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Search of human proteins with 169165327
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166135 PREDICTED: hypothetical protein [Homo sapiens] 326 4e-90
gi|169165327 PREDICTED: hypothetical protein [Homo sapiens] 326 4e-90
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 47 7e-06
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 47 7e-06
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 47 7e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 1e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 44 4e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 44 4e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 44 6e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 7e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 43 1e-04
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 43 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 41 5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 41 5e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 8e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.001
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 39 0.001
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 39 0.001
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 39 0.002
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 39 0.002
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 39 0.002
gi|18641360 collectin sub-family member 12 [Homo sapiens] 39 0.002
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 39 0.002
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 38 0.003
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 38 0.003
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 38 0.003
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 38 0.003
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 38 0.003
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 38 0.003
>gi|169166135 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 326 bits (836), Expect = 4e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT
Sbjct: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR
Sbjct: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
Query: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL
Sbjct: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
>gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 326 bits (836), Expect = 4e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT
Sbjct: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR
Sbjct: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
Query: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL
Sbjct: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 47.0 bits (110), Expect = 7e-06
Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
P GAR +G G AGPPG P PP GL G + SGG WS + D
Sbjct: 990 PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 1046
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
G L G+ G P L +GA +P P PG E + G +G G + S
Sbjct: 1047 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 1100
Query: 120 RGLRAAKGDSGVG 132
RG + G GVG
Sbjct: 1101 RGEKGDPGKDGVG 1113
Score = 33.1 bits (74), Expect = 0.098
Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)
Query: 12 GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
G PG G GPPG + PP H L SG GG D E + R F
Sbjct: 853 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 904
Query: 67 TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
G G P L P G A LP P R G GL G PG
Sbjct: 905 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 959
Query: 116 RQRSRGLRAAKGDSG 130
R+ G KG G
Sbjct: 960 REGPPGRTGQKGSLG 974
Score = 32.7 bits (73), Expect = 0.13
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)
Query: 3 PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
P+G R G G PG+ G GPPG ++ PE P G
Sbjct: 1094 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 1153
Query: 40 HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
GP P G G + G G+ ++ G LG + A G GP
Sbjct: 1154 -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 1212
Query: 93 R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
R P P RPG+ L+G +G G+R G G
Sbjct: 1213 RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 1258
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)
Query: 12 GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
G PGR AGPPG+ L P LP P+ P G G
Sbjct: 764 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 794
Query: 71 WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
L T P P GP R P PG + G G Q PG G + K
Sbjct: 795 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 852
Query: 127 GDSGVGIR 134
GD GVG R
Sbjct: 853 GDPGVGER 860
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 47.0 bits (110), Expect = 7e-06
Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
P GAR +G G AGPPG P PP GL G + SGG WS + D
Sbjct: 575 PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 631
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
G L G+ G P L +GA +P P PG E + G +G G + S
Sbjct: 632 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 685
Query: 120 RGLRAAKGDSGVG 132
RG + G GVG
Sbjct: 686 RGEKGDPGKDGVG 698
Score = 33.1 bits (74), Expect = 0.098
Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)
Query: 12 GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
G PG G GPPG + PP H L SG GG D E + R F
Sbjct: 438 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 489
Query: 67 TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
G G P L P G A LP P R G GL G PG
Sbjct: 490 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 544
Query: 116 RQRSRGLRAAKGDSG 130
R+ G KG G
Sbjct: 545 REGPPGRTGQKGSLG 559
Score = 32.7 bits (73), Expect = 0.13
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)
Query: 3 PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
P+G R G G PG+ G GPPG ++ PE P G
Sbjct: 679 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 738
Query: 40 HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
GP P G G + G G+ ++ G LG + A G GP
Sbjct: 739 -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 797
Query: 93 R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
R P P RPG+ L+G +G G+R G G
Sbjct: 798 RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 843
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)
Query: 12 GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
G PGR AGPPG+ L P LP P+ P G G
Sbjct: 349 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 379
Query: 71 WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
L T P P GP R P PG + G G Q PG G + K
Sbjct: 380 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 437
Query: 127 GDSGVGIR 134
GD GVG R
Sbjct: 438 GDPGVGER 445
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 47.0 bits (110), Expect = 7e-06
Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
P GAR +G G AGPPG P PP GL G + SGG WS + D
Sbjct: 755 PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 811
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
G L G+ G P L +GA +P P PG E + G +G G + S
Sbjct: 812 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 865
Query: 120 RGLRAAKGDSGVG 132
RG + G GVG
Sbjct: 866 RGEKGDPGKDGVG 878
Score = 33.1 bits (74), Expect = 0.098
Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)
Query: 12 GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
G PG G GPPG + PP H L SG GG D E + R F
Sbjct: 618 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 669
Query: 67 TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
G G P L P G A LP P R G GL G PG
Sbjct: 670 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 724
Query: 116 RQRSRGLRAAKGDSG 130
R+ G KG G
Sbjct: 725 REGPPGRTGQKGSLG 739
Score = 32.7 bits (73), Expect = 0.13
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)
Query: 3 PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
P+G R G G PG+ G GPPG ++ PE P G
Sbjct: 859 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 918
Query: 40 HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
GP P G G + G G+ ++ G LG + A G GP
Sbjct: 919 -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 977
Query: 93 R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
R P P RPG+ L+G +G G+R G G
Sbjct: 978 RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 1023
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)
Query: 12 GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
G PGR AGPPG+ L P LP P+ P G G
Sbjct: 529 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 559
Query: 71 WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
L T P P GP R P PG + G G Q PG G + K
Sbjct: 560 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 617
Query: 127 GDSGVGIR 134
GD GVG R
Sbjct: 618 GDPGVGER 625
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.2 bits (108), Expect = 1e-05
Identities = 43/134 (32%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+G P G G +G GPPG + + LP GG +P G + A G
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGP--QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG 673
Query: 63 RCFLTGAFWTGVLGTSPAPAL--GAGP----CALGARLPRCPSRPGLEALRGLRGFQPGR 116
+ G G + AP L GAGP GA P P PG GL+G PG
Sbjct: 674 KGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP--PGPPGAAGTPGLQG-MPGE 730
Query: 117 QRSRGLRAAKGDSG 130
+ G KGD G
Sbjct: 731 RGGLGSPGPKGDKG 744
Score = 42.0 bits (97), Expect = 2e-04
Identities = 46/138 (33%), Positives = 54/138 (39%), Gaps = 16/138 (11%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEAL----PPLGGLEHGPLRPSGGGGWSEDDAED 58
P G P G RGS G PGAA P A PP GP PSG G D
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAA-GFPGARGLPGPPGSNGNPGPPGPSGSPG---KDGPP 905
Query: 59 VTAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF----- 112
AG G+ +G G + P P A G P P G+ + G RG
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP--PGAPGPLGIAGITGARGLAGPPG 963
Query: 113 QPGRQRSRGLRAAKGDSG 130
PG + S G + KG+SG
Sbjct: 964 MPGPRGSPGPQGVKGESG 981
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/134 (30%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-AALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
P G PAG +G G PG + P P G E GP P+G G + E
Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERG-ETGPPGPAGFPGAPGQNGEPGGK 824
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCA----LGARLPR-CPSRPGLEALRGLRGFQPGR 116
G G G P G+GP G + R P PG G RG PG
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL-PGP 883
Query: 117 QRSRGLRAAKGDSG 130
S G G SG
Sbjct: 884 PGSNGNPGPPGPSG 897
Score = 35.8 bits (81), Expect = 0.015
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 9/133 (6%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-EHGPLRPSGG-GGWSEDDAEDVT 60
P G PAG RG +GP G A A P G GP P G G E A +
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPA----GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPS-RPGLEALRGLRG--FQPGRQ 117
R F G G + P G R P PS PG + G G PG +
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPR 1166
Query: 118 RSRGLRAAKGDSG 130
+RG R ++G G
Sbjct: 1167 GNRGERGSEGSPG 1179
Score = 35.0 bits (79), Expect = 0.026
Identities = 40/129 (31%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P GA P+G G +G PG LP G++ GP G G D G
Sbjct: 217 PPGAIGPSGPAGKDGESGRPGRP--GERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRNG 273
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSRG 121
TGA G+ G + P P +G R P RPGL G RG G + S G
Sbjct: 274 EKGETGA--PGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARG-NDGARGSDG 330
Query: 122 LRAAKGDSG 130
G G
