Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169165327

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169166135 PREDICTED: hypothetical protein [Homo sapiens]           326   4e-90
gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]           326   4e-90
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    47   7e-06
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    47   7e-06
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    47   7e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      46   1e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      44   4e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                44   4e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               44   6e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      44   7e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     43   1e-04
gi|154355000 KH-type splicing regulatory protein [Homo sapiens]        43   1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    41   5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    41   5e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          40   8e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     40   0.001
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       40   0.001
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         39   0.001
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                39   0.001
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ...    39   0.002
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ...    39   0.002
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    39   0.002
gi|18641360 collectin sub-family member 12 [Homo sapiens]              39   0.002
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        39   0.002
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           38   0.003
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    38   0.003
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    38   0.003
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    38   0.003
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    38   0.003
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]         38   0.003

>gi|169166135 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  326 bits (836), Expect = 4e-90
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT
Sbjct: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
           AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR
Sbjct: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120

Query: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
           GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL
Sbjct: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155


>gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  326 bits (836), Expect = 4e-90
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT
Sbjct: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
           AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR
Sbjct: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120

Query: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155
           GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL
Sbjct: 121 GLRAAKGDSGVGIRRKGSTRREGWTPEAAERQKRL 155


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
            P GAR  +G     G AGPPG     P   PP  GL  G   +  SGG  WS   + D  
Sbjct: 990  PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 1046

Query: 61   AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
             G   L      G+ G    P L      +GA  +P  P  PG E + G +G   G + S
Sbjct: 1047 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 1100

Query: 120  RGLRAAKGDSGVG 132
            RG +   G  GVG
Sbjct: 1101 RGEKGDPGKDGVG 1113



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)

Query: 12  GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
           G PG G  GPPG    +    PP     H  L       SG GG    D E +   R F 
Sbjct: 853 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 904

Query: 67  TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
                 G  G    P L   P   G         A LP  P R G     GL G    PG
Sbjct: 905 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 959

Query: 116 RQRSRGLRAAKGDSG 130
           R+   G    KG  G
Sbjct: 960 REGPPGRTGQKGSLG 974



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)

Query: 3    PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
            P+G R   G  G PG+         G  GPPG             ++  PE  P   G  
Sbjct: 1094 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 1153

Query: 40   HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
             GP  P G  G   +       G     G+ ++   G LG +   A G     GP     
Sbjct: 1154 -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 1212

Query: 93   R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
            R         P  P RPG+  L+G +G         G+R   G  G
Sbjct: 1213 RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 1258



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)

Query: 12  GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
           G PGR  AGPPG+  L  P  LP        P+ P G  G                    
Sbjct: 764 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 794

Query: 71  WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
               L T P P    GP        R   P  PG +   G  G Q  PG     G +  K
Sbjct: 795 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 852

Query: 127 GDSGVGIR 134
           GD GVG R
Sbjct: 853 GDPGVGER 860


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
           P GAR  +G     G AGPPG     P   PP  GL  G   +  SGG  WS   + D  
Sbjct: 575 PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 631

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
            G   L      G+ G    P L      +GA  +P  P  PG E + G +G   G + S
Sbjct: 632 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 685

Query: 120 RGLRAAKGDSGVG 132
           RG +   G  GVG
Sbjct: 686 RGEKGDPGKDGVG 698



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)

Query: 12  GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
           G PG G  GPPG    +    PP     H  L       SG GG    D E +   R F 
Sbjct: 438 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 489

Query: 67  TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
                 G  G    P L   P   G         A LP  P R G     GL G    PG
Sbjct: 490 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 544

Query: 116 RQRSRGLRAAKGDSG 130
           R+   G    KG  G
Sbjct: 545 REGPPGRTGQKGSLG 559



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)

Query: 3   PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
           P+G R   G  G PG+         G  GPPG             ++  PE  P   G  
Sbjct: 679 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 738

Query: 40  HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
            GP  P G  G   +       G     G+ ++   G LG +   A G     GP     
Sbjct: 739 -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 797

Query: 93  R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           R         P  P RPG+  L+G +G         G+R   G  G
Sbjct: 798 RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 843



