 LPGLPGDKGHRGERGPQG 634
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 705 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 763
Query: 64 PHG 66
P G
Sbjct: 764 PQG 766
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1293 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1352
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1392
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1491 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1548
Query: 63 GPHG 66
GP G
Sbjct: 1549 GPPG 1552
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1485 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1542
Query: 63 GPHG 66
GP G
Sbjct: 1543 GPPG 1546
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 616 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 675
Query: 62 RGP 64
P
Sbjct: 676 GQP 678
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 875 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 932
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 933 QG--PQGPVG 940
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 920
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 921 DGPPGPPGERGPQGPQG 937
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1357 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1416
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDG 1441
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 627 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 686
Query: 62 RGPHG 66
GP G
Sbjct: 687 PGPKG 691
Score = 37.7 bits (86), Expect = 0.007
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 933 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 989
Query: 65 HG 66
G
Sbjct: 990 TG 991
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 595
Query: 71 AQDGR 75
A GR
Sbjct: 596 ADGGR 600
Score = 36.6 bits (83), Expect = 0.016
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 696 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 748
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 749 KEGQSGEKGA 758
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1431 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1488
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1489 GTQGSPGAKGDGGIP 1503
Score = 35.8 bits (81), Expect = 0.027
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 669 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 728
Query: 57 RG 58
+G
Sbjct: 729 QG 730
Score = 35.8 bits (81), Expect = 0.027
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 807 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 866 STGFPGFPGANGEKGARGVAGKPGP 890
Score = 35.8 bits (81), Expect = 0.027
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 915 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 974
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 975 PGPGGVVGPQG 985
Score = 34.7 bits (78), Expect = 0.060
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 661 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716
Query: 62 RGPHG 66
+GP G
Sbjct: 717 QGPIG 721
Score = 34.3 bits (77), Expect = 0.079
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1455 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1514
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1515 PGLPGPQGPKGNKGS 1529
Score = 33.9 bits (76), Expect = 0.10
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 750 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 808
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 809 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 836
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 726 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 784
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 636
Query: 63 GPHG 66
GP G
Sbjct: 637 GPPG 640
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 783 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 836
Query: 65 HGGAASA 71
G + A
Sbjct: 837 PGPSGQA 843
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 430 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 489
Query: 59 GAP 61
G P
Sbjct: 490 GLP 492
Score = 32.0 bits (71), Expect = 0.39
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 450 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 509
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 510 RYGGDGSKGPTISAQEAQ 527
Score = 32.0 bits (71), Expect = 0.39
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 745 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Score = 27.7 bits (60), Expect = 7.4
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 645 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 703
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 704 QQGNP-GPQG 712
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 52.0 bits (123), Expect = 4e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1351 GKTGPVGPQGPA 1362
Score = 48.9 bits (115), Expect = 3e-06
Identities = 70/211 (33%), Positives = 82/211 (38%), Gaps = 34/211 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 933 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 991
Query: 62 -RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR 118
RG G GA + G P G P SP E R + A P+
Sbjct: 992 ERGLPGAQGAPGLKGGEGPQGP------------PGPVGSPGE-----RGSAGTAGPIGL 1034
Query: 119 PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG-WGL-GSASPEGQKARD-----LRT 170
PG + ++ +G AGR V G GL G A P G D +
Sbjct: 1035 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE 1094
Query: 171 PKHKVSEQRPGTPGPPPPEGAQGD-GCRGVA 200
P K S+ G GPP P G QG G G+A
Sbjct: 1095 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIA 1125
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1331 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1390
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1391 PPG--PMGPPG 1399
Score = 45.8 bits (107), Expect = 3e-05
Identities = 60/197 (30%), Positives = 70/197 (35%), Gaps = 36/197 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 993 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1051
Query: 60 AP--RGPHGGAASAQDG-RCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPL 116
AP +GP G A +DG + P G P P SP E D +
Sbjct: 1052 APGEKGPQGPA--GRDGVQGPVGLPGPAG---------PAGSPGE--------DGDKGEI 1092
Query: 117 PRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVS 176
PG N +G + G G P GQ+ K
Sbjct: 1093 GEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMF----GQKGD 1145
Query: 177 EQRPGTPGPPPPEGAQG 193
E G PGPP P G QG
Sbjct: 1146 EGARGFPGPPGPIGLQG 1162
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1211 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1270
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1271 PVGFPGDPGPPGEPGPAGQDG 1291
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 840 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 897
Query: 63 GPHG 66
GP G
Sbjct: 898 GPPG 901
Score = 41.6 bits (96), Expect = 5e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1137 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1192
Query: 64 PHG 66
P+G
Sbjct: 1193 PNG 1195
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 506 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 565
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 566 LPGLPGDKGHRGERGPQG 583
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 654 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 712
Query: 64 PHG 66
P G
Sbjct: 713 PQG 715
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1242 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1301
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1341
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1440 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1497
Query: 63 GPHG 66
GP G
Sbjct: 1498 GPPG 1501
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1434 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1491
Query: 63 GPHG 66
GP G
Sbjct: 1492 GPPG 1495
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 565 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 624
Query: 62 RGP 64
P
Sbjct: 625 GQP 627
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 824 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 881
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 882 QG--PQGPVG 889
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 869
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 870 DGPPGPPGERGPQGPQG 886
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1306 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1365
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDG 1390
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 576 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 635
Query: 62 RGPHG 66
GP G
Sbjct: 636 PGPKG 640
Score = 37.7 bits (86), Expect = 0.007
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 882 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 938
Query: 65 HG 66
G
Sbjct: 939 TG 940
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 544
Query: 71 AQDGR 75
A GR
Sbjct: 545 ADGGR 549
Score = 36.6 bits (83), Expect = 0.016
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 645 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 697
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 698 KEGQSGEKGA 707
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1380 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1437
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1438 GTQGSPGAKGDGGIP 1452
Score = 35.8 bits (81), Expect = 0.027
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 618 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 677
Query: 57 RG 58
+G
Sbjct: 678 QG 679
Score = 35.8 bits (81), Expect = 0.027
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 756 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 815 STGFPGFPGANGEKGARGVAGKPGP 839
Score = 35.8 bits (81), Expect = 0.027
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 864 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 923
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 924 PGPGGVVGPQG 934
Score = 34.7 bits (78), Expect = 0.060
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 610 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665
Query: 62 RGPHG 66
+GP G
Sbjct: 666 QGPIG 670
Score = 34.3 bits (77), Expect = 0.079
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1404 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1463
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1464 PGLPGPQGPKGNKGS 1478
Score = 33.9 bits (76), Expect = 0.10
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 699 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 757
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 758 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 785
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 675 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 733
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 585
Query: 63 GPHG 66
GP G
Sbjct: 586 GPPG 589
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 732 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 785
Query: 65 HGGAASA 71
G + A
Sbjct: 786 PGPSGQA 792
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 379 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 438
Query: 59 GAP 61
G P
Sbjct: 439 GLP 441
Score = 32.0 bits (71), Expect = 0.39
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 399 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 458
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 459 RYGGDGSKGPTISAQEAQ 476
Score = 32.0 bits (71), Expect = 0.39
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 694 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Score = 27.7 bits (60), Expect = 7.4
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 594 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 652
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 653 QQGNP-GPQG 661
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 52.0 bits (123), Expect = 4e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1390 GKTGPVGPQGPA 1401
Score = 48.9 bits (115), Expect = 3e-06
Identities = 70/211 (33%), Positives = 82/211 (38%), Gaps = 34/211 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 972 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 1030
Query: 62 -RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR 118
RG G GA + G P G P SP E R + A P+
Sbjct: 1031 ERGLPGAQGAPGLKGGEGPQGP------------PGPVGSPGE-----RGSAGTAGPIGL 1073
Query: 119 PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG-WGL-GSASPEGQKARD-----LRT 170
PG + ++ +G AGR V G GL G A P G D +
Sbjct: 1074 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGE 1133
Query: 171 PKHKVSEQRPGTPGPPPPEGAQGD-GCRGVA 200
P K S+ G GPP P G QG G G+A
Sbjct: 1134 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIA 1164
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1370 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1429
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1430 PPG--PMGPPG 1438
Score = 45.8 bits (107), Expect = 3e-05
Identities = 60/197 (30%), Positives = 70/197 (35%), Gaps = 36/197 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 1032 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1090
Query: 60 AP--RGPHGGAASAQDG-RCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPL 116
AP +GP G A +DG + P G P P SP E D +
Sbjct: 1091 APGEKGPQGPA--GRDGVQGPVGLPGPAG---------PAGSPGE--------DGDKGEI 1131
Query: 117 PRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVS 176
PG N +G + G G P GQ+ K
Sbjct: 1132 GEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMF----GQKGD 1184
Query: 177 EQRPGTPGPPPPEGAQG 193
E G PGPP P G QG
Sbjct: 1185 EGARGFPGPPGPIGLQG 1201
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1250 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1309
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1310 PVGFPGDPGPPGEPGPAGQDG 1330
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 879 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 936
Query: 63 GPHG 66
GP G
Sbjct: 937 GPPG 940
Score = 41.6 bits (96), Expect = 5e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1176 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1231
Query: 64 PHG 66
P+G
Sbjct: 1232 PNG 1234
Score = 40.8 bits (94), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 545 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 604
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 605 LPGLPGDKGHRGERGPQG 622
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 693 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 751
Query: 64 PHG 66
P G
Sbjct: 752 PQG 754
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1281 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1340
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1380
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1479 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1536
Query: 63 GPHG 66
GP G
Sbjct: 1537 GPPG 1540
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1473 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1530
Query: 63 GPHG 66
GP G
Sbjct: 1531 GPPG 1534
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 604 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 663
Query: 62 RGP 64
P
Sbjct: 664 GQP 666
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 863 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 920
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 921 QG--PQGPVG 928
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 908
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 909 DGPPGPPGERGPQGPQG 925
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1345 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1404
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDG 1429
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 615 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 674
Query: 62 RGPHG 66
GP G
Sbjct: 675 PGPKG 679
Score = 37.7 bits (86), Expect = 0.007