Sbjct: 331 QPGPPGPPG 339
Score = 32.0 bits (71), Expect = 0.22
Identities = 38/132 (28%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 3 PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
P G GG G AG PGA L P G P G G ++ A+
Sbjct: 385 PPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPG 444
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQ--PGRQR 118
R A GV G P GA LP G RG G PG +
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504
Query: 119 SRGLRAAKGDSG 130
G R A G +G
Sbjct: 505 PAGERGAPGPAG 516
Score = 29.3 bits (64), Expect = 1.4
Identities = 45/161 (27%), Positives = 53/161 (32%), Gaps = 41/161 (25%)
Query: 3 PEGARAPAG--------GGPG-RGSAGPPGAALREPEALPPLGGLEH---GPLRPSGGG- 49
P G R AG GGPG RG G PG + + PP E GP PSG
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG 573
Query: 50 -----GWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP------ 98
G+ D G+ G G P P G P+ P
Sbjct: 574 QPGVMGFPGPKGNDGAPGK--------NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 99 -------SRPGLEALRGL--RGFQPGRQRSRGLRAAKGDSG 130
PG + L+GL G PG G KGD+G
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREP--EALPPLGGLEHGPLRPSGGG 49
G + PAG G AGP GAA EP + +P G+ P P G G
Sbjct: 501 GEKGPAGERGAPGPAGPRGAA-GEPGRDGVPGGPGMRGMPGSPGGPG 546
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 44.3 bits (103), Expect = 4e-05
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
PEGAR P G G +G PG L E LP G + GP P G G
Sbjct: 715 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDG-DTGPTGPQGPQGPRGPP 773
Query: 56 AEDVTAGRCFLTGAFWT----GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG 111
++ + G G T G G + +P L P LG R P P PG + + G G
Sbjct: 774 GKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL---PGFLGPRGP--PGEPGEKGVPGKEG 828
Query: 112 FQPGRQRSRGLRAAKGDSGV 131
PG+ G + +GD G+
Sbjct: 829 V-PGKPGEPGFKGERGDPGI 847
Score = 34.7 bits (78), Expect = 0.034
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
M P G P G G+AGPPG + PP GP PSG G ++ ++
Sbjct: 641 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPP------GPQGPSGLPGIPGEEGKEGR 694
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
G+ P P G P PG E RG GF+ G
Sbjct: 695 DGK---------------PGPPGEPGKAGE-------PGLPGPEGARGPPGFK-GHTGDS 731
Query: 121 GLRAAKGDSG 130
G +G+SG
Sbjct: 732 GAPGPRGESG 741
Score = 32.3 bits (72), Expect = 0.17
Identities = 39/139 (28%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA--------LREPEALPPLGGLEHGPLRPSGGGGWSED 54
P+G P G G+ G PGAA + P P G + LR G G +
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR--GTPGKDGE 432
Query: 55 DAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
E AG G G G AP L P P PGL G +G
Sbjct: 433 RGEKGAAGEEGSPGP--VGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKG-DR 489
Query: 115 GRQRSRGLRAAKGDSGVGI 133
G G ++GD G+G+
Sbjct: 490 GAPGIPGSPGSRGDPGIGV 508
Score = 31.2 bits (69), Expect = 0.37
Identities = 33/119 (27%), Positives = 40/119 (33%), Gaps = 20/119 (16%)
Query: 12 GGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFW 71
G PG G AGPPG P P G G G AGR L+
Sbjct: 502 GDPGIGVAGPPG-----PSGPP-------GDKGSPGSRGLPGFPGPQGPAGRDGLSSLLS 549
Query: 72 TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G + P P P PGL +G +G PG+ G KG++G
Sbjct: 550 PGDINLLAKDVCNDCP-------PGPPGLPGLPGFKGDKGV-PGKPGREGTEGKKGEAG 600
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 44.3 bits (103), Expect = 4e-05
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
PEGAR P G G +G PG L E LP G + GP P G G
Sbjct: 1268 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDG-DTGPTGPQGPQGPRGPP 1326
Query: 56 AEDVTAGRCFLTGAFWT----GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG 111
++ + G G T G G + +P L P LG R P P PG + + G G
Sbjct: 1327 GKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL---PGFLGPRGP--PGEPGEKGVPGKEG 1381
Query: 112 FQPGRQRSRGLRAAKGDSGV 131
PG+ G + +GD G+
Sbjct: 1382 V-PGKPGEPGFKGERGDPGI 1400
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 12 GGPGRGSAGPPG-AALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDVTAGRCFLTG 68
G PG G AGPPG + + P GL GP P+G G + E G+ L+
Sbjct: 1040 GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSS 1099
Query: 69 AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGD 128
G + P P P PGL +G +G PG+ G KG+
Sbjct: 1100 LLSPGDINLLAKDVCNDCP-------PGPPGLPGLPGFKGDKGV-PGKPGREGTEGKKGE 1151
Query: 129 SG 130
+G
Sbjct: 1152 AG 1153
Score = 34.7 bits (78), Expect = 0.034
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
M P G P G G+AGPPG + PP GP PSG G ++ ++
Sbjct: 1194 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPP------GPQGPSGLPGIPGEEGKEGR 1247
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
G+ P P G P PG E RG GF+ G
Sbjct: 1248 DGK---------------PGPPGEPGKAGE-------PGLPGPEGARGPPGFK-GHTGDS 1284
Query: 121 GLRAAKGDSG 130
G +G+SG
Sbjct: 1285 GAPGPRGESG 1294
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/133 (27%), Positives = 43/133 (32%), Gaps = 39/133 (29%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVT 60
P G P G G AGPPG P ++ GL E G P G G
Sbjct: 624 PSGVAGPQGEKGDVGPAGPPGV----PGSVVQQEGLKGEQGAPGPRGHQG---------- 669
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ--PGRQR 118
+P P GP R PGL+ LRG +G PG
Sbjct: 670 -----------------APGPPGARGPIGPEGR----DGPPGLQGLRGKKGDMGPPGIPG 708
Query: 119 SRGLRAAKGDSGV 131
GL+ G GV
Sbjct: 709 LLGLQGPPGPPGV 721
Score = 28.5 bits (62), Expect = 2.4
Identities = 33/128 (25%), Positives = 38/128 (29%), Gaps = 35/128 (27%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G P G G GPPG G + ED G
Sbjct: 745 PPGPTGPPGKDGPNGPPGPPGTK------------------------GEPGERGEDGLPG 780
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
+ L G L P AG P PG +RG +G Q G + GL
Sbjct: 781 KPGLRGEIGEQGLAGRPGEKGEAG----------LPGAPGFPGVRGEKGDQ-GEKGELGL 829
Query: 123 RAAKGDSG 130
KGD G
Sbjct: 830 PGLKGDRG 837
Score = 28.1 bits (61), Expect = 3.2
Identities = 44/126 (34%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+G P G G+ G PGAA P A +G GP P G G G
Sbjct: 893 PQGPTGPPGAKGQEGAHGAPGAA-GNPGAPGHVGA--PGPSGPPGSVGAPGLRGTPGKDG 949
Query: 63 RCFLTGAFWTGVLGTSPAPALGAG-PCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRG 121
GA G G SP P G P A G LP P + G + GLRG PG G
Sbjct: 950 ERGEKGA--AGEEG-SPGPVGPRGDPGAPG--LPGPPGK-GKDGEPGLRG-SPGLPGPLG 1002
Query: 122 LRAAKG 127
+AA G
Sbjct: 1003 TKAACG 1008
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 43.9 bits (102), Expect = 6e-05
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G + G +G G PG P P + GL+ G L P G G+ D G+
Sbjct: 1254 QGLKGERGSEGNKGKKGAPG-----PSGKPGIPGLQ-GLLGPKGIQGYHGADGISGNPGK 1307
Query: 64 CFLTGAFWT-GVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGF--QPGRQRS 119
G G+ G L P G + P PG++ +G +G QPG Q
Sbjct: 1308 IGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGK 1367
Query: 120 RGLRAAKGDSG 130
RG R A+GD G
Sbjct: 1368 RGHRGAQGDQG 1378
Score = 31.2 bits (69), Expect = 0.37
Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 22/140 (15%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGG 50
+G R P G G PG RG G PG R P L GL+ G + P G G
Sbjct: 950 QGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQ-GDVGPPGEMG 1008
Query: 51 WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
+ +G GA G +GT+ + G G L P P GL+ GL+
Sbjct: 1009 MEGPPGTEGESGLQGEPGA--KGDVGTAGSVG-GTGEPGLRGE-PGAPGEEGLQGKDGLK 1064
Query: 111 GFQPGRQRSRGLRAAKGDSG 130
G G RGL G+ G
Sbjct: 1065 GVPGG----RGLPGEDGEKG 1080
Score = 26.9 bits (58), Expect = 7.0
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 25/152 (16%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
G P G RG GPPG + E P E GP G G++ + + G
Sbjct: 783 GPEGPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEV 842
Query: 65 FLTGAFW-------------TGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLE 104
G G+ G+ P LG + P P PG
Sbjct: 843 GDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPI 902
Query: 105 ALRGLRGF-----QPGRQRSRGLRAAKGDSGV 131
GL G PG Q +G R ++G G+
Sbjct: 903 GPLGLPGHVGARGPPGSQGPKGQRGSRGPDGL 934
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.5 bits (101), Expect = 7e-05
Identities = 42/128 (32%), Positives = 48/128 (37%), Gaps = 32/128 (25%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G P G +G GPPG EP A P+ GP P G G + DD E G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEP-GEPGASGPM-----GPRGPPGPPGKNGDDGEAGKPG 239
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
R P P GAR P GL ++G RGF GL
Sbjct: 240 R-----------------PGERGPPGPQGAR--GLPGTAGLPGMKGHRGFS-------GL 273
Query: 123 RAAKGDSG 130
AKGD+G
Sbjct: 274 DGAKGDAG 281
Score = 43.1 bits (100), Expect = 9e-05
Identities = 44/139 (31%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+GA AG G AGPPG P A+ G E GP P G G E G
Sbjct: 325 DGATGAAGPPGPTGPAGPPGF----PGAVGAKG--EAGPQGPRGSEGPQGVRGEPGPPGP 378
Query: 64 CFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
G G G + AP + P GAR P P PG +PG
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA 438
Query: 117 QRSRGLRAAKGDSG-VGIR 134
S+G AKG+ G VG++
Sbjct: 439 PGSKGDTGAKGEPGPVGVQ 457
Score = 40.8 bits (94), Expect = 5e-04
Identities = 48/146 (32%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA-------LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
P GA PAG G+ GPPG A + P P GL GP P G G +
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-GPAGPPGEAGKPGEQ 661
Query: 56 AEDVTAGRCFLTGAFW-------TGVLG-TSPAPALGA--GPCALGARLPR-CPSRPGLE 104
G +GA GV G PA GA P GA+ P PG +
Sbjct: 662 GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 721
Query: 105 ALRGLRGFQPGRQRSRGLRAAKGDSG 130
GL+G PG + + GL KGD G
Sbjct: 722 GAPGLQG-MPGERGAAGLPGPKGDRG 746
Score = 39.3 bits (90), Expect = 0.001
Identities = 48/137 (35%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
G R P G G AGPPG + RE G E P R G G D E AG
Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAP-----GAEGSPGR-DGSPGAKGDRGETGPAGPP 1045
Query: 65 FLTGAFW----TGVLGTS-----PAPALGAGPCA-LGARLPRCPSRPGLEALRGLRGFQP 114
GA G G S PA AGP +GAR P P P RG +G +
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP-----RGDKG-ET 1099
Query: 115 GRQRSRGLRAAKGDSGV 131
G Q RG++ +G SG+
Sbjct: 1100 GEQGDRGIKGHRGFSGL 1116
Score = 37.7 bits (86), Expect = 0.004
Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+GA G RG GPPGA P G + GP P+G G + + G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAV--GPAGKDGEAGAQ-GPPGPAGPAGERGEQGPAGSPG 641
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--------QP 114
L G G G + P P LGA PG RG RGF P
Sbjct: 642 FQGLPGP--AGPPGEAGKPGEQGVPGDLGA--------PGPSGARGERGFPGERGVQGPP 691
Query: 115 GRQRSRGLRAAKGDSG 130
G RG A G+ G
Sbjct: 692 GPAGPRGANGAPGNDG 707
Score = 37.4 bits (85), Expect = 0.005
Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
P G P G G GS G PGA + P+ G GP P G G + E
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGLP 535
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR--LPRCPSRPGLEALRGLRGFQPGRQRS 119
G LTG+ SP P GP + P P PG G+ GF PG + +
Sbjct: 536 GAKGLTGS------PGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF-PGPKGA 588
Query: 120 RGLRAAKGDSGV 131
G G+ GV
Sbjct: 589 AGEPGKAGERGV 600
Score = 36.2 bits (82), Expect = 0.012
Identities = 43/132 (32%), Positives = 50/132 (37%), Gaps = 38/132 (28%)
Query: 10 AGGGPG----RGSAGPPGAALREPEALPPLGGLEH--GPLRPSGGGGWSEDDAEDVTAGR 63
A G PG RG AGP GA + P G+ GP+ P G G D E +G
Sbjct: 735 AAGLPGPKGDRGDAGPKGA-----DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP 789
Query: 64 CFLTGAFWTGVLGT-----SPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQR 118
TGA G G P PA AGP PG + QPG +