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)

Query: 12  GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
           G PGR  AGPPG+  L  P  LP        P+ P G  G                    
Sbjct: 349 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 379

Query: 71  WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
               L T P P    GP        R   P  PG +   G  G Q  PG     G +  K
Sbjct: 380 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 437

Query: 127 GDSGVGIR 134
           GD GVG R
Sbjct: 438 GDPGVGER 445


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 46/133 (34%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHG--PLRPSGGGGWSEDDAEDVT 60
           P GAR  +G     G AGPPG     P   PP  GL  G   +  SGG  WS   + D  
Sbjct: 755 PAGARGESGLAGAPGPAGPPGPP--GPPG-PPGPGLPAGFDDMEGSGGPFWSTARSADGP 811

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGA-RLPRCPSRPGLEALRGLRGFQPGRQRS 119
            G   L      G+ G    P L      +GA  +P  P  PG E + G +G   G + S
Sbjct: 812 QGPPGL-----PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQG-PKGDRGS 865

Query: 120 RGLRAAKGDSGVG 132
           RG +   G  GVG
Sbjct: 866 RGEKGDPGKDGVG 878



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 42/135 (31%), Positives = 45/135 (33%), Gaps = 29/135 (21%)

Query: 12  GGPGRGSAGPPGAALREPEALPPLGGLEHGPL-----RPSGGGGWSEDDAEDVTAGRCFL 66
           G PG G  GPPG    +    PP     H  L       SG GG    D E +   R F 
Sbjct: 618 GDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFIDMEGSGFGG----DLEALRGPRGF- 669

Query: 67  TGAFWTGVLGTSPAPALGAGPCALG---------ARLPRCPSRPGLEALRGLRG--FQPG 115
                 G  G    P L   P   G         A LP  P R G     GL G    PG
Sbjct: 670 -----PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPG 724

Query: 116 RQRSRGLRAAKGDSG 130
           R+   G    KG  G
Sbjct: 725 REGPPGRTGQKGSLG 739



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 39/166 (23%)

Query: 3    PEGARAPAG--GGPGR---------GSAGPPGA------------ALREPEALPPLGGLE 39
            P+G R   G  G PG+         G  GPPG             ++  PE  P   G  
Sbjct: 859  PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 918

Query: 40   HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWT---GVLGTSPAPALGA----GPCALGA 92
             GP  P G  G   +       G     G+ ++   G LG +   A G     GP     
Sbjct: 919  -GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG 977

Query: 93   R--------LPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
            R         P  P RPG+  L+G +G         G+R   G  G
Sbjct: 978  RPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG 1023



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 40/128 (31%), Positives = 44/128 (34%), Gaps = 36/128 (28%)

Query: 12  GGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAF 70
           G PGR  AGPPG+  L  P  LP        P+ P G  G                    
Sbjct: 529 GPPGR--AGPPGSPCLPGPPGLPC-------PVSPLGPAG-------------------- 559

Query: 71  WTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGFQ--PGRQRSRGLRAAK 126
               L T P P    GP        R   P  PG +   G  G Q  PG     G +  K
Sbjct: 560 --PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDK 617

Query: 127 GDSGVGIR 134
           GD GVG R
Sbjct: 618 GDPGVGER 625


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 43/134 (32%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+G   P G G  +G  GPPG   +  + LP  GG      +P   G   +  A     G
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGP--QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG 673

Query: 63  RCFLTGAFWTGVLGTSPAPAL--GAGP----CALGARLPRCPSRPGLEALRGLRGFQPGR 116
           +         G  G + AP L  GAGP       GA  P  P  PG     GL+G  PG 
Sbjct: 674 KGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP--PGPPGAAGTPGLQG-MPGE 730

Query: 117 QRSRGLRAAKGDSG 130
           +   G    KGD G
Sbjct: 731 RGGLGSPGPKGDKG 744



 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 46/138 (33%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEAL----PPLGGLEHGPLRPSGGGGWSEDDAED 58
           P G   P G    RGS G PGAA   P A     PP      GP  PSG  G    D   
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAA-GFPGARGLPGPPGSNGNPGPPGPSGSPG---KDGPP 905