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 921 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 977
Query: 65 HG 66
G
Sbjct: 978 TG 979
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 583
Query: 71 AQDGR 75
A GR
Sbjct: 584 ADGGR 588
Score = 36.6 bits (83), Expect = 0.016
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 684 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 736
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 737 KEGQSGEKGA 746
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1419 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1476
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1477 GTQGSPGAKGDGGIP 1491
Score = 35.8 bits (81), Expect = 0.027
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 657 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 716
Query: 57 RG 58
+G
Sbjct: 717 QG 718
Score = 35.8 bits (81), Expect = 0.027
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 795 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 854 STGFPGFPGANGEKGARGVAGKPGP 878
Score = 35.8 bits (81), Expect = 0.027
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 903 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 962
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 963 PGPGGVVGPQG 973
Score = 34.7 bits (78), Expect = 0.060
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 649 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704
Query: 62 RGPHG 66
+GP G
Sbjct: 705 QGPIG 709
Score = 34.3 bits (77), Expect = 0.079
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1443 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1502
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1503 PGLPGPQGPKGNKGS 1517
Score = 33.9 bits (76), Expect = 0.10
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 738 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 796
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 797 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 824
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 714 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 772
Score = 32.7 bits (73), Expect = 0.23
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 624
Query: 63 GPHG 66
GP G
Sbjct: 625 GPPG 628
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 771 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 824
Query: 65 HGGAASA 71
G + A
Sbjct: 825 PGPSGQA 831
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 418 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 477
Query: 59 GAP 61
G P
Sbjct: 478 GLP 480
Score = 32.0 bits (71), Expect = 0.39
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 438 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 497
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 498 RYGGDGSKGPTISAQEAQ 515
Score = 32.0 bits (71), Expect = 0.39
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 733 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Score = 27.7 bits (60), Expect = 7.4
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 633 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 691
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 692 QQGNP-GPQG 700
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 51.2 bits (121), Expect = 6e-07
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G+ G+ G+ PG PG P G G G PGE G TG +G +G GPRG P GP G
Sbjct: 1663 GSPGAPGEQGPPGTPGFP-GNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRG--PPGPAG 1719
Query: 67 GAASAQDG 74
+ ++ G
Sbjct: 1720 PSGESRPG 1727
Score = 48.5 bits (114), Expect = 4e-06
Identities = 58/205 (28%), Positives = 75/205 (36%), Gaps = 28/205 (13%)
Query: 7 GTGGSTGDA-----DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA 60
G GS G DG GP P GP G G PG G TG GP+GA G G +G
Sbjct: 1545 GRDGSPGQRGLPGKDGSSGPPGPPGPIGIPGTPGVPGITGSMGPQGALGPPGVPGAKG-- 1602
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHI----TMPFSSPMEAELVRRILSRDAAPL 116
RG G S R AR+ +L+Q H+ + P + +R + P
Sbjct: 1603 ERGERGDLQSQAMVRSV--ARQVCEQLIQSHMARYTAILNQIPSHSSSIRTVQGPPGEP- 1659
Query: 117 PRPGAVLKDFT--------VSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDL 168
RPG+ GN + + G+G+ P G
Sbjct: 1660 GRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPPG--- 1716
Query: 169 RTPKHKVSEQRPGTPGPPPPEGAQG 193
P E RPG+PGPP G +G
Sbjct: 1717 --PAGPSGESRPGSPGPPGSPGPRG 1739
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-------G 59
G G TG G PG+ G G G PG AG +G P G + GPRG
Sbjct: 1690 GERGLTGIKGEKGNPGV--GTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVP 1747
Query: 60 APRGPHGGAASAQDGRCPC-GARRPDSRLLQLHITMPFSSPMEAEL 104
P+GP G C G R P H P +P++ EL
Sbjct: 1748 GPQGPSGQPGYCDPSSCSAYGVRAP-------HPDQPEFTPVQDEL 1786
Score = 40.8 bits (94), Expect = 8e-04
Identities = 57/201 (28%), Positives = 73/201 (36%), Gaps = 27/201 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G+ G G+P GP G GG G G G G RG G +SGP G P GP
Sbjct: 1514 QGMPGMPGEKGEKGDTGLP-GPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPG--PPGP 1570
Query: 65 HG-----GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRP 119
G G P GA P +P + E R L A
Sbjct: 1571 IGIPGTPGVPGITGSMGPQGALGPPG--------VPGAKGERGE--RGDLQSQAMVRSVA 1620
Query: 120 GAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQR 179
V + S + ++ +Q + +R V P G+ R +P +
Sbjct: 1621 RQVCEQLIQSHMARYTAILNQIPSHSSSIRTV------QGPPGEPGRP-GSPGAPGEQGP 1673
Query: 180 PGTPGPPPPEGAQG-DGCRGV 199
PGTPG P G G G RG+
Sbjct: 1674 PGTPGFPGNAGVPGTPGERGL 1694
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG------AGAARASGPRG 58
G G G G PG G PDGP G G PG G G +GP G G G +G
Sbjct: 1469 GPGLRGPKGQQGEPGPKG-PDGPRGEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKG 1527
Query: 59 G----APRGPHGGAAS-AQDG 74
P+G GG S +DG
Sbjct: 1528 DTGLPGPQGIPGGVGSPGRDG 1548
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 17 GPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQD 73
GP GP P GPG G G GE G G GPRG G GP G P+GP G +
Sbjct: 1462 GPAGP--PGGPGLRGPKGQQGEPGPKGPDGPRGEIGLPGPQGPPG--PQGPSGLSIQGMP 1517
Query: 74 G 74
G
Sbjct: 1518 G 1518
Score = 35.0 bits (79), Expect = 0.046
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNA--------GGPGEAGATGGRGPRGAGAARASG 55
+G G G+ GP GP P GP G + G GE G TG GP+G S
Sbjct: 1485 KGPDGPRGEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSP 1544
Query: 56 PRGGAP 61
R G+P
Sbjct: 1545 GRDGSP 1550
Score = 34.7 bits (78), Expect = 0.060
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G+ GS G PG PG P GP G+ G PG G +G G + A G R P P
Sbjct: 1722 GESRPGSPGP---PGSPG-PRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVRAPHPDQP 1777
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 50.8 bits (120), Expect = 8e-07
Identities = 58/203 (28%), Positives = 73/203 (35%), Gaps = 25/203 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G G PG PG+P G G AG GEAG G RGP G GP+G
Sbjct: 500 QGPKGEPGSIGLPGQPGVP-GEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDE----- 553
Query: 66 GGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKD 125
G ++ + G P+ + I PF P + I R G +
Sbjct: 554 -GKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTS-----IPGPPGPKGDRGGPGIPG 607
Query: 126 FTVSGNLLFMSVRDQDREGAGRMRVVGWGL-GSASPEGQKARDLRTPKHKV--------- 175
F L S+R R V GL G P R L P +
Sbjct: 608 FKGEPGL---SIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTG 664
Query: 176 SEQRPGTPGPPPPEGAQGDGCRG 198
++ PG GPP P G +G G +G
Sbjct: 665 AKGEPGVRGPPGPSGPRGVGTQG 687
Score = 45.1 bits (105), Expect = 4e-05
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNA--GGPGEAGATGGRGPRGAGAARASGPRG 58
M G G+ G G GP GP P GP G G GE G G GPRG GP+G
Sbjct: 446 MGIPGIGSQGEQG-IQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKG 504
Query: 59 --------GAPRGPHGGAASAQDGRCPC-GARRPD 84
G P P A+ + G GAR P+
Sbjct: 505 EPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPE 539
Score = 41.2 bits (95), Expect = 6e-04
Identities = 58/208 (27%), Positives = 73/208 (35%), Gaps = 44/208 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-----GA 60
+G G G PG PG P G GN G PG G G G G G G RG GA
Sbjct: 318 KGPRGIQGITGPPGDPG-PKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGA 376
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
P GP G Q G P G P P E R L + P P+
Sbjct: 377 P-GPIGVGEPGQPG--PRG---------------PEGVPGE-----RGLPGEGFPGPKGE 413
Query: 121 AVLKDFTVSGNLLFMSVRDQDRE-----GAGRMRVVGWG----------LGSASPEGQKA 165
+ T L +S++ + + G M + G G +G P+G
Sbjct: 414 KGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAG 473
Query: 166 RDLRTPKHKVSEQRPGTPGPPPPEGAQG 193
+ L K +V + P P P G QG
Sbjct: 474 QGLPGSKGEVGQMGPTGPRGPVGIGVQG 501
Score = 40.8 bits (94), Expect = 8e-04
Identities = 56/220 (25%), Positives = 76/220 (34%), Gaps = 56/220 (25%)
Query: 7 GTGGSTGDA--------DGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGA----- 48
G G G+A +GP G G P +G G+ G G+ G G GP+G
Sbjct: 522 GAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMG 581
Query: 49 --GAARASGPRGGAPRGPHGGAA----SAQDG---RCPCGARRPDSRLLQLHITMPFSSP 99
G S P P+G GG + G R P G + P P +P
Sbjct: 582 PFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRG---------PVGAP 632
Query: 100 MEAELVRRILSRDAAP-LPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSA 158
L D P +P P + G + V D +G +R G
Sbjct: 633 G--------LKGDGYPGVPGPRGLPGP---PGPMGLRGVGDTGAKGEPGVR------GPP 675
Query: 159 SPEGQKARDLRTPKHKVSEQRPGTPGPPPPEGAQGDGCRG 198
P G + + PK ++ G PGPP P G G +G
Sbjct: 676 GPSGPRGVGTQGPKGDTGQK--GLPGPPGPPGYGSQGIKG 713
Score = 37.0 bits (84), Expect = 0.012
Identities = 26/70 (37%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG-------GNAGGPGEAGATGGRGPRGAGAARASGPR 57
G G G GGPGIP G G G G G G G +G G GPR
Sbjct: 587 GTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPR 646
Query: 58 G-GAPRGPHG 66
G P GP G
Sbjct: 647 GLPGPPGPMG 656
Score = 36.6 bits (83), Expect = 0.016
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 4 EGQGTGGSTGDADGPGGPGIPD----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG- 58
+G G G G PG PG G G G PG G G GPRG G G G
Sbjct: 635 KGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQ 694
Query: 59 ----GAPRGPHGGAASAQDGRCPCGARRP 83
G P P G+ + + P G P
Sbjct: 695 KGLPGPPGPPGYGSQGIKGEQGPQGFPGP 723
Score = 34.3 bits (77), Expect = 0.079
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 6 QGTGGSTGDAD----GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
+G G+ G+A G GPG G G+ G GE G G +G +G + GP G P
Sbjct: 265 RGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKGDKG-----SPGPYG--P 317
Query: 62 RGPHG 66
+GP G
Sbjct: 318 KGPRG 322
Score = 33.9 bits (76), Expect = 0.10
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
PG PG P G GN G GE G G G G A GP GG P
Sbjct: 247 PGDPG-PPGTHGNPGIKGERGPKGNPGNAQKGEAGERGP-GGIP 288
Score = 32.7 bits (73), Expect = 0.23
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 13 GDADGPGGPGIPDGPG-----GNAGGPGEA--GATGGRGPRG-AGAARASGPRG------ 58
GD PG PG PG G G PG A G G RGP G G G RG
Sbjct: 245 GDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPG 304
Query: 59 -----GAPRGPHG 66
G+P GP+G
Sbjct: 305 IKGDKGSP-GPYG 316
Score = 31.6 bits (70), Expect = 0.51
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 19 GGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG--GAASAQDGRC 76
G PG P GP G G PG G RGP+G G G RGP G G + R
Sbjct: 245 GDPGDP-GPPGTHGNPG---IKGERGPKGNPGNAQKGEAG--ERGPGGIPGYKGDKGERG 298
Query: 77 PCG 79
CG
Sbjct: 299 ECG 301
Score = 28.5 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
G G G G+ G G G G G PG G G +GP+G
Sbjct: 728 GHGLPGQKGEHGERGDVG-KKGDKGEIGEPGSPGKQGLQGPKG 769
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGPRG P GP
Sbjct: 1787 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 1841
Query: 65 HGGAASAQDGRCPCGARRP 83
G + + G G+R P
Sbjct: 1842 QGESRTGPPG--STGSRGP 1858
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRGAGAARASGPRGGA 60
A +G G G PG PG+ GP G G PGE G TG GPRG GP+G +
Sbjct: 1789 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPG--PPGPQGES 1845
Query: 61 PRGPHGGAAS 70
GP G S
Sbjct: 1846 RTGPPGSTGS 1855
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP+G P+GP+G +
Sbjct: 1578 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 1637
Query: 70 SAQDGR 75
+ GR
Sbjct: 1638 PGEQGR 1643
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 1654 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 1712
Query: 61 PRGPHG 66
P G HG
Sbjct: 1713 P-GDHG 1717
Score = 42.0 bits (97), Expect = 4e-04
Identities = 30/65 (46%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G GDA PG PG PG G PG G G RG G A GPRG P GP
Sbjct: 1641 QGRQGMKGDAGEPGLPGRTGTPG-LPGPPGPMGPPGDRGFTGKDG--AMGPRG--PPGPP 1695
Query: 66 GGAAS 70
G S
Sbjct: 1696 GSPGS 1700
Score = 37.7 bits (86), Expect = 0.007
Identities = 56/227 (24%), Positives = 75/227 (33%), Gaps = 59/227 (25%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG---AGAAR 52
G G G A GPG G P GP G+ G PG G G +GP G G
Sbjct: 1583 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQG 1642
Query: 53 ASGPRGGA-------------------PRGPHGGAA-SAQDGRC-PCGARRPDSRLLQLH 91
G +G A P GP G + +DG P G P
Sbjct: 1643 RQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPG 1702
Query: 92 ITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVV 151
+T P P + R P P + + G++ ++ MR V
Sbjct: 1703 VTGPSGKPGKPGDHGR---------PGPSGLKGEKGDRGDIASQNM----------MRAV 1743
Query: 152 GWGLGSASPEGQKAR-----DLRTPKHKVSEQRPGTPGPPPPEGAQG 193
+ GQ R + ++ S +PG PGPP P G+ G
Sbjct: 1744 ARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAG 1790
Score = 35.4 bits (80), Expect = 0.035
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 7 GTGGSTGDADGPGGPGIP----------DGPGGNAGGP--------GEAGATGGRGPRG- 47
G G+ G PG G+P GP G G P G G+TG RGP G
Sbjct: 1802 GFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGP 1861
Query: 48 AGAARASGPRGGAPRGPHGGAASAQDGRCP 77
G SG RG P GP G S+Q P
Sbjct: 1862 PGRPGNSGIRG--PPGPPGYCDSSQCASIP 1889
Score = 27.7 bits (60), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 162 GQKARDLRTPKHKVSEQRPGTPGPPPPEGAQGDGCRGVAFNVMF 205
G ++ T K + P TP PPP D C+G +++F
Sbjct: 1119 GVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVF 1162
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGPRG P GP
Sbjct: 2951 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 3005
Query: 65 HGGAASAQDGRCPCGARRP 83
G + + G G+R P
Sbjct: 3006 QGESRTGPPG--STGSRGP 3022
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRGAGAARASGPRGGA 60
A +G G G PG PG+ GP G G PGE G TG GPRG GP+G +
Sbjct: 2953 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPG--PPGPQGES 3009
Query: 61 PRGPHGGAAS 70
GP G S
Sbjct: 3010 RTGPPGSTGS 3019
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP+G P+GP+G +
Sbjct: 2742 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 2801
Query: 70 SAQDGR 75
+ GR
Sbjct: 2802 PGEQGR 2807
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 2818 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 2876
Query: 61 PRGPHG 66
P G HG
Sbjct: 2877 P-GDHG 2881
Score = 42.0 bits (97), Expect = 4e-04
Identities = 30/65 (46%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G GDA PG PG PG G PG G G RG G A GPRG P GP
Sbjct: 2805 QGRQGMKGDAGEPGLPGRTGTPG-LPGPPGPMGPPGDRGFTGKDG--AMGPRG--PPGPP 2859
Query: 66 GGAAS 70
G S
Sbjct: 2860 GSPGS 2864
Score = 37.7 bits (86), Expect = 0.007
Identities = 56/227 (24%), Positives = 75/227 (33%), Gaps = 59/227 (25%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG---AGAAR 52
G G G A GPG G P GP G+ G PG G G +GP G G
Sbjct: 2747 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQG 2806
Query: 53 ASGPRGGA-------------------PRGPHGGAA-SAQDGRC-PCGARRPDSRLLQLH 91
G +G A P GP G + +DG P G P
Sbjct: 2807 RQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPG 2866
Query: 92 ITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVV 151
+T P P + R P P + + G++ ++ MR V
Sbjct: 2867 VTGPSGKPGKPGDHGR---------PGPSGLKGEKGDRGDIASQNM----------MRAV 2907
Query: 152 GWGLGSASPEGQKAR-----DLRTPKHKVSEQRPGTPGPPPPEGAQG 193
+ GQ R + ++ S +PG PGPP P G+ G
Sbjct: 2908 ARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAG 2954
Score = 35.4 bits (80), Expect = 0.035