Sbjct: 790 AGPTGA--RGAPGDRGEPGPPGPAGFAGP-------------PGADG-------QPGAKG 827
Query: 119 SRGLRAAKGDSG 130
G AKGD+G
Sbjct: 828 EPGDAGAKGDAG 839
Score = 35.4 bits (80), Expect = 0.020
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 3 PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
P+G + P G G PG RG GPPG + EA P E GP P G G
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 257
Query: 54 DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ 113
TAG + G L + A AGP P PG RGL G +
Sbjct: 258 ------TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS-PGENGAPGQMGPRGLPG-E 309
Query: 114 PGRQRSRGLRAAKGDSG 130
GR + G A+G+ G
Sbjct: 310 RGRPGAPGPAGARGNDG 326
Score = 35.0 bits (79), Expect = 0.026
Identities = 44/145 (30%), Positives = 53/145 (36%), Gaps = 17/145 (11%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G P G G+ G PG A + +A PP GP P G G +AG
Sbjct: 810 PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAG 869
Query: 63 RCFLTGAFWTGVLGT--SPAPALGAGPCALGARLPRCPSRPGLEALRGLRG--FQPGRQR 118
TG + G G P P+ AGP P P G E +G RG GR
Sbjct: 870 PPGATG--FPGAAGRVGPPGPSGNAGP-------PGPPGPAGKEGGKGPRGETGPAGRPG 920
Query: 119 SRGLRAAKGDSGVGIRRKGSTRREG 143
G G +G KGS +G
Sbjct: 921 EVGPPGPPGPAG----EKGSPGADG 941
Score = 34.7 bits (78), Expect = 0.034
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVTA 61
EG + G RG AGPPG + +P GL GP P G G + A ++
Sbjct: 111 EGPKGDTGPRGPRGPAGPPGR-----DGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSY 165
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRG 121
G + TG + P P +GP LP P PG + +G G +PG + G
Sbjct: 166 GYDEKS----TGGISV-PGPMGPSGP----RGLPGPPGAPGPQGFQGPPG-EPGEPGASG 215
Query: 122 LRAAKGDSG 130
+G G
Sbjct: 216 PMGPRGPPG 224
Score = 32.0 bits (71), Expect = 0.22
Identities = 39/128 (30%), Positives = 45/128 (35%), Gaps = 8/128 (6%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG +G +GP G A P E GP P+G G D + G
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
GA G G P PA AGP + PG + RG G PG G
Sbjct: 828 EPGDAGA--KGDAG-PPGPAGPAGPPGPIGNV----GAPGAKGARGSAG-PPGATGFPGA 879
Query: 123 RAAKGDSG 130
G G
Sbjct: 880 AGRVGPPG 887
Score = 31.2 bits (69), Expect = 0.37
Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 13/132 (9%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G PAG RG+ G PG P LP G GP G G+ D G
Sbjct: 457 QGPPGPAGEEGKRGARGEPG-----PTGLPGPPGERGGP----GSRGFPGADGVAGPKGP 507
Query: 64 CFLTGAFWTGVLGTSPAPALGAGPCAL-GAR-LPRCPSRPGLEALRGLRG--FQPGRQRS 119
G+ SP A G L GA+ L P PG + G G Q GR
Sbjct: 508 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 567
Query: 120 RGLRAAKGDSGV 131
G A+G +GV
Sbjct: 568 PGPPGARGQAGV 579
Score = 30.8 bits (68), Expect = 0.49
Identities = 38/121 (31%), Positives = 42/121 (34%), Gaps = 24/121 (19%)
Query: 1 MEPEGARAPAG--------GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGW 51
M P G P G G PGR G GPPG + LP GL G G+
Sbjct: 217 MGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP--QGARGLPGTAGLP----GMKGHRGF 270
Query: 52 SEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLR 110
S D AG G G +P P +G R LP RPG G R
Sbjct: 271 SGLDGAKGDAGP--------AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 111 G 111
G
Sbjct: 323 G 323
Score = 30.8 bits (68), Expect = 0.49
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G P G RG AG G + A P E G P G G + D E G
Sbjct: 562 DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 621
Query: 64 CFLTG-AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
G A G G + +P P G P +PG + + G G PG +RG
Sbjct: 622 PGPAGPAGERGEQGPAGSPGFQGLPGPAGP--PGEAGKPGEQGVPGDLG-APGPSGARGE 678
Query: 123 RAAKGDSGV 131
R G+ GV
Sbjct: 679 RGFPGERGV 687
Score = 28.5 bits (62), Expect = 2.4
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSED 54
P GA PAG GSAG PG L GL GP+ P G G + D
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGK--------DGLNGLP-GPIGPPGPRGRTGD 1173
Score = 27.7 bits (60), Expect = 4.1
Identities = 37/131 (28%), Positives = 46/131 (35%), Gaps = 17/131 (12%)
Query: 3 PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDV 59
P G PAG G+ GP GA P+ + G+ G G G E
Sbjct: 924 PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 983
Query: 60 TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
G +G G G P L AGP P G E G G PGR S
Sbjct: 984 KQGPSGASGE--RGPPGPMGPPGL-AGP----------PGESGREGAPGAEG-SPGRDGS 1029
Query: 120 RGLRAAKGDSG 130
G + +G++G
Sbjct: 1030 PGAKGDRGETG 1040
Score = 26.9 bits (58), Expect = 7.0
Identities = 35/132 (26%), Positives = 42/132 (31%), Gaps = 31/132 (23%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G P G RG AGP G P G G + + + G
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQG---------------------PRGDKGETGEQGDRGIKG 1109
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQPGRQR 118
+G G G +P A G PR P PG + L GL PG
Sbjct: 1110 HRGFSGL--QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGL----PGPIG 1163
Query: 119 SRGLRAAKGDSG 130
G R GD+G
Sbjct: 1164 PPGPRGRTGDAG 1175
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 42.7 bits (99), Expect = 1e-04
Identities = 45/143 (31%), Positives = 55/143 (38%), Gaps = 20/143 (13%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-HGPLRPSGGGGWSEDDAEDVTA 61
P GAR P GG G +GPPG ++ + P GL+ GP G G +
Sbjct: 803 PPGARGPPGGQGPPGLSGPPG--IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLP 860
Query: 62 GRCFLTGA-------FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
G GA G +G P P +GA PGL +G GF P
Sbjct: 861 GLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGA--------PGLPGEKGDHGF-P 911
Query: 115 GRQRSRGLRAAKGDSG-VGIRRK 136
G RG KGD G VG+ K
Sbjct: 912 GSSGPRGDPGLKGDKGDVGLPGK 934
Score = 37.7 bits (86), Expect = 0.004
Identities = 41/131 (31%), Positives = 48/131 (36%), Gaps = 38/131 (29%)
Query: 4 EGARAPAGGG--PG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
+G R P GG PG RG GPPG PP +GP P G G +
Sbjct: 582 KGERGPPGGVGFPGSRGDTGPPG---------PP----GYGPAGPIGDKGQA-------- 620
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
G G +P L GP ++ P PG E L G GF PG Q R
Sbjct: 621 ------------GFPGGPGSPGL-PGPKGEPGKIVPLPGPPGAEGLPGSPGF-PGPQGDR 666
Query: 121 GLRAAKGDSGV 131
G G G+
Sbjct: 667 GFPGTPGRPGL 677
Score = 33.9 bits (76), Expect = 0.058
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 3 PEGARAPAG-----GGPG----RGSAGPPGAA-LREPEALPPLGGLEHGPLRPSGGGGWS 52
PEG + P G G PG +G+ GPPGA+ LP + G + GP P G G +
Sbjct: 68 PEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPG-QDGPPGPPGIPGCN 126
Query: 53 EDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF 112
E G L G + G G P + P + +P L+G RGF
Sbjct: 127 GTKGERGPLGPPGLPG--FAGNPGPPGLPGMKGDPGEILGHVPGM-------LLKGERGF 177
Query: 113 Q--PGRQRSRGLRAAKGDSG 130
PG GL +G G
Sbjct: 178 PGIPGTPGPPGLPGLQGPVG 197
Score = 32.3 bits (72), Expect = 0.17
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 10 AGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
A G PG G GPPG P+ + L G + GP G G++ G+ G
Sbjct: 683 AVGQPGIGFPGPPG-----PKGVDGLPG-DMGPPGTPGRPGFNGLPGNPGVQGQKGEPGV 736
Query: 70 FWTGVLGTSPAPALGAGPCALGA-RLPRCPSR------PGLEALRGLRGFQPGRQRSRGL 122
G+ G P + P G+ +P P PGL+ +RG +PG G
Sbjct: 737 GLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRG----EPGPPGLPGS 792
Query: 123 RAAKGDSGVG 132
+ G G+G
Sbjct: 793 VGSPGVPGIG 802
Score = 32.3 bits (72), Expect = 0.17
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 32/133 (24%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G P G RG G PG ++ +A P G P G
Sbjct: 956 KGQIGPIGEKGSRGDPGTPGVPGKDGQAGQP------GQPGPKGD--------------- 994
Query: 64 CFLTGAFWTGVLGTSPAPAL-GAGPCALGARLPRCPSRPGLEALRGLRGFQ--PGRQRSR 120
G+ GT AP L G G LP P G+ + G +G PG + ++
Sbjct: 995 --------PGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAK 1046
Query: 121 GLRAAKGDSGVGI 133
G + G G+GI
Sbjct: 1047 GEKGQAGPPGIGI 1059
Score = 30.8 bits (68), Expect = 0.49
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 24/145 (16%)
Query: 5 GARAPAGGGPGRGSAGPPG----------AALREPEALPPLGGLE----HGPLRPSGGGG 50
GA P G RG GPPG + P A P GG GP G G
Sbjct: 770 GAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKG 829
Query: 51 WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
+ D+ + G+ G S P L P GA P P PG + G+
Sbjct: 830 FPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGL---PGQQGA--PGIPGFPGSKGEMGVM 884
Query: 111 GF-----QPGRQRSRGLRAAKGDSG 130
G PG + GL KGD G
Sbjct: 885 GTPGQPGSPGPVGAPGLPGEKGDHG 909
Score = 30.0 bits (66), Expect = 0.83
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 4 EGARAPAG--GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPS-----GGGGWSEDD 55
+G+R G G PG+ G AG PG P+ P + G P P GG G
Sbjct: 965 KGSRGDPGTPGVPGKDGQAGQPGQP--GPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTP 1022
Query: 56 AEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-- 113
E G + G +P L A G + P G+ LRG +G Q
Sbjct: 1023 GEKGVPG-----------IPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGI 1071
Query: 114 PGRQRSRGLRAAKGDSGV 131
G S G + KG G+
Sbjct: 1072 AGFPGSPGEKGEKGSIGI 1089
Score = 28.1 bits (61), Expect = 3.2
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 30/134 (22%)
Query: 12 GGPGRGSAGPPGA----ALREPEALPPLGGLE-----------HGPLRPSGGGGWSEDDA 56
G PGRG G PGA + P L G GP P G G
Sbjct: 1169 GLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPG 1228
Query: 57 EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
+ G G P L P +G P PG++ ++G +G PG
Sbjct: 1229 HATEGPK---------GDRGPQGQPGLPGLPGPMGP-----PGLPGIDGVKGDKG-NPGW 1273
Query: 117 QRSRGLRAAKGDSG 130
+ G+ KGD G
Sbjct: 1274 PGAPGVPGPKGDPG 1287
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/57 (47%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 3 PEGARAPAGGGPGRGSAG------PPGAALRE---PEALPPLGGLEHGPLRPSGGGG 50
P G PAGGG G G AG PPGA R P P GG GP +P GGGG
Sbjct: 10 PPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGG 66
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.8 bits (94), Expect = 5e-04
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 33/147 (22%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
M P G PAG +G G PG EP P+ GP P G G DD E
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEP-GEPGVSGPM-----GPRGPPGPPGKPGDDGEAGK 259
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
G+ G P P GAR P PGL ++G RG+
Sbjct: 260 PGKAGERG---------PPGPQ--------GAR--GFPGTPGLPGVKGHRGYP------- 293
Query: 121 GLRAAKGDSGV-GIRRKGSTRREGWTP 146
GL AKG++G G++ + + E +P
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGENGSP 320
Score = 39.3 bits (90), Expect = 0.001
Identities = 48/149 (32%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 3 PEGARAPAG-GGP--GRGSAGPPGAA----LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
P G P+G GP RG +GPPG A L+ P A PP E G PSG G
Sbjct: 916 PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQ 974
Query: 56 AEDVTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCP----------SRP 101
G L G + G+ G S P P A G R P P P
Sbjct: 975 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034
Query: 102 GLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G E G G PGR + G++ +G++G
Sbjct: 1035 GREGSPGADG-PPGRDGAAGVKGDRGETG 1062
Score = 37.4 bits (85), Expect = 0.005
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 3 PEGARAPAG--GGPG-------------RGSAGPPGAALREPEALPPLGGLEHGPLRPSG 47
P GA P G G PG RG GPPG + EA P E GP P G
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 273
Query: 48 GGGWSEDDAEDVTAGRCFLTG-------AFWTGVLGTSPAPALGAGPCALGAR-LPRCPS 99
G+ G G A GV G S +P P +G R LP
Sbjct: 274 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 333
Query: 100 RPGLEALRGLRG--FQPG 115
R G G RG QPG
Sbjct: 334 RTGPAGAAGARGNDGQPG 351
Score = 37.4 bits (85), Expect = 0.005
Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
G PAG RG+ G PG A PP GP+ P+GG G+ AG
Sbjct: 333 GRTGPAGAAGARGNDGQPG------PAGPP------GPVGPAGGPGFPGAPGAKGEAGPT 380
Query: 65 FLTGAFWTGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLEALRGLRGF----- 112
G G G P P GA +P G + G GF
Sbjct: 381 GARGP--EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438
Query: 113 QPGRQRSRGLRAAKGDSG 130
PG Q + G KG +G
Sbjct: 439 PPGPQGATGPLGPKGQTG 456
Score = 37.0 bits (84), Expect = 0.007
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G + P G +G G PG R+ E P GP P G G + A + G
Sbjct: 127 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG 186
Query: 63 RCFLTGAFWTGVL---------GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-- 111
G GV+ P PA GP P P PG+ G RG
Sbjct: 187 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN-PGEPGEPGVSGPMGPRGPP 245
Query: 112 FQPGRQRSRGLRAAKGDSG 130
PG+ G G +G
Sbjct: 246 GPPGKPGDDGEAGKPGKAG 264
Score = 35.0 bits (79), Expect = 0.026
Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 25/150 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG +G GPPG A P E GP P+G G D + G
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 849
Query: 63 RCFLTG----AFWTGVLGTSPAPALGAGPCAL----GARLPRCPSRPGLEALRGLRG--- 111
G A G G S AP GP + GAR + P PG G G
Sbjct: 850 EQGEAGQKGDAGAPGPQGPSGAPG-PQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVG 906
Query: 112 -----------FQPGRQRSRGLRAAKGDSG 130
PG G + A+GDSG
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 936
Score = 34.3 bits (77), Expect = 0.044
Identities = 44/159 (27%), Positives = 57/159 (35%), Gaps = 38/159 (23%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-----------------AALREP-----EALPPLGGL-- 38
P+G P+G G GPPG A EP + LP GL
Sbjct: 571 PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 630
Query: 39 ------EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGA 92
E G P G G + + E G + + G+ G P G P G
Sbjct: 631 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKPGDQG- 684
Query: 93 RLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
+P PGL RG RGF PG + S G + +G G+
Sbjct: 685 -VPGEAGAPGLVGPRGERGF-PGERGSPGAQGLQGPRGL 721
Score = 33.9 bits (76), Expect = 0.058
Identities = 39/133 (29%), Positives = 45/133 (33%), Gaps = 33/133 (24%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+GA PAG RG+ G PG GP+ P G G G
Sbjct: 478 PQGAPGPAGEEGKRGARGEPGGV---------------GPIGPPGERG---------APG 513
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
G G+ G AP GP L P P PGL RGL G +PG
Sbjct: 514 NRGFPGQ--DGLAGPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG-RPGDA 569
Query: 118 RSRGLRAAKGDSG 130
+G G G
Sbjct: 570 GPQGKVGPSGAPG 582
Score = 33.5 bits (75), Expect = 0.075
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 38/143 (26%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P GAR P G RG G PG+ GP SG G +AG
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSP---------------GPAGASGNPGTDGIPGAKGSAG 423
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ----- 113
G+ G P P GA P P PG+ +G +G +
Sbjct: 424 A--------PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 475
Query: 114 ------PGRQRSRGLRAAKGDSG 130
PG G R A+G+ G
Sbjct: 476 AGPQGAPGPAGEEGKRGARGEPG 498
Score = 33.5 bits (75), Expect = 0.075
Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
PEGA GG G GPPG A E E GP P+G G E G
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEK------GEVGPPGPAGSAGARGAPGERGETG 828
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQ 117
P PA AGP P +PG + +G G + PG Q
Sbjct: 829 ---------------PPGPAGFAGP-------PGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Query: 118 RSRGLRAAKGDSGV 131
G +G +GV
Sbjct: 867 GPSGAPGPQGPTGV 880
Score = 29.3 bits (64), Expect = 1.4
Identities = 46/160 (28%), Positives = 54/160 (33%), Gaps = 42/160 (26%)
Query: 3 PEGARAPAG-----GGPG----------------RGSAGPPGAA----LREPEALP-PLG 36
PEGA+ P G G PG +GSAG PG A P P P G
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444
Query: 37 GLEHGPLRPSGG------GGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCAL 90
GPL P G G+ + G GA G G P +
Sbjct: 445 AT--GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA--PGPAGEEGKRGARGEPGGV 500
Query: 91 GARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G P PG G RGF PG+ G + A G+ G
Sbjct: 501 GPIGP-----PGERGAPGNRGF-PGQDGLAGPKGAPGERG 534
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.8 bits (94), Expect = 5e-04
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 33/147 (22%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
M P G PAG +G G PG EP P+ GP P G G DD E
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEP-GEPGVSGPM-----GPRGPPGPPGKPGDDGEAGK 190
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
G+ G P P GAR P PGL ++G RG+
Sbjct: 191 PGKAGERG---------PPGPQ--------GAR--GFPGTPGLPGVKGHRGYP------- 224
Query: 121 GLRAAKGDSGV-GIRRKGSTRREGWTP 146
GL AKG++G G++ + + E +P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGSP 251
Score = 39.3 bits (90), Expect = 0.001
Identities = 48/149 (32%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 3 PEGARAPAG-GGP--GRGSAGPPGAA----LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
P G P+G GP RG +GPPG A L+ P A PP E G PSG G
Sbjct: 847 PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQ 905
Query: 56 AEDVTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCP----------SRP 101
G L G + G+ G S P P A G R P P P
Sbjct: 906 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965
Query: 102 GLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G E G G PGR + G++ +G++G
Sbjct: 966 GREGSPGADG-PPGRDGAAGVKGDRGETG 993
Score = 37.4 bits (85), Expect = 0.005
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 3 PEGARAPAG--GGPG-------------RGSAGPPGAALREPEALPPLGGLEHGPLRPSG 47
P GA P G G PG RG GPPG + EA P E GP P G
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 204
Query: 48 GGGWSEDDAEDVTAGRCFLTG-------AFWTGVLGTSPAPALGAGPCALGAR-LPRCPS 99
G+ G G A GV G S +P P +G R LP
Sbjct: 205 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 264
Query: 100 RPGLEALRGLRG--FQPG 115
R G G RG QPG
Sbjct: 265 RTGPAGAAGARGNDGQPG 282
Score = 37.4 bits (85), Expect = 0.005
Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
G PAG RG+ G PG A PP GP+ P+GG G+ AG
Sbjct: 264 GRTGPAGAAGARGNDGQPG------PAGPP------GPVGPAGGPGFPGAPGAKGEAGPT 311
Query: 65 FLTGAFWTGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLEALRGLRGF----- 112
G G G P P GA +P G + G GF
Sbjct: 312 GARGP--EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369
Query: 113 QPGRQRSRGLRAAKGDSG 130
PG Q + G KG +G
Sbjct: 370 PPGPQGATGPLGPKGQTG 387
Score = 37.0 bits (84), Expect = 0.007
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G + P G +G G PG R+ E P GP P G G + A + G
Sbjct: 58 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG 117
Query: 63 RCFLTGAFWTGVL---------GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-- 111
G GV+ P PA GP P P PG+ G RG
Sbjct: 118 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN-PGEPGEPGVSGPMGPRGPP 176
Query: 112 FQPGRQRSRGLRAAKGDSG 130
PG+ G G +G
Sbjct: 177 GPPGKPGDDGEAGKPGKAG 195
Score = 35.0 bits (79), Expect = 0.026
Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 25/150 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG +G GPPG A P E GP P+G G D + G
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 780
Query: 63 RCFLTG----AFWTGVLGTSPAPALGAGPCAL----GARLPRCPSRPGLEALRGLRG--- 111
G A G G S AP GP + GAR + P PG G G
Sbjct: 781 EQGEAGQKGDAGAPGPQGPSGAPG-PQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVG 837
Query: 112 -----------FQPGRQRSRGLRAAKGDSG 130
PG G + A+GDSG
Sbjct: 838 PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 867
Score = 34.3 bits (77), Expect = 0.044
Identities = 44/159 (27%), Positives = 57/159 (35%), Gaps = 38/159 (23%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-----------------AALREP-----EALPPLGGL-- 38
P+G P+G G GPPG A EP + LP GL
Sbjct: 502 PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 561
Query: 39 ------EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGA 92
E G P G G + + E G + + G+ G P G P G
Sbjct: 562 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKPGDQG- 615
Query: 93 RLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
+P PGL RG RGF PG + S G + +G G+
Sbjct: 616 -VPGEAGAPGLVGPRGERGF-PGERGSPGAQGLQGPRGL 652
Score = 33.9 bits (76), Expect = 0.058
Identities = 39/133 (29%), Positives = 45/133 (33%), Gaps = 33/133 (24%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+GA PAG RG+ G PG GP+ P G G G
Sbjct: 409 PQGAPGPAGEEGKRGARGEPGGV---------------GPIGPPGERG---------APG 444
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
G G+ G AP GP L P P PGL RGL G +PG
Sbjct: 445 NRGFPGQ--DGLAGPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG-RPGDA 500
Query: 118 RSRGLRAAKGDSG 130
+G G G
Sbjct: 501 GPQGKVGPSGAPG 513
Score = 33.5 bits (75), Expect = 0.075
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 38/143 (26%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P GAR P G RG G PG+ GP SG G +AG
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSP---------------GPAGASGNPGTDGIPGAKGSAG 354
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ----- 113
G+ G P P GA P P PG+ +G +G +
Sbjct: 355 A--------PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 406
Query: 114 ------PGRQRSRGLRAAKGDSG 130
PG G R A+G+ G
Sbjct: 407 AGPQGAPGPAGEEGKRGARGEPG 429
Score = 33.5 bits (75), Expect = 0.075
Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
PEGA GG G GPPG A E E GP P+G G E G
Sbjct: 706 PEGAPGKDGGRGLTGPIGPPGPAGANGEK------GEVGPPGPAGSAGARGAPGERGETG 759
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQ 117
P PA AGP P +PG + +G G + PG Q
Sbjct: 760 ---------------PPGPAGFAGP-------PGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Query: 118 RSRGLRAAKGDSGV 131
G +G +GV
Sbjct: 798 GPSGAPGPQGPTGV 811
Score = 29.3 bits (64), Expect = 1.4
Identities = 46/160 (28%), Positives = 54/160 (33%), Gaps = 42/160 (26%)
Query: 3 PEGARAPAG-----GGPG----------------RGSAGPPGAA----LREPEALP-PLG 36
PEGA+ P G G PG +GSAG PG A P P P G
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 375
Query: 37 GLEHGPLRPSGG------GGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCAL 90
GPL P G G+ + G GA G G P +
Sbjct: 376 AT--GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA--PGPAGEEGKRGARGEPGGV 431
Query: 91 GARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G P PG G RGF PG+ G + A G+ G
Sbjct: 432 GPIGP-----PGERGAPGNRGF-PGQDGLAGPKGAPGERG 465
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 40.0 bits (92), Expect = 8e-04
Identities = 43/136 (31%), Positives = 49/136 (36%), Gaps = 24/136 (17%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G R P G G G GPPGA P L GP P G G + E GR
Sbjct: 2170 QGPRGPPGPVGGHGDPGPPGA--------PGLA----GPAGPQGPSGLKGEPGETGPPGR 2217
Query: 64 CFL--TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
TGA +G++G +P L G P P R G G RG P
Sbjct: 2218 GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGK--PGAPGRDGASGKDGDRG-SP 2274
Query: 115 GRQRSRGLRAAKGDSG 130
G S GL G G
Sbjct: 2275 GVPGSPGLPGPVGPKG 2290
Score = 35.8 bits (81), Expect = 0.015
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 35/132 (26%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G G RG AGPPG E +P GPL P G G
Sbjct: 2411 PRGEMGQPGPSGERGLAGPPGR-----EGIP-------GPLGPPG------------PPG 2446
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGAR----LPRCPSRPGLEALRGLRGFQPGRQR 118
GA +G+ G P +G P G R + RPG E RGL G PG
Sbjct: 2447 SVGPPGA--SGLKGDKGDPGVGL-PGPRGERGEPGIRGEDGRPGQEGPRGLTG-PPG--- 2499