Query: 59  VTAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF----- 112
             AG     G+   +G  G +  P     P A G   P  P   G+  + G RG      
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP--PGAPGPLGIAGITGARGLAGPPG 963

Query: 113 QPGRQRSRGLRAAKGDSG 130
            PG + S G +  KG+SG
Sbjct: 964 MPGPRGSPGPQGVKGESG 981



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 41/134 (30%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 3   PEGARAPAGGGPGRGSAGPPG-AALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
           P G   PAG    +G  G PG   +  P   P   G E GP  P+G  G    + E    
Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERG-ETGPPGPAGFPGAPGQNGEPGGK 824

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCA----LGARLPR-CPSRPGLEALRGLRGFQPGR 116
           G     G    G       P  G+GP       G +  R  P  PG     G RG  PG 
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL-PGP 883

Query: 117 QRSRGLRAAKGDSG 130
             S G     G SG
Sbjct: 884 PGSNGNPGPPGPSG 897



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-EHGPLRPSGG-GGWSEDDAEDVT 60
            P G   PAG    RG +GP G A     A  P G     GP  P G  G   E  A  + 
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPA----GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106

Query: 61   AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPS-RPGLEALRGLRG--FQPGRQ 117
              R F       G  G +        P   G R P  PS  PG +   G  G    PG +
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPR 1166

Query: 118  RSRGLRAAKGDSG 130
             +RG R ++G  G
Sbjct: 1167 GNRGERGSEGSPG 1179



 Score = 35.0 bits (79), Expect = 0.026
 Identities = 40/129 (31%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P GA  P+G     G +G PG        LP   G++ GP    G  G       D   G
Sbjct: 217 PPGAIGPSGPAGKDGESGRPGRP--GERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRNG 273

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSRG 121
               TGA   G+ G +  P     P  +G R  P    RPGL    G RG   G + S G
Sbjct: 274 EKGETGA--PGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARG-NDGARGSDG 330

Query: 122 LRAAKGDSG 130
                G  G
Sbjct: 331 QPGPPGPPG 339



 Score = 32.0 bits (71), Expect = 0.22
 Identities = 38/132 (28%), Positives = 43/132 (32%), Gaps = 4/132 (3%)

Query: 3   PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
           P G     GG    G AG PGA  L      P   G    P    G G   ++ A+    
Sbjct: 385 PPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPG 444

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQ--PGRQR 118
            R     A   GV G          P   GA  LP      G    RG  G    PG + 
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504

Query: 119 SRGLRAAKGDSG 130
             G R A G +G
Sbjct: 505 PAGERGAPGPAG 516



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 45/161 (27%), Positives = 53/161 (32%), Gaps = 41/161 (25%)

Query: 3   PEGARAPAG--------GGPG-RGSAGPPGAALREPEALPPLGGLEH---GPLRPSGGG- 49
           P G R  AG        GGPG RG  G PG    + +  PP    E    GP  PSG   
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG 573

Query: 50  -----GWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP------ 98
                G+      D   G+         G  G    P     P   G   P+ P      
Sbjct: 574 QPGVMGFPGPKGNDGAPGK--------NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625

Query: 99  -------SRPGLEALRGL--RGFQPGRQRSRGLRAAKGDSG 130
                    PG + L+GL   G  PG     G    KGD+G
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666



 Score = 27.3 bits (59), Expect = 5.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREP--EALPPLGGLEHGPLRPSGGG 49
           G + PAG     G AGP GAA  EP  + +P   G+   P  P G G
Sbjct: 501 GEKGPAGERGAPGPAGPRGAA-GEPGRDGVPGGPGMRGMPGSPGGPG 546


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 3   PEGARAPAGGGPGRGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
           PEGAR P G     G +G PG         L   E LP   G + GP  P G  G     
Sbjct: 715 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDG-DTGPTGPQGPQGPRGPP 773