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 7 GTGGSTGDADGPGGPGIP----------DGPGGNAGGP--------GEAGATGGRGPRG- 47
G G+ G PG G+P GP G G P G G+TG RGP G
Sbjct: 2966 GFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGP 3025
Query: 48 AGAARASGPRGGAPRGPHGGAASAQDGRCP 77
G SG RG P GP G S+Q P
Sbjct: 3026 PGRPGNSGIRG--PPGPPGYCDSSQCASIP 3053
Score = 27.7 bits (60), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 162 GQKARDLRTPKHKVSEQRPGTPGPPPPEGAQGDGCRGVAFNVMF 205
G ++ T K + P TP PPP D C+G +++F
Sbjct: 2283 GVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVF 2326
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 50.1 bits (118), Expect = 1e-06
Identities = 60/198 (30%), Positives = 78/198 (39%), Gaps = 31/198 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRGP 64
G G TG G PG P GP G G PG AG G +G +GA G A GP G P GP
Sbjct: 1369 GEPGQTGSPGPTGEPG-PSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGP 1427
Query: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPR--PG-- 120
G A + G P G R P+ + + D P P PG
Sbjct: 1428 QG--APGKPG--PDGLR-------------GIPGPVGEQGLPGSPGPDGPPGPMGPPGLP 1470
Query: 121 AVLKDFTVSGNL----LFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVS 176
+ D G L + +G R + GS+ P+G++ + P +
Sbjct: 1471 GLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQG--ITGPSGPIG 1528
Query: 177 EQ-RPGTPGPPPPEGAQG 193
PG PGPP P+GA+G
Sbjct: 1529 PPGPPGLPGPPGPKGAKG 1546
Score = 47.8 bits (112), Expect = 7e-06
Identities = 58/204 (28%), Positives = 72/204 (35%), Gaps = 37/204 (18%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG----- 58
G G G+A PG G G P GP G G GE+G +G GP G G GP+G
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV 1341
Query: 59 ---GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSP-MEAELVRRILSRDAA 114
G P P + QDG P G + D Q P P +R A
Sbjct: 1342 GFPGDPGPPGEPGPAGQDG--PPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAG 1399
Query: 115 PLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKAR----DLRT 170
P R G ++ +G + G P+G + LR
Sbjct: 1400 PEGRQG------------------EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRG 1441
Query: 171 PKHKVSEQ-RPGTPGPPPPEGAQG 193
V EQ PG+PGP P G G
Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMG 1465
Score = 47.4 bits (111), Expect = 9e-06
Identities = 31/65 (47%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-GAP 61
G GS GD G PG P GP G G PG +GA G GPRG G GPRG P
Sbjct: 1165 GQKGSKGDKGEQGPPG-PTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGP 1223
Query: 62 RGPHG 66
GP G
Sbjct: 1224 PGPVG 1228
Score = 47.0 bits (110), Expect = 1e-05
Identities = 61/205 (29%), Positives = 69/205 (33%), Gaps = 39/205 (19%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARASG-P 56
G G TGD GP GP P GP G G G G GG G GA G A G P
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLP 1296
Query: 57 RGGAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPL 116
G P GP G + P GA P P SP D P
Sbjct: 1297 GEGGPPGPKGERGEKGESG-PSGAAGPPGPKGPPGDDGPKGSPGPVG-----FPGDPGPP 1350
Query: 117 PRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVS 176
PG +D D+ +G GS P G+ P
Sbjct: 1351 GEPGPAGQDGPPG---------DKGDDGEPGQ------TGSPGPTGE-------PGPSGP 1388
Query: 177 EQRPGTPGPPPPEGAQGD-GCRGVA 200
+ G PGP PEG QG+ G +G A
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEA 1413
Score = 47.0 bits (110), Expect = 1e-05
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G G+ GP GP P GP G G PG GA G GP G G A GP G P
Sbjct: 1509 QGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPG--PP 1566
Query: 63 GPHG 66
GP G
Sbjct: 1567 GPPG 1570
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/75 (44%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 5 GQGTGGSTGDAD--GPGGP----------GIPDGPGGNAGGPGEAGATGGRGPRG-AGAA 51
G+GT G G GP GP G P GP GN+GG G AG G RGP G G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKP-GPKGNSGGDGPAGPPGERGPNGPQGPT 957
Query: 52 RASGPRGGAPRGPHG 66
GP+G P GP G
Sbjct: 958 GFPGPKG--PPGPPG 970
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
G G G PG PG+P DGP G+ G G G GG+GP G G GPRG
Sbjct: 739 GPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRG 793
Score = 42.0 bits (97), Expect = 4e-04
Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD PG G P GP G AG PGE G G GP G G GP
Sbjct: 1054 GLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPP 1113
Query: 58 G-----GAP--RGPHGGA 68
G GAP +GP G A
Sbjct: 1114 GPAGEKGAPGEKGPQGPA 1131
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G+ G PG PG P GP G G PGE G G G G G GP G P
Sbjct: 1092 RGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAG--PV 1149
Query: 63 GPHG 66
GP G
Sbjct: 1150 GPPG 1153
Score = 41.6 bits (96), Expect = 5e-04
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 6 QGTGGSTGDAD-----GPGGP----GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARAS 54
QG G GD GP GP G+P PG G G G+ G G GPRG A
Sbjct: 1206 QGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGA--- 1262
Query: 55 GPRGGAPRGPHGG 67
P P+GP GG
Sbjct: 1263 -PGADGPQGPPGG 1274
Score = 41.2 bits (95), Expect = 6e-04
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGN------AGGPGEAGATGGRGPRGAGAARASGP 56
A G+ G T GP G P GP G G PG G +GG GP G R GP
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGER--GP 950
Query: 57 RGGAPRGPHG 66
G P+GP G
Sbjct: 951 NG--PQGPTG 958
Score = 41.2 bits (95), Expect = 6e-04
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--- 58
+G G G+ PG PG PDGP G G PG G G GP+G G GP G
Sbjct: 1440 RGIPGPVGEQGLPGSPG-PDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG 1498
Query: 59 -----GAPRGPHGGA 68
G P GP G +
Sbjct: 1499 EKGDRGLP-GPQGSS 1512
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G+GG G+ PG G P GP G G PG AG G RG G+ AR P P+G G
Sbjct: 577 GSGGLKGE---PGDVG-PQGPRGVQGPPGPAGKPGRRGRAGSDGARGM-PGQTGPKGDRG 631
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G PG G+P DGP G G PG+ G P GA G G P GP
Sbjct: 1030 GLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGL-----PGPVGALGLKGNEG--PPGP 1082
Query: 65 HGGAASAQDGRCPCGARRP 83
G A S + R P GA P
Sbjct: 1083 PGPAGSPGE-RGPAGAAGP 1100
Score = 40.4 bits (93), Expect = 0.001
Identities = 60/206 (29%), Positives = 77/206 (37%), Gaps = 28/206 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG------ 58
QG G G A GP GP DG G G PG+ G+ G +G +G G GP G
Sbjct: 1137 QGPVGLPGPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSG 1195
Query: 59 --GAPRGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAA 114
G P GP G G + P G P + + P E V + +
Sbjct: 1196 ADGEP-GPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQ-MGPPGP 1253
Query: 115 PLPR-----PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVGWGLGSASPEGQKARDL 168
P PR PGA G +V ++ G AG + G G G P+G++
Sbjct: 1254 PGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG-GPPGPKGERG--- 1309
Query: 169 RTPKHKVSEQRPGTPGPPPPEGAQGD 194
K G GPP P+G GD
Sbjct: 1310 ----EKGESGPSGAAGPPGPKGPPGD 1331
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G+ G+A +GP G P GP G G PG G G GP G G + GP G P
Sbjct: 1404 QGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDG--PP 1461
Query: 63 GPHG 66
GP G
Sbjct: 1462 GPMG 1465
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG---- 58
G G G+ G G+P GP G++G GE G TG GP G G GP+G
Sbjct: 1489 GLIGPPGEQGEKGDRGLP-GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGS 1547
Query: 59 GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRR 107
P GP G A P G P ++Q P++A RR
Sbjct: 1548 SGPTGPKGEAGHPG----PPGPPGPPGEVIQ-------PLPIQASRTRR 1585
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGG-- 59
+G GG GD GP P G G G PG G G +GP+G+ G A+G +GG
Sbjct: 846 KGRGGPNGDP----GPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRG 901
Query: 60 -----APRGPHG 66
PRG G
Sbjct: 902 TPGKPGPRGQRG 913
Score = 38.9 bits (89), Expect = 0.003
Identities = 35/82 (42%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
QG GS G PG G G G G PG G G GPRG GPRG G P G
Sbjct: 879 QGPKGSIGFPGFPGANG-EKGGRGTPGKPGPRGQRGPTGPRG-----ERGPRGITGKP-G 931
Query: 64 PHGGAASAQDGRC-PCGARRPD 84
P G S DG P G R P+
Sbjct: 932 PKGN--SGGDGPAGPPGERGPN 951
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 5 GQGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-- 59
G G G G+ +GP GP GP G G PG+ G G G RG G +GP G
Sbjct: 938 GDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPG 997
Query: 60 --APRGPHG 66
P+GP G
Sbjct: 998 VVGPQGPTG 1006
Score = 38.9 bits (89), Expect = 0.003
Identities = 61/213 (28%), Positives = 75/213 (35%), Gaps = 32/213 (15%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G PG PG+ P GP G G GE G G GP G + G
Sbjct: 981 RGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGD 1040
Query: 64 PHGGAASAQDGRCPCGARR-PDSRLLQLHITM--------------PFSSPMEAELVRRI 108
P +DG P G R P R L + P SP E R
Sbjct: 1041 PGPAGLPGKDG--PPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGE-----RG 1093
Query: 109 LSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG-WGL-GSASPEGQKA 165
+ A P+ PG + ++ +G AGR + G GL G A P G
Sbjct: 1094 PAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPG 1153
Query: 166 RD-----LRTPKHKVSEQRPGTPGPPPPEGAQG 193
D + P K S+ G GPP P G QG
Sbjct: 1154 EDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQG 1186
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGP---------GGNAGGPGEAGATGGRGPRGAGAARAS 54
+G G +G A PG GP DGP G+ G PGE G G GP G
Sbjct: 1311 KGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGE 1370
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRPDSR 86
+ G+P GP G G + R P G P+ R
Sbjct: 1371 PGQTGSP-GPTGEPGPSGPPGKRGPPGPAGPEGR 1403
Score = 37.7 bits (86), Expect = 0.007
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G G PG PG P GP G G PG G G GP+G G GP G
Sbjct: 663 RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQ 722
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
G Q P G + P
Sbjct: 723 QGNPGAQGLPGPQGAIGPPGEKGP 746
Score = 37.0 bits (84), Expect = 0.012
Identities = 28/70 (40%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G GD GP GP P G G G GE G G G P G GP G P GP
Sbjct: 640 GEKGHRGDP-GPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPG--PPGPP 696
Query: 66 GGAASAQDGR 75
G + DG+
Sbjct: 697 G--VTGMDGQ 704
Score = 36.6 bits (83), Expect = 0.016
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGA 60
+G G G PG G P G GG G PG+ G G RG +G G A G RG A
Sbjct: 558 RGPAGPMGLTGRPGPVG-PPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRA 612
Score = 36.6 bits (83), Expect = 0.016
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G G PG G P GP G+ G G+ G G RG P G GP+G P GP
Sbjct: 637 GLPGEKGHRGDPGPSG-PPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKG--PPGPP 693
Query: 66 G 66
G
Sbjct: 694 G 694
Score = 36.2 bits (82), Expect = 0.021
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP-----------RGGAP 61
GP GP GP G G G+ G G RGP G GA GP GG
Sbjct: 472 GPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGD 531
Query: 62 RGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 532 AGSKGPMVSAQESQ 545
Score = 36.2 bits (82), Expect = 0.021
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APR 62
+GT G G+ PG G G G G PG G G GP+G G GP G P
Sbjct: 804 KGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRG-----GPNGDPGPL 858
Query: 63 GPHG 66
GP G
Sbjct: 859 GPPG 862
Score = 35.8 bits (81), Expect = 0.027
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASGPRG--GAP--R 62
GP GP P GP G G G+ G G GP+G GA GP+G G P +
Sbjct: 685 GPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEK 744
Query: 63 GPHG 66
GP G
Sbjct: 745 GPLG 748
Score = 33.9 bits (76), Expect = 0.10
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASG 55
GQG G G PG G+ DG G G GE G G G +G G G
Sbjct: 776 GQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPG 835
Query: 56 PRG-GAPRGPHG 66
PRG P GP G
Sbjct: 836 PRGEDGPEGPKG 847
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/68 (41%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG--- 59
+G GS G PG GP G G AG PGE G G GP G G G RG
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGE 668
Query: 60 -APRGPHG 66
PRG G
Sbjct: 669 VGPRGLPG 676
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G GG G P GP G G PG G G G RG + G P
Sbjct: 763 GHPGKEGPPGEKGGQG-PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFP 816
Score = 31.6 bits (70), Expect = 0.51
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G TG PG GP GP G G PG G G +G G + + G P
Sbjct: 694 GPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLP 753
Query: 62 -----RGPHG-----GAASAQDGRCPCGARRP 83
GP G G + G+ P G + P
Sbjct: 754 GMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Score = 31.2 bits (69), Expect = 0.67
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQDGR 75
GP GP G G G PG G G G G G GP G A + G A + R
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGAR 618
Query: 76 CPCGARRP 83
G P
Sbjct: 619 GMPGQTGP 626
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP---- 61
+G G GD G PG P G G G G G G GP G + G P
Sbjct: 819 KGDMGIKGDRGEIGPPG-PRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPG 877
Query: 62 -RGPHG 66
+GP G
Sbjct: 878 RQGPKG 883
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.1 bits (118), Expect = 1e-06
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRGP 64
G G G PG PG P GP G+ G PG GA G RGPRG G A G RG P GP
Sbjct: 1030 GHPGMPGGMGTPGEPG-PQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGP 1088
Query: 65 HG 66
G
Sbjct: 1089 QG 1090
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G G G PGIP GP G G PGE G G +GP G G GP G
Sbjct: 1098 QGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGE 1157
Query: 63 GPHGGAASAQDGRCPCG 79
G A + P G
Sbjct: 1158 PGLPGEAGMKGDLGPLG 1174
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAAR-------ASGPR 57
G G GD G PG+P G G+ G PG G G GP+G +R A G R
Sbjct: 1006 GIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRR 1065
Query: 58 GGAPRGPHGGAASAQDGRCPCGARRPDSR 86
G PRGP G A Q R G P R
Sbjct: 1066 G--PRGP-DGPAGEQGSRGLKGPPGPQGR 1091
Score = 41.2 bits (95), Expect = 6e-04
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAPR 62
G G G+ G PG P GP G G PG AG G +GP G +G GP G R
Sbjct: 1451 GQAGQQGEQGDDGDPG-PMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPG--KR 1507
Query: 63 GPHG 66
G G
Sbjct: 1508 GTEG 1511
Score = 40.4 bits (93), Expect = 0.001
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 6 QGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAP 61
QG G G+ +G GP PDG G+ G PG G G +G G G GP G
Sbjct: 1179 QGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGV 1238
Query: 62 RGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGA 121
RGP G + Q + GA+ + + +L + D P PG
Sbjct: 1239 RGPE-GKSGKQGEKGRTGAKG--------------AKGYQGQLGEMGVPGDPGPPGTPGP 1283
Query: 122 VLKDFTVSGNLLFMSVRDQDREGA----GRMRVVGWGLGSASPEGQKARDLRTPKHKVSE 177
++ + Q G G +VG LG P+G+K K +E
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVG-PLGPPGPKGEKGEQGEDGK---AE 1339
Query: 178 QRPGTPGPPPPEGAQGD 194
PG PG P G +GD
Sbjct: 1340 GPPGPPGDRGPVGDRGD 1356
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--RG 63
+G G G A+GP GP GP G+ G GE G G G G R + G P G
Sbjct: 1329 KGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPG 1388
Query: 64 PHG 66
P G
Sbjct: 1389 PRG 1391
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/56 (44%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+GT G TG G PG PG G G PG AG G +GP G G GPRG
Sbjct: 1507 RGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRG 1562
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGG-AP 61
G G G PG PG P+G G+ G PG+ G G +G GA G GP G P
Sbjct: 892 GKVGDKGSIGFPGPPG-PEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGP 950
Query: 62 RGPHGG-AASAQDGR 75
GP G Q GR
Sbjct: 951 MGPPGAPGLEGQPGR 965
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS 54
+G G GD PG PG P G G G PG G G +G +GA +
Sbjct: 1348 RGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGK 1407
Query: 55 GPRGGAP--RGPHG 66
+ GAP RG G
Sbjct: 1408 QGKAGAPGRRGVQG 1421
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGR---GPRGAGAARASGPRGG 59
G+ G+ GD PG G P PG G+ G PG AG G + GP G+ A+ R G
Sbjct: 683 GKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQG 742
Query: 60 APRGPHG 66
P GP G