Query: 119 SRGLRAAKGDSG 130
SRG R KGD G
Sbjct: 2500 SRGERGEKGDVG 2511
Score = 35.4 bits (80), Expect = 0.020
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G R P G RG G PG A++ + E GP P GG + G
Sbjct: 1375 PPGPRGPLGDPGPRGPPGLPGTAMKGDKG----DRGERGPPGPGEGG---------IAPG 1421
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
L G L SP P GP G + + S G L G G PG Q RG
Sbjct: 1422 EPGLPG------LPGSPGPQGPVGP--PGKKGEKGDSEDGAPGLPGQPG-SPGEQGPRGP 1472
Query: 123 RAAKGDSG 130
A G G
Sbjct: 1473 PGAIGPKG 1480
Score = 34.7 bits (78), Expect = 0.034
Identities = 42/151 (27%), Positives = 51/151 (33%), Gaps = 26/151 (17%)
Query: 5 GARAPAGGGPGRGSAGPPG----AALREPEALPPLGGLEHGPLRP--------SGGGGWS 52
GA P+G G AG PG LR + LP G P +P +G G
Sbjct: 1788 GAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEP 1847
Query: 53 EDDAEDVTAGRCFLTGAFW-------------TGVLGTSPAPALGAGPCALGARLPRCPS 99
D ED G +GA G+LG P L G P P
Sbjct: 1848 GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPG 1907
Query: 100 RPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G + RG G G Q G R +G+ G
Sbjct: 1908 GTGPKGDRGETG-SKGEQGLPGERGLRGEPG 1937
Score = 33.9 bits (76), Expect = 0.058
Identities = 39/149 (26%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVT 60
P G + P+G G GPPG L P L G G + P G G E
Sbjct: 2196 PAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGK 2255
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRP---------GLEALRGLRG 111
G GA +G G +P + P G P+ P GL +G +G
Sbjct: 2256 PGAPGRDGA--SGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKG 2313
Query: 112 F----------QPGRQRSRGLRAAKGDSG 130
+PG + RGL +G+ G
Sbjct: 2314 APGGLAGDLVGEPGAKGDRGLPGPRGEKG 2342
Score = 33.5 bits (75), Expect = 0.075
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--------EHGPLRPSGGGGWSED 54
P G+ P G +G G PG L P G+ + GP +G G +
Sbjct: 2444 PPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGE 2503
Query: 55 DAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG--F 112
E G L G + P GA +G R PR GL+ +G RG
Sbjct: 2504 RGEKGDVGSAGLKGDKGDSAVILGPPGPRGA-KGDMGERGPR-----GLDGDKGPRGDNG 2557
Query: 113 QPGRQRSRGLRAAKGDSGV-GIR 134
PG + S+G KG +G+ G+R
Sbjct: 2558 DPGDKGSKGEPGDKGSAGLPGLR 2580
Score = 33.1 bits (74), Expect = 0.098
Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 4 EGARAPAGGGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
+G A G PG RG+ G G R P L + GP +G G E G
Sbjct: 2519 KGDSAVILGPPGPRGAKGDMGE--RGPRGLDG----DKGPRGDNGDPGDKGSKGEPGDKG 2572
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
L G G+LG P A +P P PG + + G+RG + G G
Sbjct: 2573 SAGLPGL--RGLLGPQGQPG--------AAGIPGDPGSPGKDGVPGIRG-EKGDVGFMGP 2621
Query: 123 RAAKGDSGV 131
R KG+ GV
Sbjct: 2622 RGLKGERGV 2630
Score = 32.0 bits (71), Expect = 0.22
Identities = 42/140 (30%), Positives = 48/140 (34%), Gaps = 32/140 (22%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGG------GWSEDDA 56
P+G + G RG GPPG LP G GP P G G+ D
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPG-----DPGLPGRTGAP-GPQGPPGSATAKGERGFPGADG 1305
Query: 57 EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
+ GR G GT AP L P G R PG RG +G +PG
Sbjct: 1306 RPGSPGR--------AGNPGTPGAPGLKGSPGLPGPR-----GDPGERGPRGPKG-EPGA 1351
Query: 117 Q------RSRGLRAAKGDSG 130
GL KGD G
Sbjct: 1352 PGQVIGGEGPGLPGRKGDPG 1371
Score = 30.0 bits (66), Expect = 0.83
Identities = 40/137 (29%), Positives = 48/137 (35%), Gaps = 13/137 (9%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRP--------SGGGGWSEDDA 56
G R G G GPPG AL E P GL P +P +GG G +
Sbjct: 2000 GERGLKGDRGDPGPQGPPGLALGE-RGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPG 2058
Query: 57 EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ--P 114
E G G G G P P G ++ PGL +G G +
Sbjct: 2059 ERGERGEKGERGE--QGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAK 2116
Query: 115 GRQRSRGLRAAKGDSGV 131
G S G + KGD GV
Sbjct: 2117 GEPGSNGDQGPKGDRGV 2133
Score = 28.9 bits (63), Expect = 1.9
Identities = 47/152 (30%), Positives = 52/152 (34%), Gaps = 28/152 (18%)
Query: 3 PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGW 51
P GA P G G PG +G GPPG A LP + G GP P G G
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPA--GSRGLPGVAGRPGAKGPEGPPGPTGR 1529
Query: 52 SEDDAEDVTAGRCFLTGAFWTGVLG----TSPAPALGA-------GPCALGARLPRCPSR 100
+ E G + G G G PA GA GP G LP P
Sbjct: 1530 QGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGP--PGLVLPGDPGP 1587
Query: 101 PGLEALRGLRGF--QPGRQRSRGLRAAKGDSG 130
G RG G + G G KGD G
Sbjct: 1588 KGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPG 1619
Score = 28.5 bits (62), Expect = 2.4
Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G P G G GPPG + E P L G E GP G G + + G
Sbjct: 2072 QGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSG-EQGPPGLKGAKGEPGSNGDQGPKGD 2130
Query: 64 CFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP-SRPGLEALRGLRG-----FQPGRQ 117
+ G G G P G R P +PGL+ RG G PG
Sbjct: 2131 RGVPGI--KGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPP 2188
Query: 118 RSRGLRAAKGDSG 130
+ GL G G
Sbjct: 2189 GAPGLAGPAGPQG 2201
Score = 27.7 bits (60), Expect = 4.1
Identities = 44/152 (28%), Positives = 51/152 (33%), Gaps = 28/152 (18%)
Query: 3 PEGARAPAGGGPGRGSAGPPG-AALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
PEG P G +G G PG A+ P P G E G + P+G G + E
Sbjct: 1520 PEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKG--EKGDVGPAGPRGATGVQGERGPP 1577
Query: 62 GRCF-----------------LTGAFWTGVLGTSPAPALGAGPCALGARLPRCP-SRPGL 103
G LTG G G S P P G P P R G
Sbjct: 1578 GLVLPGDPGPKGDPGDRGPIGLTGR--AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGE 1635
Query: 104 EALRGLRGFQ-----PGRQRSRGLRAAKGDSG 130
+G G PG+ RGLR A G G
Sbjct: 1636 VGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG 1667
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.7 bits (91), Expect = 0.001
Identities = 43/137 (31%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 3 PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
P+G + PAG G PG RG AGPPG A + P E G + P G G+
Sbjct: 110 PQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPG 169
Query: 54 DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ 113
G G G+ G AP + P A G PG RGL G +
Sbjct: 170 TPGLPGFKGIRGHNGL--DGLKGQPGAPGVKGEPGAPGEN-----GTPGQTGARGLPG-E 221
Query: 114 PGRQRSRGLRAAKGDSG 130
GR + G A+G G
Sbjct: 222 RGRVGAPGPAGARGSDG 238
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG RG GP G + P G + GP PSG G D E G
Sbjct: 965 PHGPVGPAGKHGNRGETGPSGP-------VGPAGAV--GPRGPSGPQGIRGDKGEPGEKG 1015
Query: 63 RCFLTGAFWTGVLGTSPAPALGA------GPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
L G G G P + P ++G PR P+ P A + R PG
Sbjct: 1016 PRGLPGL--KGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGT 1073
Query: 117 QRSRGLRAAKGDSG 130
G+R +G G
Sbjct: 1074 VGPAGIRGPQGHQG 1087
Score = 39.3 bits (90), Expect = 0.001
Identities = 45/132 (34%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 5 GARAPAG--GGPGR----GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAED 58
G PAG G PG G G PG A E PP GP P G G S D
Sbjct: 559 GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD 618
Query: 59 VTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQR 118
G + GA G G S L A G +P G LRG G PGR
Sbjct: 619 GNKGEPGVVGA--VGTAGPSGPSGLPGERGAAG--IPGGKGEKGEPGLRGEIG-NPGRDG 673
Query: 119 SRGLRAAKGDSG 130
+RG A G G
Sbjct: 674 ARGAPGAVGAPG 685
Score = 38.9 bits (89), Expect = 0.002
Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 29/129 (22%)
Query: 7 RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
+ PAG RG GPPG PP E GP P G G G L
Sbjct: 32 KGPAGDRGPRGERGPPG---------PPGRDGEDGPTGPPGPPG---------PPGPPGL 73
Query: 67 TGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQRSRG 121
G F G +G GP +G PR P PG G +GFQ PG G
Sbjct: 74 GGNFAAQYDG----KGVGLGPGPMGLMGPRGP--PGAAGAPGPQGFQGPAGEPGEPGQTG 127
Query: 122 LRAAKGDSG 130
A+G +G
Sbjct: 128 PAGARGPAG 136
Score = 38.1 bits (87), Expect = 0.003
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL----EHGPLRPSGGGGWSEDDAEDV 59
+G+ P G GSAGPPG P A P G + GP P+G G
Sbjct: 237 DGSVGPVGPAGPIGSAGPPGF----PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSG 292
Query: 60 TAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQ 117
G GA TG G + P + P G R +P G RGL G +PG
Sbjct: 293 PVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG-EPGPA 351
Query: 118 RSRGLRAAKGDSG 130
S+G KG+ G
Sbjct: 352 GSKGESGNKGEPG 364
Score = 37.4 bits (85), Expect = 0.005
Identities = 45/140 (32%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 3 PEGARAPAG--GGPG----RGSAGP------PGAALREPEALPPLGGLEHGPLRPSGGGG 50
P GA PAG G PG RG GP PGAA R P GP P+G G
Sbjct: 758 PVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEG 817
Query: 51 WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
+ GR GA P+ AG A P P GL G+
Sbjct: 818 LRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGT----AGPPGTPGPQGLLGAPGIL 873
Query: 111 GFQPGRQRSRGLRAAKGDSG 130
G PG + RGL G G
Sbjct: 874 GL-PGSRGERGLPGVAGAVG 892
Score = 37.4 bits (85), Expect = 0.005
Identities = 46/157 (29%), Positives = 60/157 (38%), Gaps = 58/157 (36%)
Query: 3 PEGARAPAG--------GGPGR-------GSAGPPG--------AALREPEALPPLGGL- 38
P GAR P G G PG G+ GPPG P + P+G
Sbjct: 902 PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAG 961
Query: 39 ---EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLG-TSPAPALGAGPCALGARL 94
HGP+ P+G G + TG G PA A+G
Sbjct: 962 APGPHGPVGPAGKHGNRGE-----------------TGPSGPVGPAGAVG---------- 994
Query: 95 PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
PR PS P + +RG +G +PG + RGL KG +G+
Sbjct: 995 PRGPSGP--QGIRGDKG-EPGEKGPRGLPGLKGHNGL 1028
Score = 35.4 bits (80), Expect = 0.020
Identities = 51/161 (31%), Positives = 61/161 (37%), Gaps = 40/161 (24%)
Query: 5 GARAPAGGGPGRGSAGPPG--AALREPEALPPLGGLEHGPLRPSG-----------GGGW 51
GA P G RG +GPPG EP + +G GP PSG GG
Sbjct: 598 GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA--GPSGPSGLPGERGAAGIPGGKG 655
Query: 52 SEDD----AEDVTAGRCFLTGAFWTGVLGT-SPAPALG-------AGPCALGARLPR-CP 98
+ + E GR GA G +G PA A G AGP G PR P
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGA--PGAVGAPGPAGATGDRGEAGAAGPA--GPAGPRGSP 711
Query: 99 SRPGLEALRGLRGF--------QPGRQRSRGLRAAKGDSGV 131
G G GF QPG + RG + KG++GV
Sbjct: 712 GERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGV 752
Score = 34.3 bits (77), Expect = 0.044
Identities = 43/135 (31%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAED 58
EG R P G G GPPG LR L G + GP G G + +
Sbjct: 378 EGKRGPNGEAGSAGPPGPPG--LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPN 435
Query: 59 VTAGRCFLTGAFWTGVLGTSP---APALGAGPCALGARLPRCPSRPGLEALRGLRGFQPG 115
AGR G L SP PA GP LP RPG G RG +PG
Sbjct: 436 GDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVG----LPGIDGRPGPIGPAGARG-EPG 490
Query: 116 RQRSRGLRAAKGDSG 130
G + GD G
Sbjct: 491 NIGFPGPKGPTGDPG 505
Score = 34.3 bits (77), Expect = 0.044
Identities = 43/136 (31%), Positives = 46/136 (33%), Gaps = 16/136 (11%)
Query: 5 GARAPAG-----GGPGR----GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
GA PAG G PG G AGP G A A P E G P G G
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPT 756
Query: 56 AEDVTAGRCFLTGAFW-TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
AG G G G P + P A G P PG + G G P
Sbjct: 757 GPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGP-----PGPSGISGPPG-PP 810
Query: 115 GRQRSRGLRAAKGDSG 130
G GLR +GD G
Sbjct: 811 GPAGKEGLRGPRGDQG 826
Score = 34.3 bits (77), Expect = 0.044
Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 29/143 (20%)
Query: 3 PEGARAPAG--GGPG----RGSAGPPGAALREPEALPPLGGL-EHGPLRPSGGGGWSEDD 55