Query: 56  AEDVTAGRCFLTGAFWT----GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG 111
            ++ + G     G   T    G  G + +P L   P  LG R P  P  PG + + G  G
Sbjct: 774 GKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL---PGFLGPRGP--PGEPGEKGVPGKEG 828

Query: 112 FQPGRQRSRGLRAAKGDSGV 131
             PG+    G +  +GD G+
Sbjct: 829 V-PGKPGEPGFKGERGDPGI 847



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 29/130 (22%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           M P G   P G     G+AGPPG      +  PP      GP  PSG  G   ++ ++  
Sbjct: 641 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPP------GPQGPSGLPGIPGEEGKEGR 694

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
            G+               P P    G           P  PG E  RG  GF+ G     
Sbjct: 695 DGK---------------PGPPGEPGKAGE-------PGLPGPEGARGPPGFK-GHTGDS 731

Query: 121 GLRAAKGDSG 130
           G    +G+SG
Sbjct: 732 GAPGPRGESG 741



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 39/139 (28%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA--------LREPEALPPLGGLEHGPLRPSGGGGWSED 54
           P+G   P G     G+ G PGAA        +  P    P G +    LR  G  G   +
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR--GTPGKDGE 432

Query: 55  DAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
             E   AG     G    G  G   AP L   P       P     PGL    G +G   
Sbjct: 433 RGEKGAAGEEGSPGP--VGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKG-DR 489

Query: 115 GRQRSRGLRAAKGDSGVGI 133
           G     G   ++GD G+G+
Sbjct: 490 GAPGIPGSPGSRGDPGIGV 508



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 33/119 (27%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 12  GGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFW 71
           G PG G AGPPG     P   P       G     G  G          AGR  L+    
Sbjct: 502 GDPGIGVAGPPG-----PSGPP-------GDKGSPGSRGLPGFPGPQGPAGRDGLSSLLS 549

Query: 72  TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
            G +           P       P  P  PGL   +G +G  PG+    G    KG++G
Sbjct: 550 PGDINLLAKDVCNDCP-------PGPPGLPGLPGFKGDKGV-PGKPGREGTEGKKGEAG 600


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 3    PEGARAPAGGGPGRGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
            PEGAR P G     G +G PG         L   E LP   G + GP  P G  G     
Sbjct: 1268 PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDG-DTGPTGPQGPQGPRGPP 1326

Query: 56   AEDVTAGRCFLTGAFWT----GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG 111
             ++ + G     G   T    G  G + +P L   P  LG R P  P  PG + + G  G
Sbjct: 1327 GKNGSPGSPGEPGPSGTPGQKGSKGENGSPGL---PGFLGPRGP--PGEPGEKGVPGKEG 1381

Query: 112  FQPGRQRSRGLRAAKGDSGV 131
              PG+    G +  +GD G+
Sbjct: 1382 V-PGKPGEPGFKGERGDPGI 1400



 Score = 36.6 bits (83), Expect = 0.009
 Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 12   GGPGRGSAGPPG-AALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDVTAGRCFLTG 68
            G PG G AGPPG +     +  P   GL    GP  P+G  G   +  E    G+  L+ 
Sbjct: 1040 GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGLSS 1099

Query: 69   AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGD 128
                G +           P       P  P  PGL   +G +G  PG+    G    KG+
Sbjct: 1100 LLSPGDINLLAKDVCNDCP-------PGPPGLPGLPGFKGDKGV-PGKPGREGTEGKKGE 1151

Query: 129  SG 130
            +G
Sbjct: 1152 AG 1153



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 29/130 (22%)

Query: 1    MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
            M P G   P G     G+AGPPG      +  PP      GP  PSG  G   ++ ++  
Sbjct: 1194 MGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPP------GPQGPSGLPGIPGEEGKEGR 1247

Query: 61   AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
             G+               P P    G           P  PG E  RG  GF+ G     
Sbjct: 1248 DGK---------------PGPPGEPGKAGE-------PGLPGPEGARGPPGFK-GHTGDS 1284