Sbjct: 743 LP-GPVG 748
Score = 37.4 bits (85), Expect = 0.009
Identities = 28/70 (40%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG----- 58
G G G PG GP P G G G PGEAG G GP G G G RG
Sbjct: 1132 GPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLE 1191
Query: 59 --GAPRGPHG 66
P GP G
Sbjct: 1192 GDSGPMGPDG 1201
Score = 37.0 bits (84), Expect = 0.012
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G GD PG PG+P GP GN G PG GA G +G G +
Sbjct: 625 GPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGK 684
Query: 53 A-SGPRG 58
A G +G
Sbjct: 685 AHDGAKG 691
Score = 35.8 bits (81), Expect = 0.027
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 31/92 (33%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGG---------------PGEAGATGGRGP 45
QG GS G A G GP PDGP G G PG+ G G RG
Sbjct: 1047 QGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGH 1106
Query: 46 RGA----GAARASGPRG-------GAPRGPHG 66
G+ G SGP G P+GP G
Sbjct: 1107 LGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQG 1138
Score = 35.0 bits (79), Expect = 0.046
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G GD G PG+ PG G+ G PG GA G GP G + S G P
Sbjct: 847 GEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPP 906
Query: 62 RGPHG 66
GP G
Sbjct: 907 -GPEG 910
Score = 34.7 bits (78), Expect = 0.060
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 6 QGTGGSTGDADGPGGPGI--PDG-PG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
QG G G G GI PDG PG G AG GE G G GP G R + G
Sbjct: 1423 QGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGL 1482
Query: 61 P--RGPHG--GAASAQDGRCPCGARRPDSR 86
P +GP G G + P G R + R
Sbjct: 1483 PGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Score = 34.7 bits (78), Expect = 0.060
Identities = 30/79 (37%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHGG-------- 67
GP G P G G G G G G +GPRG GPRG P GP GG
Sbjct: 1574 GPLGILGPSGLPGPKGDKGSRGDWGLQGPRG-----PPGPRGRPGPPGPPGGPIQLQQDD 1628
Query: 68 -AASAQDGRCPCGARRPDS 85
A+ Q GA RP+S
Sbjct: 1629 LGAAFQTWMDTSGALRPES 1647
Score = 34.3 bits (77), Expect = 0.079
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG-GAP 61
QG G G++ PG G P G G G PG G G +G P +G G G P
Sbjct: 1486 QGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGP 1545
Query: 62 RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSP 99
+GP G G Q R P G + + L I P P
Sbjct: 1546 KGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLP 1585
Score = 33.1 bits (74), Expect = 0.18
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRGP 64
G G+ G G G P GP G+ G G+ G G G +G G GP G P+G
Sbjct: 697 GLSGNPGPPGRKGHKGYP-GPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGS 755
Query: 65 HG 66
G
Sbjct: 756 RG 757
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G PG PG+ GP G G PGE G G G G G GP G P+
Sbjct: 778 GVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPK 837
Query: 63 GPHG 66
G G
Sbjct: 838 GMKG 841
Score = 32.3 bits (72), Expect = 0.30
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 24 PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
P GP G+ G PG G G G G A GPRG P GP+G
Sbjct: 626 PPGPKGDCGLPGPPGLPGLPGIPG-----ARGPRG--PPGPYG 661
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGGAPR 62
G G G G PG+P GP G G G+ G + G+ GA G SG G R
Sbjct: 649 GARGPRGPPGPYGNPGLP-GPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGR 707
Query: 63 GPHGG 67
H G
Sbjct: 708 KGHKG 712
Score = 31.2 bits (69), Expect = 0.67
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G+ PG PG G G G GE G G GP G GP+G
Sbjct: 973 GLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPG-----VPGPKG 1027
Query: 59 --GAPRGPHGGAASAQDG-RCPCGARRP 83
G P P G + G + P G+R P
Sbjct: 1028 SMGHPGMPGGMGTPGEPGPQGPPGSRGP 1055
Score = 29.6 bits (65), Expect = 1.9
Identities = 58/216 (26%), Positives = 73/216 (33%), Gaps = 49/216 (22%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPD-----GPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
+GQ G GS G PG G+P GP G+ G PG G G G RG
Sbjct: 723 QGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGK 782
Query: 55 GPRGGAP--------RGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSP------- 99
+ G P RGP G + + P G + L + P P
Sbjct: 783 RGKMGMPGFPGVFGERGPPGLDGNPGELGLP-GPPGVPGLIGDLGVLGPIGYPGPKGMKG 841
Query: 100 MEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSAS 159
+ + L D PG VSG+ F D+ +G
Sbjct: 842 LMGSVGEPGLKGDKGEQGVPG-------VSGDPGFQG--DKGSQGL-------------- 878
Query: 160 PEGQKARDLRTPKHKVSEQRP-GTPGPPPPEGAQGD 194
P AR P KV ++ G PGPP PEG GD
Sbjct: 879 PGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGD 914
Score = 29.6 bits (65), Expect = 1.9
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGN---AGGPGEAGATGGR---GPRGA----GAARA 53
QG G G PG G +GP G AG PG G G + GPRG G
Sbjct: 1381 QGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGI 1440
Query: 54 SGPRGGAPRGPHGGAASAQ 72
+GP G R G Q
Sbjct: 1441 AGPDGLPGRDGQAGQQGEQ 1459
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 1 MQAEGQ-GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEA----GATGGRGPRGAGAARA 53
M A+G+ G G G GP GP P G G G G+A G G RGP G R
Sbjct: 1299 MGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRG 1358
Query: 54 SGPRGGAP 61
G P
Sbjct: 1359 EPGDPGYP 1366
Score = 27.7 bits (60), Expect = 7.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
+G G G G PG P+G G G PG G G G G +R
Sbjct: 711 KGYPGPAGHPGEQGQPG-PEGSPGAKGYPGRQGLPGPVGDPGPKGSR 756
Score = 27.3 bits (59), Expect = 9.6
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G GP G P+G G G PG G G G +G G G +G G P
Sbjct: 927 KGKPGARG-LPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPG 985
Query: 63 GP 64
P
Sbjct: 986 RP 987
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 50.1 bits (118), Expect = 1e-06
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA- 60
G G G+A PG PG+ DGP G G PGE G+ G GP G G GP G A
Sbjct: 68 GKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAG 127
Query: 61 PRGPHGG 67
GP GG
Sbjct: 128 VSGPPGG 134
Score = 48.1 bits (113), Expect = 5e-06
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP------------------RGAGAA 51
GS G GP GP P GP G+ G PG G G RGP +GA A
Sbjct: 551 GSIG-RPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGA 609
Query: 52 RASGPRGG-APRGPHGGAASAQDGR 75
GP G P+GP G +++DG+
Sbjct: 610 GLDGPEGDQGPQGPQGVPGTSKDGQ 634
Score = 43.9 bits (102), Expect = 1e-04
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAP-- 61
+G G G+A G PG+P G+AG PGE G G RG G A GP+G GAP
Sbjct: 351 RGRAGELGEAGPSGEPGVP----GDAGMPGERGEAGHRGSAG-----ALGPQGPPGAPGV 401
Query: 62 RGPHGGAASAQDGRCP 77
RG G S D P
Sbjct: 402 RGFQGQKGSMGDPGLP 417
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP-- 61
G G G+A G PG GP G G PG AG+ G +G RG AG +GP G G P
Sbjct: 313 GLDGQKGEAGRNGAPG-EKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGD 371
Query: 62 ------RGP--HGGAASAQDGRCPCGA 80
RG H G+A A + P GA
Sbjct: 372 AGMPGERGEAGHRGSAGALGPQGPPGA 398
Score = 41.2 bits (95), Expect = 6e-04
Identities = 59/201 (29%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G GD GPGG P G G AG G G G GP G G SG RG P+G
Sbjct: 420 QGLRGDVGDR-GPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKG 478
Query: 64 PHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGA 121
G G + Q P G P+ + V + +PG
Sbjct: 479 TQGPNGTSGVQGVPGPPG-------------------PLGLQGVPGV----PGITGKPGV 515
Query: 122 VLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPG 181
K+ + + RE G M + Q A LR P S RPG
Sbjct: 516 PGKE----------ASEQRIRELCGGM--------ISEQIAQLAAHLRKPLAPGSIGRPG 557
Query: 182 TPGPPPPEGAQGD----GCRG 198
GPP P G G G RG
Sbjct: 558 PAGPPGPPGPPGSIGHPGARG 578
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRG-AGAARASGPRG 58
+G G G PG PG+ G G G PGEAG +G RGP G +G GP G
Sbjct: 97 KGAPGERGSLGPPGPPGL--GGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPG 154
Query: 59 --GAPRGPHGGAASAQDGRCP 77
G P P A D +CP
Sbjct: 155 PPGPPGHPGVLPEGATDLQCP 175
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/88 (39%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAP-RGP 64
G G G+ G G P GP G AG PG G G RG RG G G RG RGP
Sbjct: 196 GYKGEQGEVGKDGEKGDP-GPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP 254
Query: 65 HG-----GAASAQDGRCPCGARRPDSRL 87
G G A + R P G R P L
Sbjct: 255 PGIPGAPGKAGDRGERGPEGFRGPKGDL 282
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGP---GIP-----DGPGGNAGGPGEAGATGGRGPRG-------AGA 50
QG G G+ PG P G+P GP G G PG G G RGP G GA
Sbjct: 201 QGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGA 260
Query: 51 ARASGPRGGAPRGPHG 66
+G RG RGP G
Sbjct: 261 PGKAGDRG--ERGPEG 274
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATG--------GR----GPRGAGAAR 52
G G G+A PG GP P G G G PGEAG G GR GP+GA R
Sbjct: 44 GQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGER 103
Query: 53 AS-GPRGGAPRGPHG 66
S GP G G G
Sbjct: 104 GSLGPPGPPGLGGKG 118
Score = 37.0 bits (84), Expect = 0.012
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR- 62
+G G G PG GP GP G G PG+AG G RGP G GP+G R
Sbjct: 231 RGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEG-----FRGPKGDLGRP 285
Query: 63 GPHG 66
GP G
Sbjct: 286 GPKG 289
Score = 37.0 bits (84), Expect = 0.012
Identities = 58/194 (29%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G GD G GP GP G+ G PG G G GP G + G P G G
Sbjct: 259 GAPGKAGDR-GERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVP-GLDG 316
Query: 67 GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDF 126
A P G + P+ L S + E R +A P PG V D
Sbjct: 317 QKGEAGRNGAP-GEKGPNG--LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPG-VPGDA 372
Query: 127 TVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQK-ARDLRTPKHKVSEQRPGTPGP 185
+ G +R AG G LG P G R + K + G PG
Sbjct: 373 GMPG----------ERGEAGHRGSAG-ALGPQGPPGAPGVRGFQGQKGSM-----GDPGL 416
Query: 186 PPPEGAQGD-GCRG 198
P P+G +GD G RG
Sbjct: 417 PGPQGLRGDVGDRG 430
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/107 (31%), Positives = 37/107 (34%), Gaps = 30/107 (28%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGA---- 48
G G G PG PG+ P GP G G PG G TG +G +G
Sbjct: 148 GLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKD 207
Query: 49 GAARASGPRGGA----------PRGPHG--GAASAQDGRCPCGARRP 83
G GP G A PRG G G R P G R P
Sbjct: 208 GEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP 254
Score = 35.0 bits (79), Expect = 0.046
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
+ A G G G PG PG P DG G AG PG G GP+GA
Sbjct: 20 LAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPP---GPKGAPGKPGKPGEA 76
Query: 59 GAPRGPHGGAASAQDG 74
G P P + +DG
Sbjct: 77 GLPGLPGVDGLTGRDG 92
Score = 34.3 bits (77), Expect = 0.079
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 3 AEGQGTGGSTGDADGPGGP-GIP-------DGPGGNAGGPGEAGATGGRGPRG 47
A G G G GD GP GP G+P DG G G PG+ G G G +G
Sbjct: 606 AAGAGLDGPEGD-QGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQG 657
Score = 32.0 bits (71), Expect = 0.39
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G GD G G G+ DGP G+ G G G G GA GP G P P
Sbjct: 595 RGNQGDRGDK-GAAGAGL-DGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGD-PGLPG 651
Query: 66 GGAASAQDGRCPCGA 80
A G C A
Sbjct: 652 AIGAQGTPGICDTSA 666
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRG--PRGAGAARASGPRGG 59
G G G + PGG G+ PG G G PG G G G P GA +
Sbjct: 121 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP 180
Query: 60 APRGPHG 66
P GP G
Sbjct: 181 GPPGPPG 187
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPR 57
G G G PG PG P PG G G PG + +G G SG R
Sbjct: 628 GTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQGAVLGGVGEKSGSR 682
Score = 27.7 bits (60), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 180 PGTPGPPPPEGAQG 193
PG PGPP P+GA G
Sbjct: 55 PGLPGPPGPKGAPG 68
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 50.1 bits (118), Expect = 1e-06
Identities = 59/210 (28%), Positives = 77/210 (36%), Gaps = 46/210 (21%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRG--G 59
G+G G G G PG+ PG G G GE GA G GP+G GA SG G G
Sbjct: 59 GRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGFPGADG 118
Query: 60 APRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRP 119
P P G + G C + DS + F+ P + + + P P
Sbjct: 119 IPGHPGQGGPRGRPGYDGCNGTQGDSGPQGPPGSEGFTGPPGPQGPK---GQKGEPYALP 175
Query: 120 GAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGW--------GLGSASPEGQKARDLRTP 171
RD+ R G +VG+ +G P G
Sbjct: 176 ---------------KEERDRYRGEPGEPGLVGFQGPPGRPGHVGQMGPVG--------- 211
Query: 172 KHKVSEQRPGTPGPPPPEGAQGDGCRGVAF 201
+ RPG PGPP P+G QG+ RG+ F
Sbjct: 212 ----APGRPGPPGPPGPKGQQGN--RGLGF 235
Score = 44.7 bits (104), Expect = 6e-05
Identities = 36/83 (43%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG-APRG 63
GG G PG PG P G G G PG AGA GG GPRG AG GP G PRG
Sbjct: 683 GGPKGLPGLPGPPG-PTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRG 741
Query: 64 PHG--GAASAQDGRCPCGARRPD 84
G G P G PD
Sbjct: 742 SKGAVGLPGPDGSPGPIGLPGPD 764
Score = 43.5 bits (101), Expect = 1e-04
Identities = 59/205 (28%), Positives = 73/205 (35%), Gaps = 54/205 (26%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--AGAARASGPRG-----G 59
G G GD P G P GP G G PG G G GP G G A G G G
Sbjct: 407 GPKGFIGDPGIPALYGGPPGPDGKRGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPG 466
Query: 60 AP--RGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLP 117
+P RGP G A + RC G D + + LP
Sbjct: 467 SPGARGPKGWKGDAGECRCTEG----DEAI-----------------------KGLPGLP 499
Query: 118 RPGAVLKDFT-VSGNLLFMSVRDQDREGAGRMRVVGW--------GLGSASPEGQKARDL 168
P K F ++G R DR G+ + G+ +G+ P+G K D
Sbjct: 500 GP----KGFAGINGE----PGRKGDRGDPGQHGLPGFPGLKGVPGNIGAPGPKGAKG-DS 550
Query: 169 RTPKHKVSEQRPGTPGPPPPEGAQG 193
RT K +PG PG P +G G
Sbjct: 551 RTITTKGERGQPGVPGVPGMKGDDG 575
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG---- 59
G+ G TG+ PG PG G G G PG G G +GPRG G +GP G
Sbjct: 1308 GSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDR 1367
Query: 60 APRGPHG 66
P+GP G
Sbjct: 1368 GPKGPKG 1374
Score = 41.6 bits (96), Expect = 5e-04
Identities = 42/125 (33%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG------ 58
+ GG +A PG G P G G G PG GA G RG P AGA GPRG
Sbjct: 667 RAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAG 726
Query: 59 --GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPL 116
G P P G + + G PD + + P P E L +L A P
Sbjct: 727 REGFPGPP--GFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLG--AQPG 782
Query: 117 PRPGA 121
PR A
Sbjct: 783 PRGDA 787
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/84 (36%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-------SGPRG- 58
GT G G PG PG GP G G PG GA G GP+G G A GP G
Sbjct: 1402 GTVGPQGRRGPPGAPG-EMGPQGPPGEPGFRGAPGKAGPQGRGGVSAVPGFRGDEGPIGH 1460
Query: 59 -------GAPRGPHGGAASAQDGR 75
GAP P GR
Sbjct: 1461 QGPIGQEGAPGRPGSPGLPGMPGR 1484
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--- 58
G G G GDA G PG P GP G+ G G G G GP G G G RG
Sbjct: 715 GPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPG 774
Query: 59 ---GAPRGPHGGA 68
GA GP G A
Sbjct: 775 EVLGAQPGPRGDA 787
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/84 (40%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG------GNAGGPGEAGATGGRGPRGA-GAARASGPRG 58
+G G GD PG PG PG A PG G G RGP GA G GP G
Sbjct: 1367 RGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPG 1426
Query: 59 -----GAP--RGPHG-GAASAQDG 74
GAP GP G G SA G
Sbjct: 1427 EPGFRGAPGKAGPQGRGGVSAVPG 1450
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRG-AGAARA 53
+G G+ G+ PG PG+ PG G+ G PG G G RGP G G+A
Sbjct: 1247 KGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAAL 1306
Query: 54 SGPRG-----GAPRGP 64
G +G GAP P
Sbjct: 1307 PGSKGDTGNPGAPGTP 1322
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 10 GSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-- 58
G+ GD PG G+ P GP G+A PG G TG G G G A SGP+G
Sbjct: 1278 GAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRP 1337
Query: 59 ---GAP--RGPHG 66
G P +GP G
Sbjct: 1338 GVFGLPGEKGPRG 1350
Score = 37.0 bits (84), Expect = 0.012
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-------AGAA 51
GT G GD+ G PG+ P G G G G GA G RGP+G GA