P G PAG G PG RG+ GP G E + P G + GP P+G G +
Sbjct: 722 PNGFAGPAGAAGQPGAKGERGAKGPKG----ENGVVGPTGPVGAAGPAGPNGPPGPAGSR 777
Query: 56 AEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-- 113
+ G GA G G P P+ +GP P P G E LRG RG Q
Sbjct: 778 GDGGPPGMTGFPGA--AGRTG-PPGPSGISGP-------PGPPGPAGKEGLRGPRGDQGP 827
Query: 114 ------PGRQRSRGLRAAKGDSG 130
G G KG SG
Sbjct: 828 VGRTGEVGAVGPPGFAGEKGPSG 850
Score = 32.7 bits (73), Expect = 0.13
Identities = 43/155 (27%), Positives = 57/155 (36%), Gaps = 27/155 (17%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G P G G+G GPPG P L G PSG G E G
Sbjct: 531 QGPPGPQGVQGGKGEQGPPG-----PPGFQGLPG-------PSGPAGEVGKPGERGLHGE 578
Query: 64 CFLTGAFWTGVLGTSPAPALGAGPCA-LGARLPRCP-------SRPGLEALRGLRGFQ-- 113
L G P + AGP +G+R P P PG+ G G
Sbjct: 579 FGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP 638
Query: 114 ---PGRQRSRGLRAAKGDSG-VGIRRK-GSTRREG 143
PG + + G+ KG+ G G+R + G+ R+G
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDG 673
Score = 29.6 bits (65), Expect = 1.1
Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 26/134 (19%)
Query: 3 PEGARAPAG--GGPG-RGSAGPPGAALREPEAL---PPLGGLEHGPLRPSGGGGWSEDDA 56
P G P G G G RG G PG A + E+ P GP PSG G +
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNG 385
Query: 57 EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
E G G P L P + G LP R G+ G R G
Sbjct: 386 E--------------AGSAGPPGPPGLRGSPGSRG--LPGADGRAGVMGPPGSR----GA 425
Query: 117 QRSRGLRAAKGDSG 130
G+R GD+G
Sbjct: 426 SGPAGVRGPNGDAG 439
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G R P G +G AGP G EP P+G + G P G G +D E G
Sbjct: 217 PVGPRGPQGLQGQQGGAGPTGPP-GEPGDPGPMGPI--GSRGPEGPPGKPGEDGEPGRNG 273
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSRG 121
G +G + +P GAR P P PGL+ RG +G + G + G
Sbjct: 274 N--------PGEVGFAGSP---------GARGFPGAPGLPGLKGHRGHKGLE-GPKGEVG 315
Query: 122 LRAAKGDSG 130
+KG++G
Sbjct: 316 APGSKGEAG 324
Score = 35.8 bits (81), Expect = 0.015
Identities = 38/133 (28%), Positives = 46/133 (34%), Gaps = 27/133 (20%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-----EHGPLRPSGGGGWSEDDAE 57
P GAR P G RG GPPG P P L G G P+G G S
Sbjct: 391 PTGARGPEGPQGQRGETGPPG-----PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS 445
Query: 58 DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQ 117
G SP P GP + + P P PG + G +G +PG
Sbjct: 446 AGPPG---------------SPGPQGSTGPQGIRGQ-PGDPGVPGFKGEAGPKG-EPGPH 488
Query: 118 RSRGLRAAKGDSG 130
+G G+ G
Sbjct: 489 GIQGPIGPPGEEG 501
Score = 32.7 bits (73), Expect = 0.13
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G G GRG+ GPPGA P G GP P+G G + E G
Sbjct: 886 PHGPNGVPGLKGGRGTQGPPGAT-----GFPGSAG-RVGPPGPAGAPGPAGPLGEPGKEG 939
Query: 63 RCFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRP-GLEALRGLRGFQP 114
L G + G G P P G P P P G RG+ G P
Sbjct: 940 PPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVG-MP 998
Query: 115 GRQRSRGLRAAKGDSG 130
G++ RG+ G +G
Sbjct: 999 GQRGERGMPGLPGPAG 1014
Score = 30.8 bits (68), Expect = 0.49
Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+G + G G GPPG + +P G+ P GG E AE TAG
Sbjct: 739 PDGPKGSPGPSGTPGDTGPPGL-----QGMPGERGIAGTPGPKGDRGGIGEKGAEG-TAG 792
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
G G LG P P AGP P GL G RG PG + G
Sbjct: 793 NDGARGL--PGPLG-PPGP---AGPTGEKGE----PGPRGLVGPPGSRG-NPGSRGENGP 841
Query: 123 RAAKGDSG 130
A G +G
Sbjct: 842 TGAVGFAG 849
Score = 28.9 bits (63), Expect = 1.9
Identities = 42/127 (33%), Positives = 45/127 (35%), Gaps = 44/127 (34%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G R P G +GS G PG EP LP GL P
Sbjct: 542 QGERGPVGSSGPKGSQGDPGRP-GEP-GLPGARGLTGNP--------------------- 578
Query: 64 CFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR 123
GV G P LG LGA P RPG G+RG QPG S GL
Sbjct: 579 ---------GVQG--PEGKLG----PLGA--PGEDGRPGPPGSIGIRG-QPG---SMGLP 617
Query: 124 AAKGDSG 130
KG SG
Sbjct: 618 GPKGSSG 624
Score = 28.5 bits (62), Expect = 2.4
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 3 PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
PEG P G G GPPG+ +R + G + G G S D + A
Sbjct: 583 PEGKLGPLGAPGEDGRPGPPGSIGIRG----------QPGSMGLPGPKGSSGDPGKPGEA 632
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCAL-GARLPRCPSRP-GLEALRGLRGFQPGRQRS 119
G + G P+ GP L G R + P P G + L G G PG
Sbjct: 633 GNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPG-PPGEGGK 691
Query: 120 RGLRAAKGDSG 130
G + GD G
Sbjct: 692 PGDQGVPGDPG 702
Score = 27.3 bits (59), Expect = 5.4
Identities = 51/159 (32%), Positives = 57/159 (35%), Gaps = 36/159 (22%)
Query: 1 MEPEGARAPAG--------GGPGR-------GSAGPPGAALREPEALPPLGGLE-----H 40
M P G+R P G G PGR G AG PGA R P L GL+
Sbjct: 248 MGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA--RGFPGAPGLPGLKGHRGHK 305
Query: 41 GPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPA----LG--AGPCALGAR- 93
G P G G E AG GA G LG P LG P GA
Sbjct: 306 GLEGPKGEVGAPGSKGE---AGPTGPMGAM--GPLGPRGMPGERGRLGPQGAPGQRGAHG 360
Query: 94 LPRCPSRPGLEALRGLRGF--QPGRQRSRGLRAAKGDSG 130
+P P G + G GF PG + G A+G G
Sbjct: 361 MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEG 399
Score = 26.9 bits (58), Expect = 7.0
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 PEGARAPAG--GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
P G P+G G PG G GPPG EA P E GP P G G
Sbjct: 1177 PPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPG 1227
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 39.3 bits (90), Expect = 0.001
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 20 GPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTG------ 73
GPPG P+ LP L G GP P G G G GA T
Sbjct: 823 GPPG-----PDGLPGLPGFP-GPRGPKGDTGLPGFPGLKGEQGEKGEPGAILTEDIPLER 876
Query: 74 VLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
++G P + P +G + P PG + GL G +PGR GL+ KGD GV
Sbjct: 877 LMGKKGEPGMHGAPGPMGPKGP-----PGHKGEFGLPG-RPGRPGLNGLKGTKGDPGV 928
Score = 27.3 bits (59), Expect = 5.4
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
+GAR P G G PG RG GPPG ++ +A PP GP P G G
Sbjct: 681 KGARGPNGSVGEKGDPGNRGLPGPPG---KKGQAGPPGVMGPPGPPGPPGPPG 730
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 39.3 bits (90), Expect = 0.001
Identities = 43/133 (32%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G P G G GPPG + +P GL GP PSG G E T G
Sbjct: 256 PPGVPGPRGEPGAVGPKGPPGV---DGVGVPGAAGLP-GPQGPSGAKG------EPGTRG 305
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
L G G+ G P P GP + L P PG + +GL G PG
Sbjct: 306 PPGLIGPTGYGMPGL-PGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGG-PPGLP 363
Query: 118 RSRGLRAAKGDSG 130
S GL +G G
Sbjct: 364 GSAGLPGRRGPPG 376
Score = 38.5 bits (88), Expect = 0.002
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 23/147 (15%)
Query: 1 MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
M+ +G P G RG GPPG + P L G + GP P G + +
Sbjct: 73 MDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHG-QPGPAGPPGFSRMGKAGPPGLP 131
Query: 61 A-----GRCFLTGAFWTGVLGTS-----PAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
G+ L G G+ G P P GP + P +PG + + G
Sbjct: 132 GKVGPPGQPGLRGE--PGIRGDQGLRGPPGPPGLPGPSGI-----TIPGKPGAQGVPGPP 184
Query: 111 GFQ--PGRQRSRGL---RAAKGDSGVG 132
GFQ PG Q G R KGD+GVG
Sbjct: 185 GFQGEPGPQGEPGPPGDRGLKGDNGVG 211
Score = 35.8 bits (81), Expect = 0.015
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 16 RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVL 75
RG GPPG +P G + P P G G E G L G G
Sbjct: 155 RGPPGPPGLPGPSGITIPGKPGAQGVP-GPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQP 213
Query: 76 GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
G AP G P G P +PGL+ L G G G G+ +G+ G
Sbjct: 214 GLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPG-DKGESGPPGVPGPRGEPG 267
Score = 35.4 bits (80), Expect = 0.020
Identities = 49/168 (29%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 3 PEGARAPAG--------GGPGR----GSAGPPGAALREPEALPPLGGL-----------E 39
P+G R PAG G PG G GP G L P LP GL E
Sbjct: 323 PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQG--LGGPPGLPGSAGLPGRRGPPGPKGE 380
Query: 40 HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFW----------TGVLGTSPAPALGAGPCA 89
GP P G G D AG+ + G TG G GP
Sbjct: 381 AGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGV 440
Query: 90 LGARLPR----CPSRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGV 131
GA + P +PGL G+ G Q G +GL KG+ G+
Sbjct: 441 AGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGL 488
Score = 34.7 bits (78), Expect = 0.034
Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSED------DAED 58
G + P+G G+ GPPG +P L G G P+G G D D E
Sbjct: 290 GPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG-PKGDRGPAGVPGLLGDRGEPGEDGEP 348
Query: 59 VTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-----FQ 113
G L G G+ G++ P P G P P PG+ +RG +G +
Sbjct: 349 GEQGPQGLGGP--PGLPGSAGLPGRRGPPGPKGEAGPGGP--PGVPGIRGDQGPSGLAGK 404
Query: 114 PGRQRSRGLRAAKGDSG 130
PG RGL A G G
Sbjct: 405 PGVPGERGLPGAHGPPG 421
Score = 30.8 bits (68), Expect = 0.49
Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 12 GGPGRGSAGPPG-AALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVTAGRCFLTG 68
G PG G AG PG A P +P G+ GP P G G E AG G
Sbjct: 490 GPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNG 549
Query: 69 AFWTGVLGTSPAPALGAG 86
VLG P G G
Sbjct: 550 GVEGAVLGKGGKPQFGLG 567
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 7 RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
R GG G G G G L P +LPP G R GGGG S DVTAGR
Sbjct: 324 REKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTG--RGEGGGGGSR---ADVTAGRARP 377
Query: 67 TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
W +G +PAP L PC A + + G R G PG +
Sbjct: 378 RRRRWEPLRAQRSGARPGAPAPPL---PCLPPAAVCHALAGAGAPGGRLELGLSPGTRLI 434
Query: 120 RGLRAA 125
RG AA
Sbjct: 435 RGGGAA 440
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 7 RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
R GG G G G G L P +LPP G R GGGG S DVTAGR
Sbjct: 324 REKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTG--RGEGGGGGSR---ADVTAGRARP 377
Query: 67 TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
W +G +PAP L PC A + + G R G PG +
Sbjct: 378 RRRRWEPLRAQRSGARPGAPAPPL---PCLPPAAVCHALAGAGAPGGRLELGLSPGTRLI 434
Query: 120 RGLRAA 125
RG AA
Sbjct: 435 RGGGAA 440
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.9 bits (89), Expect = 0.002
Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALP-PLGGLEHGPLRPSGGGGWS--EDDAEDVT 60
EG PAG RG GPPG + + +P PL GPL P G G S E D DV
Sbjct: 1030 EGPVGPAGKKGSRGERGPPGPTGK--DGIPGPL-----GPLGPPGAAGPSGEEGDKGDVG 1082
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR-CPSRPGLEALRGLRGFQPGRQRS 119
A G G+ P G R P P PG + +G RG
Sbjct: 1083 A----------PGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRG-------P 1125
Query: 120 RGLRAAKGDSGV 131
GL KGD GV
Sbjct: 1126 PGLFGQKGDDGV 1137
Score = 36.6 bits (83), Expect = 0.009
Identities = 43/137 (31%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-EHGPLRPSGGGGWSEDDAEDVTA 61
P GAR P G G G PG + EP L G + GPL PSG G D
Sbjct: 1344 PMGARGPPGRVGPEGLRGIPG-PVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEK 1402
Query: 62 GRCFLTGAFW----TGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ 113
G L G G G P + P G P P PG + G G Q
Sbjct: 1403 GHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLG-Q 1461
Query: 114 PGRQRSRGLRAAKGDSG 130
G + S G +GD+G
Sbjct: 1462 KGSKGSPGSMGPRGDTG 1478
Score = 33.9 bits (76), Expect = 0.058
Identities = 51/157 (32%), Positives = 60/157 (38%), Gaps = 36/157 (22%)
Query: 3 PEGARAPAG--------GGPG-------RGSAGPPG-AALREPEALPPLGGLE--HGPLR 44