Query: 121  GLRAAKGDSG 130
            G    +G+SG
Sbjct: 1285 GAPGPRGESG 1294



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 37/133 (27%), Positives = 43/133 (32%), Gaps = 39/133 (29%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVT 60
           P G   P G     G AGPPG     P ++    GL  E G   P G  G          
Sbjct: 624 PSGVAGPQGEKGDVGPAGPPGV----PGSVVQQEGLKGEQGAPGPRGHQG---------- 669

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ--PGRQR 118
                            +P P    GP     R       PGL+ LRG +G    PG   
Sbjct: 670 -----------------APGPPGARGPIGPEGR----DGPPGLQGLRGKKGDMGPPGIPG 708

Query: 119 SRGLRAAKGDSGV 131
             GL+   G  GV
Sbjct: 709 LLGLQGPPGPPGV 721



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 33/128 (25%), Positives = 38/128 (29%), Gaps = 35/128 (27%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   P G     G  GPPG                          G   +  ED   G
Sbjct: 745 PPGPTGPPGKDGPNGPPGPPGTK------------------------GEPGERGEDGLPG 780

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
           +  L G      L   P     AG           P  PG   +RG +G Q G +   GL
Sbjct: 781 KPGLRGEIGEQGLAGRPGEKGEAG----------LPGAPGFPGVRGEKGDQ-GEKGELGL 829

Query: 123 RAAKGDSG 130
              KGD G
Sbjct: 830 PGLKGDRG 837



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 44/126 (34%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P+G   P G     G+ G PGAA   P A   +G    GP  P G  G           G
Sbjct: 893  PQGPTGPPGAKGQEGAHGAPGAA-GNPGAPGHVGA--PGPSGPPGSVGAPGLRGTPGKDG 949

Query: 63   RCFLTGAFWTGVLGTSPAPALGAG-PCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRG 121
                 GA   G  G SP P    G P A G  LP  P + G +   GLRG  PG     G
Sbjct: 950  ERGEKGA--AGEEG-SPGPVGPRGDPGAPG--LPGPPGK-GKDGEPGLRG-SPGLPGPLG 1002

Query: 122  LRAAKG 127
             +AA G
Sbjct: 1003 TKAACG 1008


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
            +G +   G    +G  G PG     P   P + GL+ G L P G  G+   D      G+
Sbjct: 1254 QGLKGERGSEGNKGKKGAPG-----PSGKPGIPGLQ-GLLGPKGIQGYHGADGISGNPGK 1307

Query: 64   CFLTGAFWT-GVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGF--QPGRQRS 119
                G     G+ G      L   P   G +     P  PG++  +G +G   QPG Q  
Sbjct: 1308 IGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGK 1367

Query: 120  RGLRAAKGDSG 130
            RG R A+GD G
Sbjct: 1368 RGHRGAQGDQG 1378



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 4    EGARAPAG-----GGPG-RGSAGPPG-------AALREPEALPPLGGLEHGPLRPSGGGG 50
            +G R P G     G PG RG  G PG          R     P L GL+ G + P G  G
Sbjct: 950  QGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQ-GDVGPPGEMG 1008

Query: 51   WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
                   +  +G     GA   G +GT+ +   G G   L    P  P   GL+   GL+
Sbjct: 1009 MEGPPGTEGESGLQGEPGA--KGDVGTAGSVG-GTGEPGLRGE-PGAPGEEGLQGKDGLK 1064

Query: 111  GFQPGRQRSRGLRAAKGDSG 130
            G   G    RGL    G+ G
Sbjct: 1065 GVPGG----RGLPGEDGEKG 1080



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 25/152 (16%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
           G   P G    RG  GPPG    + E  P     E GP    G  G++ +   +   G  
Sbjct: 783 GPEGPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEV 842

Query: 65  FLTGAFW-------------TGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLE 104
              G                 G+ G+         P  LG +        P  P  PG  
Sbjct: 843 GDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPI 902

Query: 105 ALRGLRGF-----QPGRQRSRGLRAAKGDSGV 131
              GL G       PG Q  +G R ++G  G+
Sbjct: 903 GPLGLPGHVGARGPPGSQGPKGQRGSRGPDGL 934