Sbjct: 1323 GTKGWAGDSGPQGRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAP 1382
Query: 52 RASGPRG--GAPR--GPHGGAASAQDGRCPCGA 80
G G G P+ G Q R P GA
Sbjct: 1383 GTVGAPGIAGIPQKIAVQPGTVGPQGRRGPPGA 1415
Score = 36.6 bits (83), Expect = 0.016
Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG----------GNAGGPGEAGATGGRGPRGAGAARASG 55
+G GS G G PG+P PG G G PG G G GP G G G
Sbjct: 571 KGDDGSPGRDGLDGFPGLPGPPGDGIKGPPGDPGYPGIPGTKGTPGEMGPPGLGLPGLKG 630
Query: 56 PRG-----GAP-----RGPHGGAASAQDGRCPCGARR 82
RG G P GP G A + C +R
Sbjct: 631 QRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKR 667
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/72 (37%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAA 69
G G G PG PDG G G PG G G RG G GPRG A G
Sbjct: 738 GPRGSKGAVGLPG-PDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRGDAGVPGQPGLK 796
Query: 70 SAQDGRCPCGAR 81
R P G R
Sbjct: 797 GLPGDRGPPGFR 808
Score = 36.2 bits (82), Expect = 0.021
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G+TG G G P GP G+ G PG G G G G A P P+G
Sbjct: 1352 QGFMGNTGPTGAVGDRG-PKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVGPQGRR 1410
Query: 66 G 66
G
Sbjct: 1411 G 1411
Score = 35.8 bits (81), Expect = 0.027
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--G 59
G G G PG PG P G G G PG G G +G RG G G +G G
Sbjct: 187 GEPGLVGFQGPPGRPGHVGQMGPVGAPGRPGPPGPPGPKGQQGNRGLGFYGVKGEKGDVG 246
Query: 60 APRGPHG 66
P GP+G
Sbjct: 247 QP-GPNG 252
Score = 35.4 bits (80), Expect = 0.035
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG----------ATGGRGPRGAGAARASGP 56
G GS G DG GP P GP G AG PG G A G RG G A+
Sbjct: 317 GQKGSRG-LDGYQGPDGPRGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPGFPGAQGEPG 375
Query: 57 RGGAPRGP 64
G P P
Sbjct: 376 SQGEPGDP 383
Score = 35.4 bits (80), Expect = 0.035
Identities = 27/64 (42%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APR 62
G G G GD PG PG PG GP G G +G RG G A GP G P
Sbjct: 593 GDGIKGPPGDPGYPGIPGTKGTPG--EMGPPGLGLPGLKGQRGFPGDAGLPGPPGFLGPP 650
Query: 63 GPHG 66
GP G
Sbjct: 651 GPAG 654
Score = 34.7 bits (78), Expect = 0.060
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G+ PG G GP G+AG PG+ G G G RG R S G P
Sbjct: 762 GPDGPPGERGLPGEVLGAQPGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMP 817
Score = 34.7 bits (78), Expect = 0.060
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G GD PG PG+P PG G G PG G G G G GP G
Sbjct: 1170 GLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIHGDPGFPGPPG--E 1227
Query: 62 RGPHGGA 68
RG G A
Sbjct: 1228 RGDPGEA 1234
Score = 34.3 bits (77), Expect = 0.079
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG- 59
GT G GD PG G PG G G GEAG G G +G AG G RG
Sbjct: 914 GTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDP 973
Query: 60 APRGP 64
P GP
Sbjct: 974 GPPGP 978
Score = 33.9 bits (76), Expect = 0.10
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
+G G GD G PG P G G +G G+AG TG +G G+ + G P
Sbjct: 862 EGLPGDRGDPGDTGAPG-PVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPGTP 916
Score = 33.9 bits (76), Expect = 0.10
Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA----------ARASGP 56
G G G+ PG GP G G G+ GA G RGP G+ + SG
Sbjct: 1220 GFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGA 1279
Query: 57 RG--GAP--------RGPHGGAASA 71
G GAP RGP G SA
Sbjct: 1280 PGDKGAPGIFGLKGYRGPPGPPGSA 1304
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-----PRGAGAARASG 55
M G G G G PG G+P GP G G PG AG G R G R
Sbjct: 618 MGPPGLGLPGLKGQRGFPGDAGLP-GPPGFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEA 676
Query: 56 PRGGAPRGPHG 66
+ G GP G
Sbjct: 677 IQPGCIGGPKG 687
Score = 33.1 bits (74), Expect = 0.18
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 10 GSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA 48
G GD PG PG+P PG G G G G G RG +GA
Sbjct: 1034 GVKGDIGVPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Score = 32.3 bits (72), Expect = 0.30
Identities = 26/72 (36%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGA------TGGRGPRG-AGAARASGPRGGAPR 62
G G PG G P G G G PG+ G+ G GPRG G A GP G
Sbjct: 293 GEEGIMGFPGLRGYP-GLSGEKGSPGQKGSRGLDGYQGPDGPRGPKGEAGDPGPPGLPAY 351
Query: 63 GPHGGAASAQDG 74
PH A G
Sbjct: 352 SPHPSLAKGARG 363
Score = 32.0 bits (71), Expect = 0.39
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 13 GDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G+ PG PG+P G G+ G PG G G G GP G +GP G
Sbjct: 557 GERGQPGVPGVP-GMKGDDGSPGRDGLDGFPG--------LPGPPGDGIKGPPG 601
Score = 32.0 bits (71), Expect = 0.39
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-------PRGAGAARASGPRGG 59
G G G PG PG +GP G G PG G G RG P G SG RG
Sbjct: 833 GLYGPPGLHGFPGAPG-QEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGD 891
Query: 60 A 60
A
Sbjct: 892 A 892
Score = 32.0 bits (71), Expect = 0.39
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 7 GTGGST--GDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G+ GS GD PG PG PG PG G G +G +GA R GP G
Sbjct: 1209 GSPGSDIHGDPGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGER--GPPG 1260
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 10 GSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G GDA PG PG+ PG G G PG G G GP +G GP G
Sbjct: 782 GPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGP--SGQPGLYGPPG 839
Query: 59 -----GAP--RGPHG 66
GAP GP G
Sbjct: 840 LHGFPGAPGQEGPLG 854
Score = 29.6 bits (65), Expect = 1.9
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G PG PG+ G G PG +G G GP G GA GP G
Sbjct: 802 RGPPGFRGSQGMPGMPGLK----GQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLG 854
Score = 29.6 bits (65), Expect = 1.9
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G+ G PG+ G G+ G PG G TG +GP G G +GP
Sbjct: 1101 GRPGLKGERGTTGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGPPGLKGQTGFPGLTGPP 1160
Query: 58 G 58
G
Sbjct: 1161 G 1161
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPRGGAPR 62
G G G G PG+ GP G+ G G G GG+G P G G RG R
Sbjct: 1140 GVQGPPGLKGQTGFPGLT-GPPGSQGELGRIGLPGGKGDDGWPGAPGLPGFPGLRG--IR 1196
Query: 63 GPHG 66
G HG
Sbjct: 1197 GLHG 1200
Score = 28.1 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G+ GD PG G+ G G PG G TG G G ++ R G P G
Sbjct: 1122 GEKGTEGDIGFPGITGVT----GVQGPPGLKGQTGFPGLTGPPGSQGELGRIGLPGG 1174
Score = 27.7 bits (60), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 180 PGTPGPPPPEGAQG 193
PG PGPP P GA+G
Sbjct: 689 PGLPGPPGPTGAKG 702
Score = 27.3 bits (59), Expect = 9.6
Identities = 27/68 (39%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG----- 58
G G G PG G P GP G G PG G G G P G G RG
Sbjct: 815 GMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDT 874
Query: 59 GAPRGPHG 66
GAP GP G
Sbjct: 875 GAP-GPVG 881
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 49.3 bits (116), Expect = 2e-06
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G +G A PG PGIP PG AGG GEAG G RG RG R R G P P
Sbjct: 2024 RGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
Score = 47.8 bits (112), Expect = 7e-06
Identities = 32/78 (41%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 6 QGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G GD PG PG P GP G+ G G AG G RGP G G + G
Sbjct: 1727 EGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGK 1786
Query: 57 RGGA-PRGPHGGAASAQD 73
G A P GP+G A A D
Sbjct: 1787 PGAAGPSGPNGAAGKAGD 1804
Score = 47.4 bits (111), Expect = 9e-06
Identities = 55/193 (28%), Positives = 71/193 (36%), Gaps = 21/193 (10%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
G+G G TG PG PG GP G+ G PG+ G TG G G A G+P
Sbjct: 2216 GRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG 2275
Query: 63 GPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAV 122
P G P G P Q + +P + AP G +
Sbjct: 2276 VPGSPGLPGPVG--PKGEPGPTGAPGQAVVGLPGAK-----------GEKGAPGGLAGDL 2322
Query: 123 LKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQK-ARDLRTPKHKVSEQRPG 181
+ + G+ R + E AGR G +GQK A + K PG
Sbjct: 2323 VGEPGAKGDRGLPGPRGEKGE-AGR----AGEPGDPGEDGQKGAPGPKGFKGDPGVGVPG 2377
Query: 182 TPGPPPPEGAQGD 194
+PGPP P G +GD
Sbjct: 2378 SPGPPGPPGVKGD 2390
Score = 45.4 bits (106), Expect = 3e-05
Identities = 62/204 (30%), Positives = 73/204 (35%), Gaps = 26/204 (12%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAP 61
G G GD++ PG PG P PG G G PG G G RG P G A G RG P
Sbjct: 1442 GKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERG--P 1499
Query: 62 RGPHG-----GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILS------ 110
GP G G A + P G P R Q P P + +V ++
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGR--QGEKGEP-GRPGDPAVVGPAVAGPKGEK 1556
Query: 111 RDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRT 170
D P GA L + + G +G G A P G D
Sbjct: 1557 GDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGL-TGRAGPPG----DSGP 1611
Query: 171 PKHKVSEQRPGTPGPPPPEGAQGD 194
P K RPG PGP P G G+
Sbjct: 1612 PGEKGDPGRPGPPGPVGPRGRDGE 1635
Score = 45.4 bits (106), Expect = 3e-05
Identities = 35/89 (39%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGG-NAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
G+ G GD PG PG P GPG G PG+ G G RGP+G G A G RG
Sbjct: 1688 GSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGI 1747
Query: 59 ---GAPRGPHG-----GAASAQDGRCPCG 79
P GP G G A + R P G
Sbjct: 1748 EGFRGPPGPQGDPGVRGPAGEKGDRGPPG 1776
Score = 44.7 bits (104), Expect = 6e-05
Identities = 35/90 (38%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 4 EGQ-GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GQ G G G+ G PGI P G G+AG PG G+ G RGP G G GP
Sbjct: 2688 DGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGP 2747
Query: 57 RG----GAPRGPHGGAASAQDGR-CPCGAR 81
G GAP P + GR P G R
Sbjct: 2748 PGERVVGAPGVPGAPGERGEQGRPGPAGPR 2777
Score = 42.4 bits (98), Expect = 3e-04
Identities = 59/206 (28%), Positives = 69/206 (33%), Gaps = 46/206 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRG--- 58
G+ + G+ PG G P PG G G PG G+ G GPRG R GPRG
Sbjct: 1290 GSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGER--GPRGPKG 1347
Query: 59 --GAPRGPHGGAASAQDGR----CPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
GAP GG GR P G P L D
Sbjct: 1348 EPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPL-----------------------GD 1384
Query: 113 AAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGL----GSASPEGQKARDL 168
P PG L + G+ R G G + GL GS P+G
Sbjct: 1385 PGPRGPPG--LPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPG 1442
Query: 169 RTPKHKVSEQ-RPGTPGPPPPEGAQG 193
+ + SE PG PG P G QG
Sbjct: 1443 KKGEKGDSEDGAPGLPGQPGSPGEQG 1468
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/74 (40%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G A PG GIP GP G+ G PG +G G +G G G GPRG
Sbjct: 2419 GPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVG---LPGPRG--E 2473
Query: 62 RGPHGGAASAQDGR 75
RG G +DGR
Sbjct: 2474 RGEPG--IRGEDGR 2485
Score = 41.2 bits (95), Expect = 6e-04
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGA-GAARASGPRG- 58
QG G +G PG PG PG G G PGE G G +G GA G GP+G
Sbjct: 1817 QGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGE 1876
Query: 59 -GAP--RGPHG 66
GAP GP G
Sbjct: 1877 RGAPGILGPQG 1887
Score = 40.8 bits (94), Expect = 8e-04
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 2 QAEGQGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARA 53
+A GT G+ G PG PG P GP G G PG+ GG GP G
Sbjct: 1312 RAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQ--VIGGEGPGLPGRKGD 1369
Query: 54 SGPRG-GAPRGPHG 66
GP G PRGP G
Sbjct: 1370 PGPSGPPGPRGPLG 1383
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 21/77 (27%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------------GAARA 53
G G GD PG PG+P G AG G GA G RGP G G+ +
Sbjct: 1634 GEVGEKGDEGPPGDPGLP----GKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGS 1689
Query: 54 SGPRGG----APRGPHG 66
SGP+G P GP G
Sbjct: 1690 SGPKGDRGEPGPPGPPG 1706
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G PG PG+P G G G PG A A G RG GA S R G P P
Sbjct: 1260 GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP 1319
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/72 (40%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
EG G G GD GP P GP G G PG G G G G G RG P G
Sbjct: 1359 EGPGLPGRKGDP----GPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERG--PPG 1412
Query: 64 P-HGGAASAQDG 74
P GG A + G
Sbjct: 1413 PGEGGIAPGEPG 1424
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG----GAP 61
G G G PG PG DG G G G +G G GP+G GA GP+G P
Sbjct: 1836 GKPGLNGKNGEPGDPG-EDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGP 1894
Query: 62 RGPHG-GAASAQDGRCPCGAR 81
GP G G G P G R
Sbjct: 1895 VGPPGQGFPGVPGGTGPKGDR 1915
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAPR 62
G G G GP GP P G G+ G PG G G GP+G G +GP G
Sbjct: 2162 GPEGKPG-LQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLT 2220
Query: 63 GPHG 66
GP G
Sbjct: 2221 GPTG 2224
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 5 GQGTGG-STGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG-PRGGAPR 62
G G GG + G+ PG PG P GP G G PG+ G G G G P PR
Sbjct: 1412 GPGEGGIAPGEPGLPGLPGSP-GPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPR 1470
Query: 63 GPHGGAASAQDGRCP 77
GP G D P
Sbjct: 1471 GPPGAIGPKGDRGFP 1485
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
QG G G PG G GP G+ G PG G G GPRG G +GP G
Sbjct: 2107 QGPPGLKGAKGEPGSNG-DQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEG 2165
Query: 59 ----GAPRGPHG 66
PRGP G
Sbjct: 2166 KPGLQGPRGPPG 2177
Score = 37.7 bits (86), Expect = 0.007
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-------------GAA 51
G G G + PG G+ P G G G PG G G +G RG G+A
Sbjct: 2662 GEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSA 2721
Query: 52 RASGPRGG-APRGPHG 66
GP G PRGP G
Sbjct: 2722 GPPGPPGSVGPRGPEG 2737
Score = 37.0 bits (84), Expect = 0.012
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--RG 63
QG G G A G G P G G +G G+ GA G GP GA R G P RG
Sbjct: 1757 QGDPGVRGPAGEKGDRG-PPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRG 1815
Query: 64 PHG 66
G
Sbjct: 1816 EQG 1818
Score = 37.0 bits (84), Expect = 0.012
Identities = 31/76 (40%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 2 QAEGQGTGGSTGD--ADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRG-AGA 50
Q G G GD PG PG P PG G G PG G G GPRG G
Sbjct: 2358 QKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQ 2417
Query: 51 ARASGPRGGAPRGPHG 66
SG RG A GP G
Sbjct: 2418 PGPSGERGLA--GPPG 2431
Score = 36.2 bits (82), Expect = 0.021
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G +G PG GP P+G G AG PG G G RG +G SGP G
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPG--PSGPPG 1827
Score = 35.8 bits (81), Expect = 0.027
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G+ GPG GI G G G PG G G GP G + G
Sbjct: 1399 KGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLP 1458
Query: 64 PHGGAASAQDGRCPCGARRP 83
G+ Q R P GA P
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGP 1478
Score = 35.8 bits (81), Expect = 0.027
Identities = 31/81 (38%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGP 64
+G G TG A PG GP G G PG G G GPRG G G G P G
Sbjct: 1594 RGPIGLTGRAGPPGD----SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEG--PPGD 1647
Query: 65 HG--GAASAQDGRCPCGARRP 83
G G A + R G R P
Sbjct: 1648 PGLPGKAGERGLRGAPGVRGP 1668
Score = 35.8 bits (81), Expect = 0.027
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS--GPRG-GAPR 62
+G G G+ G PG GP G+ G PG G G G GA G RG PR
Sbjct: 1672 KGDQGDPGEDGRNGSPG-SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPR 1730
Query: 63 GPHG 66
GP G
Sbjct: 1731 GPKG 1734
Score = 35.8 bits (81), Expect = 0.027
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G GD G PG+ P GP G G PGE G G G G R
Sbjct: 1797 GAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRK 1856
Query: 59 GAPRGPHGGAASAQDGR 75
G +G G AS ++GR
Sbjct: 1857 G-EKGDSG--ASGREGR 1870
Score = 35.4 bits (80), Expect = 0.035
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDG-PG--GNAGGPGEAGATGGRGPRGAGAARASGPR 57
+G G G PG PG P+G PG G G PG G G GP GA +GP
Sbjct: 2140 RGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGP--PGAPGLAGPA 2197