P GA P+G G PG +G AGPPG +R P P G + G
Sbjct: 1065 PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRG 1124
Query: 45 PSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPA-------LGA-GPCALGARLPR 96
P G G DD R F+ G+ G P +G+ GP GA PR
Sbjct: 1125 PPGLFGQKGDDGV-----RGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGP--HGAPGPR 1177
Query: 97 CPSRP-GLEALRGLRG--FQPGRQRSRGLRAAKGDSG 130
P P G E GL G QPG +G R GD G
Sbjct: 1178 GPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPG 1214
Score = 32.7 bits (73), Expect = 0.13
Identities = 36/128 (28%), Positives = 41/128 (32%), Gaps = 35/128 (27%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G + P G +GS GP G LP G L P G G S D G
Sbjct: 1242 PPGKKGPPGEDGAKGSVGPTG--------LP-------GDLGPPGDPGVSGIDGSPGEKG 1286
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
P G GP P PG RG G GR+ G
Sbjct: 1287 ---------------DPGDVGGPGPPGASGE----PGAPGPPGKRGPSGHM-GREGREGE 1326
Query: 123 RAAKGDSG 130
+ AKG+ G
Sbjct: 1327 KGAKGEPG 1334
Score = 29.6 bits (65), Expect = 1.1
Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 29/126 (23%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
G P G RG+ GPPG + E P G L P G G GR
Sbjct: 572 GQPGPPGEDGERGAEGPPGPTGQAGEPGP------RGLLGPRGSPG---------PTGRP 616
Query: 65 FLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRA 124
+TG + +P GP P P PG + G +G PG Q G
Sbjct: 617 GVTG------IDGAPGAKGNVGP-------PGEPGPPGQQGNHGSQGL-PGPQGLIGTPG 662
Query: 125 AKGDSG 130
KG G
Sbjct: 663 EKGPPG 668
Score = 28.9 bits (63), Expect = 1.9
Identities = 40/145 (27%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPE-ALPPLGGLE-----------HGPLRPSGGGGW 51
+G P G G GPPG+A + + +P L G GPL P G G
Sbjct: 760 DGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGK 819
Query: 52 SEDDAEDVTAGRCFLTGAFW-TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
S + G G+ G G + P GA P P GL L+G
Sbjct: 820 SGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGA--PGIPGEKGLPGLQGPP 877
Query: 111 GF-----QPGRQRSRGLRAAKGDSG 130
GF PG Q G G G
Sbjct: 878 GFPGPKGPPGHQGKDGRPGHPGQRG 902
Score = 26.6 bits (57), Expect = 9.2
Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 22/141 (15%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDVT 60
P+G G RG GPPG + LP L G E G L P G G ++
Sbjct: 921 PQGKTGEVGPLGERGPPGPPGPP--GEQGLPGLEGREGAKGELGPPGPLG------KEGP 972
Query: 61 AGRCFLTGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPS----RPGLEALRGL 109
AG G TG+ G P + G R P P+ PG G
Sbjct: 973 AGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGP 1032
Query: 110 RGFQPGRQRSRGLRAAKGDSG 130
G G++ SRG R G +G
Sbjct: 1033 VG-PAGKKGSRGERGPPGPTG 1052
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 38.5 bits (88), Expect = 0.002
Identities = 43/136 (31%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA------LREPEALPPLGGLEHGPLRPSGGGGWSEDDA 56
P G R P G RGS GPPG + E PP E GP+ P+G G
Sbjct: 444 PPGPRGPRGD---RGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKG 500
Query: 57 EDVTAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPG 115
+ G G+ G G S P P G P+ P PG + L+G G +PG
Sbjct: 501 SKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGP--PGFQGLQGTVG-EPG 557
Query: 116 RQRSRGLRAAKGDSGV 131
RGL G G+
Sbjct: 558 VPGPRGLPGLPGVPGM 573
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 38.5 bits (88), Expect = 0.002
Identities = 40/129 (31%), Positives = 52/129 (40%), Gaps = 26/129 (20%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAEDV 59
G + P G +G GPPG ++ P+ P GL GP P G G E
Sbjct: 768 GVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTG------EKG 821
Query: 60 TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
G + GA TG +G P A +GP P R G + GLRG PG +
Sbjct: 822 AQGSPGVKGA--TGPVG--PPGASVSGP----------PGRDGQQGQTGLRG-TPGEKGP 866
Query: 120 RGLRAAKGD 128
RG + G+
Sbjct: 867 RGEKGEPGE 875
Score = 33.5 bits (75), Expect = 0.075
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 37/157 (23%)
Query: 4 EGARAPAGGGPGR----GSAGPPGAALREPEALPPLGGLEH-GPLRPSGGGGW-----SE 53
E RA GGPG+ G GPPG P G H G PSG G S
Sbjct: 1381 EKGRAGMPGGPGKSGSMGPVGPPG----------PAGERGHPGAPGPSGSPGLPGVPGSM 1430
Query: 54 DDAEDVTAGRCFLTG----------AFWTG----VLGTSPAPALGAGPCALGAR-LPRCP 98
D + + F+ A++T + + AP P GA P P
Sbjct: 1431 GDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAP 1490
Query: 99 SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGVGI 133
PGL G G Q PG + G + KGD G+GI
Sbjct: 1491 GSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGI 1527
Score = 33.1 bits (74), Expect = 0.098
Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 29/136 (21%)
Query: 12 GGPG----RGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAEDVTAG 62
G PG G GPPG + E PP G+ GP+ P G G G
Sbjct: 1012 GDPGCVGSPGLPGPPGLPGQRGEEGPP--GMRGSPGPPGPIGPPGFPGAVGSPGLPGLQG 1069
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--------QP 114
LTG TG G P P A G PGL ++G RG+ +P
Sbjct: 1070 ERGLTGL--TGDKGEPGPPGQPGYPGATGP--------PGLPGIKGERGYTGSAGEKGEP 1119
Query: 115 GRQRSRGLRAAKGDSG 130
G S GL G +G
Sbjct: 1120 GPPGSEGLPGPPGPAG 1135
Score = 32.0 bits (71), Expect = 0.22
Identities = 44/152 (28%), Positives = 52/152 (34%), Gaps = 24/152 (15%)
Query: 5 GARAPAGGGPGRGSAGPPG--AALREP-EALPPLGGLEHGPLR------PSGGGGWSEDD 55
G PAG G GP G A EP E P L L+ G +R PSG G
Sbjct: 605 GEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPP 664
Query: 56 A-----EDVTAGRCFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRPGL 103
+ AG L G G GT+ P L P G P+ G
Sbjct: 665 GFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGC 724
Query: 104 EALRGLRGF---QPGRQRSRGLRAAKGDSGVG 132
A L+G GR G + +G GVG
Sbjct: 725 TACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756
Score = 29.6 bits (65), Expect = 1.1
Identities = 42/138 (30%), Positives = 53/138 (38%), Gaps = 19/138 (13%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGP-LR----PSGGGGWSEDDAED 58
EG R P+G G GPPG ++ P L L G + P LR P+G G
Sbjct: 1188 EGIRGPSGLPGSPGPPGPPG--IQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFK 1245
Query: 59 VTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
G L G G G++ P P A+G + RPG G G P
Sbjct: 1246 GKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQ-----GRPGPPGHVGPPG-PP 1299
Query: 115 GRQRSRGLRAA--KGDSG 130
G+ G+ A KGD G
Sbjct: 1300 GQPGPAGISAVGLKGDRG 1317
Score = 29.3 bits (64), Expect = 1.4
Identities = 37/143 (25%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 4 EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
+G R G +G GPPG+ E LP GP P+G G G
Sbjct: 1104 KGERGYTGSAGEKGEPGPPGS-----EGLP-------GPPGPAGPRGERGPQGNSGEKGD 1151
Query: 64 CFLTG----------AFWTGVLGTSPAPALGAGPCALGAR----LPRCPSRPGLEALRGL 109
G + G +G+ P A + G R LP P PG ++G
Sbjct: 1152 QGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGP 1211
Query: 110 RGFQ--PGRQRSRGLRAAKGDSG 130
G G+ GLR G +G
Sbjct: 1212 AGLDGLDGKDGKPGLRGDPGPAG 1234
Score = 28.9 bits (63), Expect = 1.9
Identities = 41/139 (29%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 3 PEGARAPAG-----GGPG----RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
P G P G G PG G GPPGA++ P P G + G G G
Sbjct: 810 PRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGP---PGRDG-QQGQTGLRGTPGEKG 865
Query: 54 DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAG----PCALG-ARLPRCPSRPGLEALRG 108
E G C G AP L G P G +P P PG+ L+G
Sbjct: 866 PRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQG 925
Query: 109 LRGFQPGRQRSRGLRAAKG 127
+ G G GL A G
Sbjct: 926 VPG-NNGLPGQPGLTAELG 943
Score = 26.9 bits (58), Expect = 7.0
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 3 PEGARAPAG--GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDV 59
P+G + G G G G GPPG LP G GP P G G S ++
Sbjct: 430 PKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEG 489
Query: 60 TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRP-GLEALRGLRGFQPGRQR 118
G+ GV G PC + CP+ P G + GL G +PG +
Sbjct: 490 PGGK-----PGKPGVKGEK------GDPCEV------CPTLPEGFQNFVGLPG-KPGPKG 531
Query: 119 SRGLRA-AKGDSGV 131
G A+GD G+
Sbjct: 532 EPGDPVPARGDPGI 545
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 38.1 bits (87), Expect = 0.003
Identities = 47/153 (30%), Positives = 55/153 (35%), Gaps = 25/153 (16%)
Query: 3 PEGARAPAG-------GGPGR-------------GSAGPPGAALREPEALPPLGGLEHGP 42
P G R P G G PG+ G AGPPG LP L G E GP
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKG-ERGP 312
Query: 43 LRPSGGGGWSEDDAEDVTAGRCFLTGAFWT-GVLGTSPAPALGAGPCALGARLPRCPS-R 100
GG G + G+ LTG G G P P G P P+
Sbjct: 313 AGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGY 372
Query: 101 PGLEALRGLRGF--QPGRQRSRGLRAAKGDSGV 131
PG + RG G +PG GL KG+ G+
Sbjct: 373 PGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGL 405
Score = 33.5 bits (75), Expect = 0.075
Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P+G PAG RG GPPG ++P G + GP G G+ + G
Sbjct: 125 PKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPG-QQGPTGAPGPRGFPGEKGAPGVPG 183
Query: 63 RCFLTGAFWTGVLGT--------SPAPALGAGPCALGARLPR-CPSRPGLEALRGLRGFQ 113
G G G P +GP +G R P +PG++ RG G
Sbjct: 184 MNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEM 243
Query: 114 -----PGRQRSRGLRAAKG 127
PG Q G R +G
Sbjct: 244 GPIGPPGPQGPPGERGPEG 262
Score = 29.6 bits (65), Expect = 1.1
Identities = 39/135 (28%), Positives = 46/135 (34%), Gaps = 10/135 (7%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGG-----GWSEDDAEDV 59
G PAG G +GPPG L GL GP PS G G E
Sbjct: 63 GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP-GPPGPSAVGKPGVPGLPGKPGERG 121
Query: 60 TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--QPGRQ 117
G G G+ G P P G +P P + G G RGF + G
Sbjct: 122 PYGPKGDVGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAP 179
Query: 118 RSRGLRAAKGDSGVG 132
G+ KG+ G G
Sbjct: 180 GVPGMNGQKGEMGYG 194
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 38.1 bits (87), Expect = 0.003
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
P GAR P G G G PG++ LR P L G + RP G G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 53 EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
+ G G G LG+ P + P L + P P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483
Query: 99 SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
PGL L GL G + PGRQ + GL+ + G G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Score = 33.1 bits (74), Expect = 0.098
Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)
Query: 4 EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
EG P G G PG G GPPG + P + LP L GL+ G P G G
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844
Query: 53 EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
D E + G R + G G + P A+G
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902
Query: 95 PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
P P PG RG G PG + RG AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937
Score = 32.3 bits (72), Expect = 0.17
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)
Query: 17 GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
G GPPG L P+ L G E GP PSG
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277
Query: 66 LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
L G + G P L P G P PG E ++G RGF PG G++
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331
Query: 126 KGDSG 130
KGD G
Sbjct: 332 KGDIG 336
Score = 31.2 bits (69), Expect = 0.37
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 12 GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
G PG +G AG PG R +P L GL+ P P+G G D G L G
Sbjct: 955 GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013
Query: 70 FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