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 42/128 (32%), Positives = 48/128 (37%), Gaps = 32/128 (25%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   P G    +G  GPPG    EP A  P+     GP  P G  G + DD E    G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEP-GEPGASGPM-----GPRGPPGPPGKNGDDGEAGKPG 239

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
           R                 P     P   GAR    P   GL  ++G RGF        GL
Sbjct: 240 R-----------------PGERGPPGPQGAR--GLPGTAGLPGMKGHRGFS-------GL 273

Query: 123 RAAKGDSG 130
             AKGD+G
Sbjct: 274 DGAKGDAG 281



 Score = 43.1 bits (100), Expect = 9e-05
 Identities = 44/139 (31%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
           +GA   AG     G AGPPG     P A+   G  E GP  P G  G      E    G 
Sbjct: 325 DGATGAAGPPGPTGPAGPPGF----PGAVGAKG--EAGPQGPRGSEGPQGVRGEPGPPGP 378

Query: 64  CFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
               G           G  G + AP +   P   GAR P  P  PG          +PG 
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA 438

Query: 117 QRSRGLRAAKGDSG-VGIR 134
             S+G   AKG+ G VG++
Sbjct: 439 PGSKGDTGAKGEPGPVGVQ 457



 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 48/146 (32%), Positives = 57/146 (39%), Gaps = 20/146 (13%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA-------LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
           P GA  PAG     G+ GPPG A        + P   P   GL  GP  P G  G   + 
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-GPAGPPGEAGKPGEQ 661

Query: 56  AEDVTAGRCFLTGAFW-------TGVLG-TSPAPALGA--GPCALGARLPR-CPSRPGLE 104
                 G    +GA          GV G   PA   GA   P   GA+     P  PG +
Sbjct: 662 GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ 721

Query: 105 ALRGLRGFQPGRQRSRGLRAAKGDSG 130
              GL+G  PG + + GL   KGD G
Sbjct: 722 GAPGLQG-MPGERGAAGLPGPKGDRG 746



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 48/137 (35%), Positives = 56/137 (40%), Gaps = 22/137 (16%)

Query: 5    GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
            G R P G     G AGPPG + RE        G E  P R  G  G   D  E   AG  
Sbjct: 992  GERGPPGPMGPPGLAGPPGESGREGAP-----GAEGSPGR-DGSPGAKGDRGETGPAGPP 1045

Query: 65   FLTGAFW----TGVLGTS-----PAPALGAGPCA-LGARLPRCPSRPGLEALRGLRGFQP 114
               GA       G  G S       PA  AGP   +GAR P  P  P     RG +G + 
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP-----RGDKG-ET 1099

Query: 115  GRQRSRGLRAAKGDSGV 131
            G Q  RG++  +G SG+
Sbjct: 1100 GEQGDRGIKGHRGFSGL 1116



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 21/136 (15%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+GA    G    RG  GPPGA    P       G + GP  P+G  G   +     + G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAV--GPAGKDGEAGAQ-GPPGPAGPAGERGEQGPAGSPG 641

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--------QP 114
              L G    G  G +  P     P  LGA        PG    RG RGF         P
Sbjct: 642 FQGLPGP--AGPPGEAGKPGEQGVPGDLGA--------PGPSGARGERGFPGERGVQGPP 691

Query: 115 GRQRSRGLRAAKGDSG 130
           G    RG   A G+ G
Sbjct: 692 GPAGPRGANGAPGNDG 707



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 41/132 (31%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 3   PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
           P G   P G   G GS G PGA  +  P+      G   GP  P G  G +    E    
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGLP 535

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR--LPRCPSRPGLEALRGLRGFQPGRQRS 119
           G   LTG+        SP P    GP     +   P  P  PG     G+ GF PG + +
Sbjct: 536 GAKGLTGS------PGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF-PGPKGA 588

Query: 120 RGLRAAKGDSGV 131
            G     G+ GV
Sbjct: 589 AGEPGKAGERGV 600



 Score = 36.2 bits (82), Expect = 0.012
 Identities = 43/132 (32%), Positives = 50/132 (37%), Gaps = 38/132 (28%)