Query: 58 GGAPRGPHG 66
G P+GP G
Sbjct: 2198 G--PQGPSG 2204
Score = 35.0 bits (79), Expect = 0.046
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 13 GDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-----GAPRGP 64
G PG G+ GP G+ G PG GA G +GP G+A A G RG G P P
Sbjct: 1254 GQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGP--PGSATAKGERGFPGADGRPGSP 1310
Score = 35.0 bits (79), Expect = 0.046
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA--RASGPRGG---- 59
+G G G +GP G P G G G G+ G+ G +G +G A GPRG
Sbjct: 2480 RGEDGRPGQ-EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDM 2538
Query: 60 APRGPHG 66
RGP G
Sbjct: 2539 GERGPRG 2545
Score = 34.3 bits (77), Expect = 0.079
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG------EAGATGGRGPRGAGAARASGPRGGA 60
G G GD+ G G DGP G G PG G G GP G G P G
Sbjct: 1854 GRKGEKGDSGASGREG-RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGV--PGGTG 1910
Query: 61 PRGPHGGAASAQDGRCP 77
P+G G S + P
Sbjct: 1911 PKGDRGETGSKGEQGLP 1927
Score = 33.9 bits (76), Expect = 0.10
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 27 PGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDS 85
P G G PGE G G GP G G +G G P+GP G A + + P RP S
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPG--PQGPPGSATAKGERGFPGADGRPGS 1309
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA----- 60
+G G G G PG +GP G G PG G G +G G+A G +G +
Sbjct: 2471 RGERGEPGIRGEDGRPG-QEGPRGLTGPPGSRGERGEKG--DVGSAGLKGDKGDSAVILG 2527
Query: 61 PRGPHG 66
P GP G
Sbjct: 2528 PPGPRG 2533
Score = 33.1 bits (74), Expect = 0.18
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGG 59
G G GD+ GP P G G+ G G G G +GPRG G+ G +G
Sbjct: 2514 GLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGS 2573
Query: 60 A----------PRGPHGGAASAQDGRCP 77
A P+G G A D P
Sbjct: 2574 AGLPGLRGLLGPQGQPGAAGIPGDPGSP 2601
Score = 33.1 bits (74), Expect = 0.18
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G PG GIP G+ G PG+ G G RG + G GPRG
Sbjct: 2578 GLRGLLGPQGQPGAAGIP----GDPGSPGKDGVPGIRGEK--GDVGFMGPRG 2623
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G +G+ PG G P G G G G+ G G +GP G A G RG P GP
Sbjct: 1978 RGPKGDSGEQGPPGKEG-PIGFPGERGLKGDRGDPGPQGPPGL----ALGERG--PPGPS 2030
Query: 66 G 66
G
Sbjct: 2031 G 2031
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 14 DADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG 66
D GPG G PG G G PG G G +G RG + G RG PRG G
Sbjct: 2097 DEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK--GDRGEPGPRGQDG 2150
Score = 31.2 bits (69), Expect = 0.67
Identities = 51/196 (26%), Positives = 63/196 (32%), Gaps = 19/196 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
G G GD PG G P G G PG +G G G G G +G G A R
Sbjct: 2000 GERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGE 2059
Query: 66 GGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKD 125
G + R G P P + + LS + P GA +
Sbjct: 2060 RGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP 2119
Query: 126 FTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKA-------RDLRTPKHKVSEQ 178
S DQ +G + + G P GQ R + P+ K Q
Sbjct: 2120 ---------GSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ 2170
Query: 179 RPGTPGPPPPEGAQGD 194
G GPP P G GD
Sbjct: 2171 --GPRGPPGPVGGHGD 2184
Score = 31.2 bits (69), Expect = 0.67
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG 58
+ E GG GD G G G G G GEAG G G G G A GP+G
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKG 2366
Score = 30.0 bits (66), Expect = 1.5
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 23 IPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRGPHGGAASAQDGRCPCG 79
+P+ G G GE G G GP G G G RG P+GP G A + P G
Sbjct: 1973 VPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSG 2031
Score = 29.3 bits (64), Expect = 2.5
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE-----------AGATGGRGPRGAGAARAS 54
+G G G+ G PG+P G G PG G +G +GP G A+
Sbjct: 2063 RGEKGERGEQGRDGPPGLP----GTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGE 2118
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRPD 84
P +GP G G + R G R D
Sbjct: 2119 -PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQD 2149
Score = 28.9 bits (63), Expect = 3.3
Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPD--------------------GPGGNAGGPGEAGATGG 42
+GQ G G GD PG G+P G G G GE G G
Sbjct: 2586 QGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGE 2645
Query: 43 RGPRGAGAARASGPRGGAPRGPHGGAASAQDG 74
GP G G P P A ++G
Sbjct: 2646 AGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEG 2677
Score = 28.5 bits (62), Expect = 4.3
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDA--------DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G+ GD DG GP +G G+ G GE G G G G +
Sbjct: 2530 GPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP 2589
Query: 59 GAPRGPHGGAASAQDG 74
GA P + +DG
Sbjct: 2590 GAAGIPGDPGSPGKDG 2605
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARA 53
+A G+ G +GD PG PG P +G G G PGE G G RGPRG R
Sbjct: 381 EAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTR- 439
Query: 54 SGPRGG-APRGPHG 66
GPRG GP G
Sbjct: 440 -GPRGDPGEAGPQG 452
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/64 (45%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APR 62
GT G GD GP G +GP G G PGEAG G +G RG G + G RG P
Sbjct: 437 GTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPA 496
Query: 63 GPHG 66
GP G
Sbjct: 497 GPPG 500
Score = 42.4 bits (98), Expect = 3e-04
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG-A 60
+G G+ G+A PG GP G+ G PGE G G +G G G A G RGG
Sbjct: 373 KGEPGADGEAGRPGS----SGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPG 428
Query: 61 PRGPHG 66
RGP G
Sbjct: 429 ERGPRG 434
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG-------PRGAGAARASGPR 57
G G+ G+ GPG GP G G G PGEAG G +G P G A GP+
Sbjct: 416 GPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPK 475
Query: 58 GGAPRGPHG--GAASAQDGRCPCG 79
G RG G G+ A+ P G
Sbjct: 476 G--YRGDEGPPGSEGARGAPGPAG 497
Score = 34.7 bits (78), Expect = 0.060
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG 47
G G G+A PG PG P G G G G G G RGP+G
Sbjct: 275 GLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKG 317
Score = 33.5 bits (75), Expect = 0.13
Identities = 51/190 (26%), Positives = 59/190 (31%), Gaps = 28/190 (14%)
Query: 7 GTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G GS G GP GP G G G GE GA G G G+ + G P GP
Sbjct: 344 GCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEP-GP 402
Query: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLK 124
G A D P P R P E R P PG
Sbjct: 403 PGEKGEAGDEGNPGPDGAPGER----------GGP--GERGPRGTPGTRGPRGDPGEAGP 450
Query: 125 DFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPGTPG 184
DQ REG + G P+G + D P + + PG G
Sbjct: 451 Q------------GDQGREGPVGVPGDPGEAGPIGPKGYRG-DEGPPGSEGARGAPGPAG 497
Query: 185 PPPPEGAQGD 194
PP G G+
Sbjct: 498 PPGDPGLMGE 507
Score = 32.3 bits (72), Expect = 0.30
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 6 QGTGGSTG--DADGPGG-PGIP--------DGPGGNA--------GGPGEAGATGGRGPR 46
+G GS G A GP G PG P DGP GN G PG GA G G +
Sbjct: 481 EGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTK 540
Query: 47 GAGAARASGPRGGAPRGPHG-----GAASAQDGRCPCGARRP 83
G + G P + G A+ R P G + P
Sbjct: 541 GYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGP 582
Score = 30.4 bits (67), Expect = 1.1
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 22/76 (28%)
Query: 5 GQGTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGE----------AGATGGR 43
G GT G G PG G P G G AG PG+ GA G R
Sbjct: 515 GNGTEGFPGFPGYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYR 574
Query: 44 GPRG-AGAARASGPRG 58
GP G G GP G
Sbjct: 575 GPEGPQGPPGHQGPPG 590
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 48.9 bits (115), Expect = 3e-06
Identities = 61/205 (29%), Positives = 76/205 (37%), Gaps = 56/205 (27%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G RG P G
Sbjct: 1009 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1067
Query: 64 PHG----GAASAQDGRC----------PCGARRPDSRLLQLHITMPFSSPMEAELVRRIL 109
P G S + G P G R P + P A+
Sbjct: 1068 PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP-------------AGPNGAD------ 1108
Query: 110 SRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLR 169
P PG V GNL + + E +G + G G P G++
Sbjct: 1109 ----GPQGPPGGV-------GNLGPPGEKGEPGE-SGSPGIQG-EPGVKGPRGERG---- 1151
Query: 170 TPKHKVSEQRPGTPGPPPPEGAQGD 194
K +PG PGPP P+G GD
Sbjct: 1152 ---EKGESGQPGEPGPPGPKGPTGD 1173
Score = 46.6 bits (109), Expect = 2e-05
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
+G G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1147 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1206
Query: 55 GPRGGAPRGPHGGAASAQDG-RCPCGARRP 83
G P P + ++G P G R P
Sbjct: 1207 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1236
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/62 (46%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
GT G G PG PG P DGP G G PGE G G G G G GP G P GP
Sbjct: 872 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG--GPGLKGNEGPSG--PPGP 927
Query: 65 HG 66
G
Sbjct: 928 AG 929
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G A GPG G P GP G AG PGE GA G GP G P P+GP
Sbjct: 902 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPGPQGP 954
Query: 65 HGGA 68
G A
Sbjct: 955 PGAA 958
Score = 45.1 bits (105), Expect = 4e-05
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
QG+ G G+ A GP GPG P G G AG G GATG GP+G + GP G
Sbjct: 1351 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ--GPPGHP 1408
Query: 61 PRGPHGGAASAQDGRCPCGARR--PDSRLLQLHITMP 95
GP G + P RR SRL+Q +P
Sbjct: 1409 --GPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIP 1443
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGI-----------------PDGPGGNAGGPGEAGATGGRGPRGA 48
+G G TG PG PG+ GP G+ G PG GA+G +G RG
Sbjct: 685 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 744
Query: 49 GAARASGPRG-GAPRGPHG 66
SGPRG P GP G
Sbjct: 745 SG--KSGPRGERGPTGPRG 761
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
+G G+ GD G PG P PG G AG PG G GG+G +G
Sbjct: 1198 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1257
Query: 48 AGAARASGPRGGAPRGPHG 66
GA +GP G P GP G
Sbjct: 1258 IGAPGKTGPVG--PAGPAG 1274
Score = 42.4 bits (98), Expect = 3e-04
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1121 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1180
Query: 55 GPRG--GAPRGPHGGAASAQDG 74
GP G G P P G QDG
Sbjct: 1181 GPVGFPGDPGPPGEGGPRGQDG 1202
Score = 41.2 bits (95), Expect = 6e-04
Identities = 31/67 (46%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGR---GPRGA-GAARASGPRGG 59
QG GS G PG G G G +G GE G TG R GPRGA G + A G GG
Sbjct: 721 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGG 780
Query: 60 APRGPHG 66
GPHG
Sbjct: 781 --DGPHG 785
Score = 41.2 bits (95), Expect = 6e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 6 QGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRGAGAARASGP 56
+G G G ADGP GP G+ + GP G G PGE+G+ G +GPRG +
Sbjct: 1099 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1157
Query: 57 RGGAPRGPHGGAASAQDG 74
+ G P P + DG
Sbjct: 1158 QPGEPGPPGPKGPTGDDG 1175
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRG----GAP 61
G G G+ GP GP GP G G G G +GG GP G R GP+G P
Sbjct: 746 GKSGPRGER-GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 804
Query: 62 RGPHG 66
+GP G
Sbjct: 805 KGPPG 809
Score = 40.4 bits (93), Expect = 0.001
Identities = 63/227 (27%), Positives = 79/227 (34%), Gaps = 36/227 (15%)
Query: 2 QAEGQGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
Q G G +GD GP GP GP G AG G AGA G RG G + G
Sbjct: 417 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 476
Query: 60 APRGP----HGGAASAQDGRCP---CGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
P P H G AQ P G R D + P P E+ R +L
Sbjct: 477 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI------GPRGLPGESG-PRGLLGPK 529
Query: 113 AAP-LPRPGAVLKDFTVSGNLLFMSVRDQ----DREGAGRMRVVGWGLGSASPEGQKARD 167
P +P P V G + + + ++G + + G+ P G+K
Sbjct: 530 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 589
Query: 168 LR-----------TPKHKVSEQRPGTPGPPPPEGAQG----DGCRGV 199
+ P H E PGT G P G QG G RGV
Sbjct: 590 GKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGV 636
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/67 (43%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
QG G+ GD G PG P GP G AG PG G G G G GA +GP G
Sbjct: 1246 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG- 1304
Query: 60 APRGPHG 66
P GP G
Sbjct: 1305 -PVGPPG 1310
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G PG PG+ P G G G GE G G GP G + + G
Sbjct: 823 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 882
Query: 64 PHGGAASAQDGRCPCGAR 81
P A +DG P G R
Sbjct: 883 PGPPGAPGKDG--PAGLR 898
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 6 QGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
+G G+ G+ PG GP G G+ G PG G+ G +G G GA+ GP G
Sbjct: 1315 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1374
Query: 59 ---GAPRGPHGGAASAQDG--------RCPCGARRPDSRLLQ-LHITMPFSSPMEAELVR 106
P GP G + G + P G P ++Q L I MP + + R
Sbjct: 1375 PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSR 1434
Query: 107 RILSRDAAP 115
+ +A P
Sbjct: 1435 LMQEDEAIP 1443
Score = 38.1 bits (87), Expect = 0.005
Identities = 64/214 (29%), Positives = 75/214 (35%), Gaps = 45/214 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG-----------GR-GPRGA------ 48
G GS G+ DGP GP GP G+ G PG G G GR GP+G+
Sbjct: 674 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 732
Query: 49 -GAARASGPRG-GAPRGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAEL 104
GA+ G RG GP G G + R P GA P P E L
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 792
Query: 105 VRRILSRDAAPLPR--PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG--WGLGSAS 159
+ P P+ PG KD V Q + G G VVG G
Sbjct: 793 PGP-QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETG 851
Query: 160 PEGQKARDLRTPKHKVSEQRPGTPGPPPPEGAQG 193
P G++ G PGPP P G QG
Sbjct: 852 PMGER----------------GHPGPPGPPGEQG 869
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPR 62
+G GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 934 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 988
Query: 63 GPHGGAASAQD 73
GP G A D
Sbjct: 989 GPPGVAGEDGD 999
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRG----- 47
G G+ G PG PG P G G G PG G TG GP G
Sbjct: 1175 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1234
Query: 48 --AGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRP 83
AG+ + G +GG GA A P G P
Sbjct: 1235 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1272
Score = 37.4 bits (85), Expect = 0.009
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP------------RGGA 60
GP GP GP G G PG G G RGP G G+ A GP GG
Sbjct: 316 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGG 375
Query: 61 PRGPHGGAASAQ 72
+GP A AQ
Sbjct: 376 DKGPVVAAQEAQ 387
Score = 37.4 bits (85), Expect = 0.009
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASA 71
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 401 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 459
Query: 72 Q 72
+
Sbjct: 460 R 460
Score = 37.4 bits (85), Expect = 0.009
Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
QG G TG G PG P PG G+ G PG G G G RG
Sbjct: 844 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 903
Query: 48 ---AGAARASGPRGG-APRGPHGGAAS 70
G A G +G P GP G A S
Sbjct: 904 RGLPGTAGGPGLKGNEGPSGPPGPAGS 930
Score = 37.0 bits (84), Expect = 0.012
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRG 63
+G G +G + GP G P GP G G G G +G +G G G G RG P+G
Sbjct: 739 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 797
Query: 64 PHG 66
P+G
Sbjct: 798 PNG 800
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG G+P GP G G PG+ G G G RG G +GP
Sbjct: 775 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 834
Query: 57 RG-GAPRGPHGGA 68
G GP G A
Sbjct: 835 PGPPGVVGPQGAA 847
Score = 36.2 bits (82), Expect = 0.021
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--G 59