G +G P LG P RPGL + GL+G + S G R
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Query: 126 KGDSGV--GIRRKGSTRREG 143
GD G+ + +KG + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
+G + P G G PG G AGPPG + L G+ P P G E
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651
Query: 58 DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
G G G P GP + L +C P PG + G+ G
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 113 -QPGRQRSRGLRAAKGDSG 130
PG + +G KG G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721
Score = 29.3 bits (64), Expect = 1.4
Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG GS G PG LP G HG L G G
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
L G G+ G P P +G R + P G + GL PG +
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183
Query: 119 SRGLRAAKGDSG 130
+ G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 38.1 bits (87), Expect = 0.003
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
P GAR P G G G PG++ LR P L G + RP G G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 53 EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
+ G G G LG+ P + P L + P P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483
Query: 99 SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
PGL L GL G + PGRQ + GL+ + G G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Score = 33.1 bits (74), Expect = 0.098
Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)
Query: 4 EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
EG P G G PG G GPPG + P + LP L GL+ G P G G
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844
Query: 53 EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
D E + G R + G G + P A+G
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902
Query: 95 PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
P P PG RG G PG + RG AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937
Score = 32.3 bits (72), Expect = 0.17
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)
Query: 17 GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
G GPPG L P+ L G E GP PSG
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277
Query: 66 LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
L G + G P L P G P PG E ++G RGF PG G++
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331
Query: 126 KGDSG 130
KGD G
Sbjct: 332 KGDIG 336
Score = 31.2 bits (69), Expect = 0.37
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 12 GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
G PG +G AG PG R +P L GL+ P P+G G D G L G
Sbjct: 955 GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013
Query: 70 FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
G +G P LG P RPGL + GL+G + S G R
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Query: 126 KGDSGV--GIRRKGSTRREG 143
GD G+ + +KG + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
+G + P G G PG G AGPPG + L G+ P P G E
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651
Query: 58 DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
G G G P GP + L +C P PG + G+ G
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 113 -QPGRQRSRGLRAAKGDSG 130
PG + +G KG G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721
Score = 29.3 bits (64), Expect = 1.4
Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG GS G PG LP G HG L G G
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
L G G+ G P P +G R + P G + GL PG +
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183
Query: 119 SRGLRAAKGDSG 130
+ G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 38.1 bits (87), Expect = 0.003
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
P GAR P G G G PG++ LR P L G + RP G G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 53 EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
+ G G G LG+ P + P L + P P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483
Query: 99 SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
PGL L GL G + PGRQ + GL+ + G G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Score = 33.1 bits (74), Expect = 0.098
Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)
Query: 4 EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
EG P G G PG G GPPG + P + LP L GL+ G P G G
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844
Query: 53 EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
D E + G R + G G + P A+G
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902
Query: 95 PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
P P PG RG G PG + RG AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937
Score = 32.3 bits (72), Expect = 0.17
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)
Query: 17 GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
G GPPG L P+ L G E GP PSG
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277
Query: 66 LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
L G + G P L P G P PG E ++G RGF PG G++
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331
Query: 126 KGDSG 130
KGD G
Sbjct: 332 KGDIG 336
Score = 31.2 bits (69), Expect = 0.37
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 12 GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
G PG +G AG PG R +P L GL+ P P+G G D G L G
Sbjct: 955 GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013
Query: 70 FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
G +G P LG P RPGL + GL+G + S G R
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Query: 126 KGDSGV--GIRRKGSTRREG 143
GD G+ + +KG + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
+G + P G G PG G AGPPG + L G+ P P G E
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651
Query: 58 DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
G G G P GP + L +C P PG + G+ G
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 113 -QPGRQRSRGLRAAKGDSG 130
PG + +G KG G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721
Score = 29.3 bits (64), Expect = 1.4
Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG GS G PG LP G HG L G G
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
L G G+ G P P +G R + P G + GL PG +
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183
Query: 119 SRGLRAAKGDSG 130
+ G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 38.1 bits (87), Expect = 0.003
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
P GAR P G G G PG++ LR P L G + RP G G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 53 EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
+ G G G LG+ P + P L + P P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483
Query: 99 SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
PGL L GL G + PGRQ + GL+ + G G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Score = 33.1 bits (74), Expect = 0.098
Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)
Query: 4 EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
EG P G G PG G GPPG + P + LP L GL+ G P G G
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844
Query: 53 EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
D E + G R + G G + P A+G
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902
Query: 95 PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
P P PG RG G PG + RG AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937
Score = 32.3 bits (72), Expect = 0.17
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)
Query: 17 GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
G GPPG L P+ L G E GP PSG
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277
Query: 66 LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
L G + G P L P G P PG E ++G RGF PG G++
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331
Query: 126 KGDSG 130
KGD G
Sbjct: 332 KGDIG 336
Score = 31.2 bits (69), Expect = 0.37
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 12 GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
G PG +G AG PG R +P L GL+ P P+G G D G L G
Sbjct: 955 GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013
Query: 70 FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
G +G P LG P RPGL + GL+G + S G R
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Query: 126 KGDSGV--GIRRKGSTRREG 143
GD G+ + +KG + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 4 EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
+G + P G G PG G AGPPG + L G+ P P G E
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651
Query: 58 DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
G G G P GP + L +C P PG + G+ G
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 113 -QPGRQRSRGLRAAKGDSG 130
PG + +G KG G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721
Score = 29.3 bits (64), Expect = 1.4
Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
P G PAG GS G PG LP G HG L G G
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128
Query: 63 RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
L G G+ G P P +G R + P G + GL PG +
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183
Query: 119 SRGLRAAKGDSG 130
+ G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 38.1 bits (87), Expect = 0.003
Identities = 40/128 (31%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 2 EPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
+P G P G +G AGPPG ++LP GL+ P P G E V
Sbjct: 562 DPGGIIGPPGLPGPKGEAGPPG------KSLPGEPGLDGNPGAPGPRGPKGERGLPGV-H 614
Query: 62 GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSR 120
G G G+ G + A P G R LP P PG G+ PGR
Sbjct: 615 GSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGV----PGRDGKP 670
Query: 121 GLRAAKGD 128
GL GD
Sbjct: 671 GLPGPPGD 678
Score = 30.0 bits (66), Expect = 0.83
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 3 PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDA--EDVT 60
P+G G RG GPPG +P P G + + GG +++D+ ++
Sbjct: 398 PQGPPGKEGQRGRRGKTGPPG----KPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHE 453
Query: 61 AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC-PSRPGLEALRGLRGFQPGRQRS 119
AG G+ G L P ++G + + P P + +G RG +PG S
Sbjct: 454 AG----------GLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRG-EPGVIGS 502
Query: 120 RGLRAAKGDSG 130
+G++ GD G
Sbjct: 503 QGVKGEPGDPG 513
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 98 PSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGVGI 133
P PG + L G G PG Q RG + +G+ G+G+
Sbjct: 1056 PGPPGKDGLPGPPG-DPGPQGYRGQKGERGEPGIGL 1090
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 5 GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
G P G +G GPPG P ALP G++ GP P G G
Sbjct: 367 GPHGPPGPKGEKGDTGPPG-----PPALPGSLGIQ-GPQGPPGKEG 406
Score = 28.1 bits (61), Expect = 3.2
Identities = 42/165 (25%), Positives = 53/165 (32%), Gaps = 36/165 (21%)
Query: 3 PEGARAPAGGGPGRGS---AGPPGAALREPEALPPL----GGLE----HGPLRPSGGGGW 51
P GA+ G G GPPG E + L GG+ GP P G G
Sbjct: 793 PTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGD 852
Query: 52 SEDDAEDVTAGRCFLTG----------AFWTGVLGTSPAPALGAGPCALGARLPRCP--- 98
E G L G A G+ G S P P G R P
Sbjct: 853 PGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGD 912
Query: 99 ----------SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGV 131
+PG+ G+ G Q G+ RG + +GD G+
Sbjct: 913 IGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGI 957
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,644,651
Number of Sequences: 37866
Number of extensions: 567045
Number of successful extensions: 4778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 3322
Number of HSP's gapped (non-prelim): 1518
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.