QG G+TG A PG P GP G G G+AGA G +G G G G +G G
Sbjct: 1291 QGRPGATGQAGPPG----PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRG 1346
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
P GP G + P GA P
Sbjct: 1347 LP-GPQGSPGQKGEMGIP-GASGP 1368
Score = 34.3 bits (77), Expect = 0.079
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPG---IPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGP 56
QG G G PG PG +P PG G G G G G GP+G AG G
Sbjct: 796 QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGE 855
Query: 57 RG-GAPRGPHG 66
RG P GP G
Sbjct: 856 RGHPGPPGPPG 866
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
+G G TG GP G G G +GG G G G RG P G GP+G P
Sbjct: 751 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 808
Query: 63 GPHG 66
GP G
Sbjct: 809 GPPG 812
Score = 32.3 bits (72), Expect = 0.30
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G A PG G+ PG G G G+AG G GP G G A A G +
Sbjct: 1265 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEK 1324
Query: 58 G 58
G
Sbjct: 1325 G 1325
Score = 30.8 bits (68), Expect = 0.87
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 599 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 658
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+G G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 643 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 701
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 48.9 bits (115), Expect = 3e-06
Identities = 61/205 (29%), Positives = 76/205 (37%), Gaps = 56/205 (27%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G RG P G
Sbjct: 988 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1046
Query: 64 PHG----GAASAQDGRC----------PCGARRPDSRLLQLHITMPFSSPMEAELVRRIL 109
P G S + G P G R P + P A+
Sbjct: 1047 PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP-------------AGPNGAD------ 1087
Query: 110 SRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLR 169
P PG V GNL + + E +G + G G P G++
Sbjct: 1088 ----GPQGPPGGV-------GNLGPPGEKGEPGE-SGSPGIQG-EPGVKGPRGERG---- 1130
Query: 170 TPKHKVSEQRPGTPGPPPPEGAQGD 194
K +PG PGPP P+G GD
Sbjct: 1131 ---EKGESGQPGEPGPPGPKGPTGD 1152
Score = 46.6 bits (109), Expect = 2e-05
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
+G G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1126 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1185
Query: 55 GPRGGAPRGPHGGAASAQDG-RCPCGARRP 83
G P P + ++G P G R P
Sbjct: 1186 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1215
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/62 (46%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
GT G G PG PG P DGP G G PGE G G G G G GP G P GP
Sbjct: 851 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG--GPGLKGNEGPSG--PPGP 906
Query: 65 HG 66
G
Sbjct: 907 AG 908
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G A GPG G P GP G AG PGE GA G GP G P P+GP
Sbjct: 881 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPGPQGP 933
Query: 65 HGGA 68
G A
Sbjct: 934 PGAA 937
Score = 45.1 bits (105), Expect = 4e-05
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
QG+ G G+ A GP GPG P G G AG G GATG GP+G + GP G
Sbjct: 1330 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ--GPPGHP 1387
Query: 61 PRGPHGGAASAQDGRCPCGARR--PDSRLLQLHITMP 95
GP G + P RR SRL+Q +P
Sbjct: 1388 --GPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIP 1422
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGI-----------------PDGPGGNAGGPGEAGATGGRGPRGA 48
+G G TG PG PG+ GP G+ G PG GA+G +G RG
Sbjct: 664 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 723
Query: 49 GAARASGPRG-GAPRGPHG 66
SGPRG P GP G
Sbjct: 724 SG--KSGPRGERGPTGPRG 740
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
+G G+ GD G PG P PG G AG PG G GG+G +G
Sbjct: 1177 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1236
Query: 48 AGAARASGPRGGAPRGPHG 66
GA +GP G P GP G
Sbjct: 1237 IGAPGKTGPVG--PAGPAG 1253
Score = 42.4 bits (98), Expect = 3e-04
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1100 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1159
Query: 55 GPRG--GAPRGPHGGAASAQDG 74
GP G G P P G QDG
Sbjct: 1160 GPVGFPGDPGPPGEGGPRGQDG 1181
Score = 41.2 bits (95), Expect = 6e-04
Identities = 31/67 (46%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGR---GPRGA-GAARASGPRGG 59
QG GS G PG G G G +G GE G TG R GPRGA G + A G GG
Sbjct: 700 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGG 759
Query: 60 APRGPHG 66
GPHG
Sbjct: 760 --DGPHG 764
Score = 41.2 bits (95), Expect = 6e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 6 QGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRGAGAARASGP 56
+G G G ADGP GP G+ + GP G G PGE+G+ G +GPRG +
Sbjct: 1078 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1136
Query: 57 RGGAPRGPHGGAASAQDG 74
+ G P P + DG
Sbjct: 1137 QPGEPGPPGPKGPTGDDG 1154
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRG----GAP 61
G G G+ GP GP GP G G G G +GG GP G R GP+G P
Sbjct: 725 GKSGPRGER-GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 783
Query: 62 RGPHG 66
+GP G
Sbjct: 784 KGPPG 788
Score = 40.4 bits (93), Expect = 0.001
Identities = 63/227 (27%), Positives = 79/227 (34%), Gaps = 36/227 (15%)
Query: 2 QAEGQGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
Q G G +GD GP GP GP G AG G AGA G RG G + G
Sbjct: 396 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 455
Query: 60 APRGP----HGGAASAQDGRCP---CGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
P P H G AQ P G R D + P P E+ R +L
Sbjct: 456 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI------GPRGLPGESG-PRGLLGPK 508
Query: 113 AAP-LPRPGAVLKDFTVSGNLLFMSVRDQ----DREGAGRMRVVGWGLGSASPEGQKARD 167
P +P P V G + + + ++G + + G+ P G+K
Sbjct: 509 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 568
Query: 168 LR-----------TPKHKVSEQRPGTPGPPPPEGAQG----DGCRGV 199
+ P H E PGT G P G QG G RGV
Sbjct: 569 GKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGV 615
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/67 (43%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
QG G+ GD G PG P GP G AG PG G G G G GA +GP G
Sbjct: 1225 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG- 1283
Query: 60 APRGPHG 66
P GP G
Sbjct: 1284 -PVGPPG 1289
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G PG PG+ P G G G GE G G GP G + + G
Sbjct: 802 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 861
Query: 64 PHGGAASAQDGRCPCGAR 81
P A +DG P G R
Sbjct: 862 PGPPGAPGKDG--PAGLR 877
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 6 QGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
+G G+ G+ PG GP G G+ G PG G+ G +G G GA+ GP G
Sbjct: 1294 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1353
Query: 59 ---GAPRGPHGGAASAQDG--------RCPCGARRPDSRLLQ-LHITMPFSSPMEAELVR 106
P GP G + G + P G P ++Q L I MP + + R
Sbjct: 1354 PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSR 1413
Query: 107 RILSRDAAP 115
+ +A P
Sbjct: 1414 LMQEDEAIP 1422
Score = 38.1 bits (87), Expect = 0.005
Identities = 64/214 (29%), Positives = 75/214 (35%), Gaps = 45/214 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG-----------GR-GPRGA------ 48
G GS G+ DGP GP GP G+ G PG G G GR GP+G+
Sbjct: 653 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 711
Query: 49 -GAARASGPRG-GAPRGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAEL 104
GA+ G RG GP G G + R P GA P P E L
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 771
Query: 105 VRRILSRDAAPLPR--PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG--WGLGSAS 159
+ P P+ PG KD V Q + G G VVG G
Sbjct: 772 PGP-QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETG 830
Query: 160 PEGQKARDLRTPKHKVSEQRPGTPGPPPPEGAQG 193
P G++ G PGPP P G QG
Sbjct: 831 PMGER----------------GHPGPPGPPGEQG 848
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPR 62
+G GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 913 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 967
Query: 63 GPHGGAASAQD 73
GP G A D
Sbjct: 968 GPPGVAGEDGD 978
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRG----- 47
G G+ G PG PG P G G G PG G TG GP G
Sbjct: 1154 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1213
Query: 48 --AGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRP 83
AG+ + G +GG GA A P G P
Sbjct: 1214 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1251
Score = 37.4 bits (85), Expect = 0.009
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP------------RGGA 60
GP GP GP G G PG G G RGP G G+ A GP GG
Sbjct: 295 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGG 354
Query: 61 PRGPHGGAASAQ 72
+GP A AQ
Sbjct: 355 DKGPVVAAQEAQ 366
Score = 37.4 bits (85), Expect = 0.009
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASA 71
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 380 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 438
Query: 72 Q 72
+
Sbjct: 439 R 439
Score = 37.4 bits (85), Expect = 0.009
Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
QG G TG G PG P PG G+ G PG G G G RG
Sbjct: 823 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 882
Query: 48 ---AGAARASGPRGG-APRGPHGGAAS 70
G A G +G P GP G A S
Sbjct: 883 RGLPGTAGGPGLKGNEGPSGPPGPAGS 909
Score = 37.0 bits (84), Expect = 0.012
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRG 63
+G G +G + GP G P GP G G G G +G +G G G G RG P+G
Sbjct: 718 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 776
Query: 64 PHG 66
P+G
Sbjct: 777 PNG 779
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG G+P GP G G PG+ G G G RG G +GP
Sbjct: 754 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 813
Query: 57 RG-GAPRGPHGGA 68
G GP G A
Sbjct: 814 PGPPGVVGPQGAA 826
Score = 36.2 bits (82), Expect = 0.021
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--G 59
QG G+TG A PG P GP G G G+AGA G +G G G G +G G
Sbjct: 1270 QGRPGATGQAGPPG----PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRG 1325
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
P GP G + P GA P
Sbjct: 1326 LP-GPQGSPGQKGEMGIP-GASGP 1347
Score = 34.3 bits (77), Expect = 0.079
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPG---IPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGP 56
QG G G PG PG +P PG G G G G G GP+G AG G
Sbjct: 775 QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGE 834
Query: 57 RG-GAPRGPHG 66
RG P GP G
Sbjct: 835 RGHPGPPGPPG 845
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
+G G TG GP G G G +GG G G G RG P G GP+G P
Sbjct: 730 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 787
Query: 63 GPHG 66
GP G
Sbjct: 788 GPPG 791
Score = 32.3 bits (72), Expect = 0.30
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G A PG G+ PG G G G+AG G GP G G A A G +
Sbjct: 1244 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEK 1303
Query: 58 G 58
G
Sbjct: 1304 G 1304
Score = 30.8 bits (68), Expect = 0.87
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 578 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 637
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+G G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 622 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 680
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 48.9 bits (115), Expect = 3e-06
Identities = 61/205 (29%), Positives = 76/205 (37%), Gaps = 56/205 (27%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G RG P G
Sbjct: 1095 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1153
Query: 64 PHG----GAASAQDGRC----------PCGARRPDSRLLQLHITMPFSSPMEAELVRRIL 109
P G S + G P G R P + P A+
Sbjct: 1154 PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGP-------------AGPNGAD------ 1194
Query: 110 SRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLR 169
P PG V GNL + + E +G + G G P G++
Sbjct: 1195 ----GPQGPPGGV-------GNLGPPGEKGEPGE-SGSPGIQG-EPGVKGPRGERG---- 1237
Query: 170 TPKHKVSEQRPGTPGPPPPEGAQGD 194
K +PG PGPP P+G GD
Sbjct: 1238 ---EKGESGQPGEPGPPGPKGPTGD 1259
Score = 46.6 bits (109), Expect = 2e-05
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
+G G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1233 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1292
Query: 55 GPRGGAPRGPHGGAASAQDG-RCPCGARRP 83
G P P + ++G P G R P
Sbjct: 1293 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1322
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/62 (46%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
GT G G PG PG P DGP G G PGE G G G G G GP G P GP
Sbjct: 958 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG--GPGLKGNEGPSG--PPGP 1013
Query: 65 HG 66
G
Sbjct: 1014 AG 1015
Score = 46.2 bits (108), Expect = 2e-05
Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G A GPG G P GP G AG PGE GA G GP G P P+GP
Sbjct: 988 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPGPQGP 1040
Query: 65 HGGA 68
G A
Sbjct: 1041 PGAA 1044
Score = 45.1 bits (105), Expect = 4e-05
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
QG+ G G+ A GP GPG P G G AG G GATG GP+G + GP G
Sbjct: 1437 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQ--GPPGHP 1494
Query: 61 PRGPHGGAASAQDGRCPCGARR--PDSRLLQLHITMP 95
GP G + P RR SRL+Q +P
Sbjct: 1495 --GPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIP 1529
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGI-----------------PDGPGGNAGGPGEAGATGGRGPRGA 48
+G G TG PG PG+ GP G+ G PG GA+G +G RG
Sbjct: 771 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 830
Query: 49 GAARASGPRG-GAPRGPHG 66
SGPRG P GP G
Sbjct: 831 SG--KSGPRGERGPTGPRG 847
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
+G G+ GD G PG P PG G AG PG G GG+G +G
Sbjct: 1284 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1343
Query: 48 AGAARASGPRGGAPRGPHG 66
GA +GP G P GP G
Sbjct: 1344 IGAPGKTGPVG--PAGPAG 1360
Score = 42.4 bits (98), Expect = 3e-04
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1207 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1266
Query: 55 GPRG--GAPRGPHGGAASAQDG 74
GP G G P P G QDG
Sbjct: 1267 GPVGFPGDPGPPGEGGPRGQDG 1288
Score = 41.2 bits (95), Expect = 6e-04
Identities = 31/67 (46%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGR---GPRGA-GAARASGPRGG 59
QG GS G PG G G G +G GE G TG R GPRGA G + A G GG
Sbjct: 807 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGG 866
Query: 60 APRGPHG 66
GPHG
Sbjct: 867 --DGPHG 871
Score = 41.2 bits (95), Expect = 6e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 6 QGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRGAGAARASGP 56
+G G G ADGP GP G+ + GP G G PGE+G+ G +GPRG +
Sbjct: 1185 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1243
Query: 57 RGGAPRGPHGGAASAQDG 74
+ G P P + DG
Sbjct: 1244 QPGEPGPPGPKGPTGDDG 1261
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRG----GAP 61
G G G+ GP GP GP G G G G +GG GP G R GP+G P
Sbjct: 832 GKSGPRGER-GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGP 890
Query: 62 RGPHG 66
+GP G
Sbjct: 891 KGPPG 895
Score = 40.4 bits (93), Expect = 0.001
Identities = 63/227 (27%), Positives = 79/227 (34%), Gaps = 36/227 (15%)
Query: 2 QAEGQGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
Q G G +GD GP GP GP G AG G AGA G RG G + G
Sbjct: 503 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 562
Query: 60 APRGP----HGGAASAQDGRCP---CGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
P P H G AQ P G R D + P P E+ R +L
Sbjct: 563 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI------GPRGLPGESG-PRGLLGPK 615
Query: 113 AAP-LPRPGAVLKDFTVSGNLLFMSVRDQ----DREGAGRMRVVGWGLGSASPEGQKARD 167
P +P P V G + + + ++G + + G+ P G+K
Sbjct: 616 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ 675
Query: 168 LR-----------TPKHKVSEQRPGTPGPPPPEGAQG----DGCRGV 199
+ P H E PGT G P G QG G RGV
Sbjct: 676 GKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGV 722
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/67 (43%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
QG G+ GD G PG P GP G AG PG G G G G GA +GP G
Sbjct: 1332 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG- 1390
Query: 60 APRGPHG 66
P GP G
Sbjct: 1391 -PVGPPG 1396
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G PG PG+ P G G G GE G G GP G + + G
Sbjct: 909 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 968
Query: 64 PHGGAASAQDGRCPCGAR 81
P A +DG P G R
Sbjct: 969 PGPPGAPGKDG--PAGLR 984
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 19/129 (14%)
Query: 6 QGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
+G G+ G+ PG GP G G+ G PG G+ G +G G GA+ GP G
Sbjct: 1401 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1460
Query: 59 ---GAPRGPHGGAASAQDG--------RCPCGARRPDSRLLQ-LHITMPFSSPMEAELVR 106
P GP G + G + P G P ++Q L I MP + + R
Sbjct: 1461 PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSR 1520
Query: 107 RILSRDAAP 115
+ +A P
Sbjct: 1521 LMQEDEAIP 1529
Score = 38.1 bits (87), Expect = 0.005
Identities = 64/214 (29%), Positives = 75/214 (35%), Gaps = 45/214 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG-----------GR-GPRGA------ 48
G GS G+ DGP GP GP G+ G PG G G GR GP+G+
Sbjct: 760 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 818
Query: 49 -GAARASGPRG-GAPRGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAEL 104
GA+ G RG GP G G + R P GA P P E L
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 878
Query: 105 VRRILSRDAAPLPR--PGAVLKDFTVSGNLLFMSVRDQDREG-AGRMRVVG--WGLGSAS 159
+ P P+ PG KD V Q + G G VVG G
Sbjct: 879 PGP-QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETG 937
Query: 160 PEGQKARDLRTPKHKVSEQRPGTPGPPPPEGAQG 193
P G++ G PGPP P G QG
Sbjct: 938 PMGER----------------GHPGPPGPPGEQG 955
Score = 38.1 bits (87), Expect = 0.005
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPR 62
+G GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 1020 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 1074
Query: 63 GPHGGAASAQD 73
GP G A D
Sbjct: 1075 GPPGVAGEDGD 1085
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRG----- 47
G G+ G PG PG P G G G PG G TG GP G
Sbjct: 1261 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1320
Query: 48 --AGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRP 83
AG+ + G +GG GA A P G P
Sbjct: 1321 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1358
Score = 37.4 bits (85), Expect = 0.009
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP------------RGGA 60
GP GP GP G G PG G G RGP G G+ A GP GG
Sbjct: 402 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGG 461
Query: 61 PRGPHGGAASAQ 72
+GP A AQ
Sbjct: 462 DKGPVVAAQEAQ 473
Score = 37.4 bits (85), Expect = 0.009
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASA 71
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 487 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 545
Query: 72 Q 72
+
Sbjct: 546 R 546
Score = 37.4 bits (85), Expect = 0.009
Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG---- 47
QG G TG G PG P PG G+ G PG G G G RG
Sbjct: 930 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 989
Query: 48 ---AGAARASGPRGG-APRGPHGGAAS 70
G A G +G P GP G A S
Sbjct: 990 RGLPGTAGGPGLKGNEGPSGPPGPAGS 1016
Score = 37.0 bits (84), Expect = 0.012
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRG 63
+G G +G + GP G P GP G G G G +G +G G G G RG P+G
Sbjct: 825 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 883
Query: 64 PHG 66
P+G
Sbjct: 884 PNG 886
Score = 36.6 bits (83), Expect = 0.016
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG G+P GP G G PG+ G G G RG G +GP
Sbjct: 861 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 920
Query: 57 RG-GAPRGPHGGA 68
G GP G A
Sbjct: 921 PGPPGVVGPQGAA 933
Score = 36.2 bits (82), Expect = 0.021
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--G 59
QG G+TG A PG P GP G G G+AGA G +G G G G +G G
Sbjct: 1377 QGRPGATGQAGPPG----PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRG 1432
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
P GP G + P GA P
Sbjct: 1433 LP-GPQGSPGQKGEMGIP-GASGP 1454
Score = 34.3 bits (77), Expect = 0.079
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPG---IPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGP 56
QG G G PG PG +P PG G G G G G GP+G AG G
Sbjct: 882 QGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGE 941
Query: 57 RG-GAPRGPHG 66
RG P GP G
Sbjct: 942 RGHPGPPGPPG 952
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
+G G TG GP G G G +GG G G G RG P G GP+G P
Sbjct: 837 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 894
Query: 63 GPHG 66
GP G
Sbjct: 895 GPPG 898
Score = 32.3 bits (72), Expect = 0.30
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G A PG G+ PG G G G+AG G GP G G A A G +
Sbjct: 1351 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEK 1410
Query: 58 G 58
G
Sbjct: 1411 G 1411
Score = 30.8 bits (68), Expect = 0.87
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 685 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 744
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+G G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 729 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 787
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 48.5 bits (114), Expect = 4e-06
Identities = 59/204 (28%), Positives = 77/204 (37%), Gaps = 16/204 (7%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G+G G G PG PG P G G+ G PG G+ G RG G G A GP G P G
Sbjct: 464 GKGKDGEPGLRGSPGLPG-PLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSG--PPGD 520
Query: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLK 124
G S P G + P R SP + L+ + + D P P L
Sbjct: 521 KGSPGSRGLPGFP-GPQGPAGR----DGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLP 575
Query: 125 DFTVSGNLLFMSVRD--QDREGAGRMRVVGWGLGSASPEGQKARDLRTPK--HKVSEQRP 180
F + R+ + ++G + G A P+G + + K + P
Sbjct: 576 GFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHP 635
Query: 181 GTP---GPPPPEGAQG-DGCRGVA 200
G P GPP G G DG G A
Sbjct: 636 GVPGFMGPPGNPGPPGADGIAGAA 659
Score = 46.2 bits (108), Expect = 2e-05
Identities = 32/71 (45%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASG 55
A+GQ G G+ G A PG PG P GP G+ G PG G G G RG GAA G
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEG 443
Query: 56 PRGGAPRGPHG 66
G P GP G
Sbjct: 444 SPG--PVGPRG 452
Score = 45.8 bits (107), Expect = 3e-05
Identities = 28/61 (45%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
G G GD PG PG GP GN G PG G G GP G G+ GP G P+GP
Sbjct: 624 GEVGQKGDQGHPGVPGFM-GPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPG--PQGPS 680
Query: 66 G 66
G
Sbjct: 681 G 681
Score = 42.4 bits (98), Expect = 3e-04
Identities = 39/103 (37%), Positives = 41/103 (39%), Gaps = 27/103 (26%)
Query: 6 QGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRGA----GA 50
QG G GD PG PG+ P GP G G G GA G G GA GA
Sbjct: 349 QGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGA 408
Query: 51 ARASGPRG--GAP--RGPHG--------GAASAQDGRCPCGAR 81
SGP G GAP RG G GAA + P G R
Sbjct: 409 PGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPR 451
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA----- 60
+G G GD GP GP P GP G G G G+ G GP G + S G+
Sbjct: 749 EGLPGKDGDT-GPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPG 807
Query: 61 ---PRGPHG 66
PRGP G
Sbjct: 808 FLGPRGPPG 816
Score = 41.6 bits (96), Expect = 5e-04
Identities = 59/204 (28%), Positives = 73/204 (35%), Gaps = 28/204 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G GD PGG G P G+ G PG G TG GP+G +GP G P GP
Sbjct: 842 RGDPGIKGDKGPPGGKGQP----GDPGIPGHKGHTGLMGPQGLPG--ENGPVG--PPGPP 893
Query: 66 GGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRIL--------SRDAAPLP 117
G Q G P L+ I +E L + S P P
Sbjct: 894 G-----QPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGP 948
Query: 118 RPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSE 177
PG KD + G M + R G G + +G G K D P +
Sbjct: 949 -PGPPGKD-GLPGRAGPMG--EPGRPGQGGLEGPSGPIGPKGERGAKG-DPGAPGVGLRG 1003
Query: 178 QR--PGTPGPPPPEGAQGDGCRGV 199
+ PG PG P G DG G+
Sbjct: 1004 EMGPPGIPGQPGEPGYAKDGLPGI 1027
Score = 41.2 bits (95), Expect = 6e-04
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G TGD+ PG G G G G PG+ G TG GP+G R + G+P P
Sbjct: 723 GFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSP 782
Query: 65 HGGAASAQDGR 75
S G+
Sbjct: 783 GEPGPSGTPGQ 793
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/80 (37%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG-------PRGAGAARASGPR 57
G G G PG GP P GP G G PGE G G G P AG GP
Sbjct: 657 GAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPE 716
Query: 58 GGAPRGPHGGAASAQDGRCP 77
G RGP G D P
Sbjct: 717 GA--RGPPGFKGHTGDSGAP 734
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
G G G+A PG PG P G G+ G GE G G +G RG G A +GP G
Sbjct: 277 GRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPG 331
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA------------- 53
G G G A PG PG P+G G G G G +G GPRG A
Sbjct: 699 GPPGEPGKAGEPGLPG-PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGD 757
Query: 54 SGPRGGAPRGPHG 66
+GP G P+GP G
Sbjct: 758 TGPTG--PQGPQG 768
Score = 39.7 bits (91), Expect = 0.002
Identities = 50/203 (24%), Positives = 67/203 (33%), Gaps = 28/203 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
+G G G PG PG PG G G PG G G RGP G + + G
Sbjct: 770 RGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV 829
Query: 61 P--------RGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRD 112
P +G G D P G +P +P + + L +
Sbjct: 830 PGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDP------GIPGHKGHTGLMGPQGLPGE 883
Query: 113 AAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPK 172
P+ PG G F +R + R++ LG + P
Sbjct: 884 NGPVGPPGP-------PGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPP 936
Query: 173 --HKVSEQRPGTPGPPPPEGAQG 193
K S+ RPG PGPP +G G
Sbjct: 937 AYMKSSQGRPGPPGPPGKDGLPG 959
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/94 (38%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
Q QG G G PG PG P DG G AG PG G+ G GP G +G G
Sbjct: 628 QKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG 687
Query: 56 PRGGAPR----GPHG--GAASAQDGRCPCGARRP 83
G R GP G G A P GAR P
Sbjct: 688 EEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGP 721
Score = 37.7 bits (86), Expect = 0.007
Identities = 31/86 (36%), Positives = 35/86 (40%), Gaps = 25/86 (29%)
Query: 6 QGTGGSTGDADGPGGPGIP--------------DGPGGNAGGPGEAGATGGRGPRG---- 47
+GT G G+A PG PG P DG G G G G G GP G
Sbjct: 590 EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGP 649
Query: 48 ---AGAARASGPRG--GAP--RGPHG 66
G A A+GP G G+P GP G
Sbjct: 650 PGADGIAGAAGPPGIQGSPGKEGPPG 675
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G GD G G+P G G+ G GEAG G G G + PR +GP G
Sbjct: 295 GVRGEKGDQGEKGELGLP-GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 353
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
+GT G G+ G G +G G G G+ GA G GP G G G RG G P G
Sbjct: 424 RGTPGKDGERGEKGAAG-EEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLP-G 481
Query: 64 PHG 66
P G
Sbjct: 482 PLG 484
Score = 32.3 bits (72), Expect = 0.30
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G PG PG+ G G G PG G G G G GP+G H
Sbjct: 983 GPKGERGAKGDPGAPGV--GLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHP 1040
Query: 67 G 67
G
Sbjct: 1041 G 1041
Score = 32.0 bits (71), Expect = 0.39
Identities = 57/218 (26%), Positives = 72/218 (33%), Gaps = 65/218 (29%)
Query: 6 QGTGGSTGDADGPGGPGI---------------PDGPGGNAGGPGEAGATGG---RGPRG 47
+G G G A PG PG P G G+ G PGE G G GP+G
Sbjct: 318 RGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQG 377
Query: 48 AGAARASGPRGG-APRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVR 106
+GP G G HG +A + P H+ P
Sbjct: 378 -----PTGPPGAKGQEGAHGAPGAAGNPGAPG------------HVGAP----------- 409
Query: 107 RILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQK-A 165
P PG+V + L +D +R G G G P G A
Sbjct: 410 -------GPSGPPGSV-----GAPGLRGTPGKDGERGEKGAAGEEG-SPGPVGPRGDPGA 456
Query: 166 RDLRTPKHKVSEQRP---GTPGPPPPEGAQGD-GCRGV 199
L P K + P G+PG P P G +GD G G+
Sbjct: 457 PGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGI 494
Score = 31.6 bits (70), Expect = 0.51
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 24/80 (30%)
Query: 6 QGTGGSTGDADGPGGPGIP---------------DGPGGNAGGPG---------EAGATG 41
+G G G+A G PG+P GP G G PG G G
Sbjct: 315 KGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELG 374
Query: 42 GRGPRGAGAARASGPRGGAP 61
+GP G A+ GAP
Sbjct: 375 PQGPTGPPGAKGQEGAHGAP 394
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 16/78 (20%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPD----------------GPGGNAGGPGEAGATGGRGPR 46
A G G G G PG PG P GP G+ G PG G G P
Sbjct: 996 APGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPS 1055
Query: 47 GAGAARASGPRGGAPRGP 64
+ R G +GP
Sbjct: 1056 QCAYFASLAARPGNVKGP 1073
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGG 59
G GG G + GP GP G G+ G PG G G GP G G A+ P
Sbjct: 971 GQGGLEGPS-GPIGPKGERGAKGDPGAPG-VGLRGEMGPPGIPGQPGEPGYAKDGLPGIP 1028
Query: 60 APRGPHGGA 68
P+G G A
Sbjct: 1029 GPQGETGPA 1037
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 48.1 bits (113), Expect = 5e-06
Identities = 39/100 (39%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G+ G+ GPG PG GP G AG PG G G GPRG+ GAA A G
Sbjct: 1997 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGE 2056
Query: 57 RG--------GAP--RGPHGGAASAQDGRCPCGARRPDSR 86
RG G P GP GG + R P G D R
Sbjct: 2057 RGRTGPLGRKGEPGEPGPKGGIGN----RGPRGETGDDGR 2092
Score = 46.2 bits (108), Expect = 2e-05
Identities = 58/220 (26%), Positives = 83/220 (37%), Gaps = 39/220 (17%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
++ +G G TGD G G+P G G GGPGE G GG G RG A+ G +GG +
Sbjct: 1958 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAK--GNKGGPGQ 2011
Query: 63 GPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSS------PMEAELVRRILSRDAAPL 116
G + + P G P + + I+ P S P E + +
Sbjct: 2012 PGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGE 2071
Query: 117 PRPGAVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGW-------------------GL-G 156
P P + + G D R+G G G GL G
Sbjct: 2072 PGPKGGIGNRGPRG-----ETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNG 2126
Query: 157 SASPEGQKARDLRTPKHKVSEQR--PGTPGPPPPEGAQGD 194
+ P+G + R + + Q+ PG PGP P+G +GD
Sbjct: 2127 TTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGD 2166
Score = 44.7 bits (104), Expect = 6e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G+ G G G PG P GP GN G PG G TG +G RG +G G +G
Sbjct: 2093 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 2151
Query: 60 ----APRGPHGGAASAQD---------GRCPC 78
P GP G + D +CPC
Sbjct: 2152 PGYPGPAGPKGNRGDSIDQCALIQSIKDKCPC 2183
Score = 36.2 bits (82), Expect = 0.021
Identities = 53/203 (26%), Positives = 74/203 (36%), Gaps = 28/203 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G G P PG ++ G G TG GP G R P G G +
Sbjct: 1933 KGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 1991
Query: 66 GGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKD 125
GG R P GA+ P E E R A P PG ++ +
Sbjct: 1992 GGFGR----RGPPGAKGNKGG--------PGQPGFEGEQGTRGAQGPAGPAGPPG-LIGE 2038
Query: 126 FTVSG----NLLFMSVRDQDREG-AGRMRVVG-----WGLGSASPEGQKARDLR----TP 171
+SG + ++ R G GR G G+G+ P G+ D R +
Sbjct: 2039 QGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSE 2098
Query: 172 KHKVSEQRPGTPGPPPPEGAQGD 194
+ + G PG P P+G G+
Sbjct: 2099 GRRGKKGERGFPGYPGPKGNPGE 2121
Score = 32.3 bits (72), Expect = 0.30
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G G GIP G G G PG+ G G RGP G +
Sbjct: 1832 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQ 1876
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
Q +G GS G PG G PG + GGPGE G G G +G G G R
Sbjct: 1833 QRGDRGPIGSIGPKGIPGEDGYRGYPG-DEGGPGERGPPGVNGTQGFQGCPGQRGVKGSR 1891
Query: 58 G 58
G
Sbjct: 1892 G 1892
Score = 30.8 bits (68), Expect = 0.87
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ DG G G G++G G G G +GPRG R G P P
Sbjct: 1895 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 1954
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,881,781
Number of Sequences: 37866
Number of extensions: 915667
Number of successful extensions: 30499
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 795
Number of HSP's that attempted gapping in prelim test: 6739
Number of HSP's gapped (non-prelim): 11407
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.