Query: 10  AGGGPG----RGSAGPPGAALREPEALPPLGGLEH--GPLRPSGGGGWSEDDAEDVTAGR 63
           A G PG    RG AGP GA     +  P   G+    GP+ P G  G   D  E   +G 
Sbjct: 735 AAGLPGPKGDRGDAGPKGA-----DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP 789

Query: 64  CFLTGAFWTGVLGT-----SPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQR 118
              TGA   G  G       P PA  AGP             PG +        QPG + 
Sbjct: 790 AGPTGA--RGAPGDRGEPGPPGPAGFAGP-------------PGADG-------QPGAKG 827

Query: 119 SRGLRAAKGDSG 130
             G   AKGD+G
Sbjct: 828 EPGDAGAKGDAG 839



 Score = 35.4 bits (80), Expect = 0.020
 Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 3   PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
           P+G + P G  G PG       RG  GPPG    + EA  P    E GP  P G  G   
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 257

Query: 54  DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ 113
                 TAG   + G      L  +   A  AGP       P     PG    RGL G +
Sbjct: 258 ------TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS-PGENGAPGQMGPRGLPG-E 309

Query: 114 PGRQRSRGLRAAKGDSG 130
            GR  + G   A+G+ G
Sbjct: 310 RGRPGAPGPAGARGNDG 326



 Score = 35.0 bits (79), Expect = 0.026
 Identities = 44/145 (30%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   P G     G+ G PG A  + +A PP      GP  P G  G         +AG
Sbjct: 810 PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAG 869

Query: 63  RCFLTGAFWTGVLGT--SPAPALGAGPCALGARLPRCPSRPGLEALRGLRG--FQPGRQR 118
               TG  + G  G    P P+  AGP       P  P   G E  +G RG     GR  
Sbjct: 870 PPGATG--FPGAAGRVGPPGPSGNAGP-------PGPPGPAGKEGGKGPRGETGPAGRPG 920

Query: 119 SRGLRAAKGDSGVGIRRKGSTRREG 143
             G     G +G     KGS   +G
Sbjct: 921 EVGPPGPPGPAG----EKGSPGADG 941



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVTA 61
           EG +   G    RG AGPPG      + +P   GL    GP  P G  G   + A  ++ 
Sbjct: 111 EGPKGDTGPRGPRGPAGPPGR-----DGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSY 165

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRG 121
           G    +    TG +   P P   +GP      LP  P  PG +  +G  G +PG   + G
Sbjct: 166 GYDEKS----TGGISV-PGPMGPSGP----RGLPGPPGAPGPQGFQGPPG-EPGEPGASG 215

Query: 122 LRAAKGDSG 130
               +G  G
Sbjct: 216 PMGPRGPPG 224



 Score = 32.0 bits (71), Expect = 0.22
 Identities = 39/128 (30%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   PAG    +G +GP G A        P    E GP  P+G  G    D +    G
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
                GA   G  G  P PA  AGP      +      PG +  RG  G  PG     G 
Sbjct: 828 EPGDAGA--KGDAG-PPGPAGPAGPPGPIGNV----GAPGAKGARGSAG-PPGATGFPGA 879

Query: 123 RAAKGDSG 130
               G  G
Sbjct: 880 AGRVGPPG 887



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 13/132 (9%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
           +G   PAG    RG+ G PG     P  LP   G   GP    G  G+   D      G 
Sbjct: 457 QGPPGPAGEEGKRGARGEPG-----PTGLPGPPGERGGP----GSRGFPGADGVAGPKGP 507

Query: 64  CFLTGAFWTGVLGTSPAPALGAGPCAL-GAR-LPRCPSRPGLEALRGLRG--FQPGRQRS 119
               G+        SP  A   G   L GA+ L   P  PG +   G  G   Q GR   
Sbjct: 508 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 567

Query: 120 RGLRAAKGDSGV 131
            G   A+G +GV
Sbjct: 568 PGPPGARGQAGV 579



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 38/121 (31%), Positives = 42/121 (34%), Gaps = 24/121 (19%)

Query: 1   MEPEGARAPAG--------GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGW 51
           M P G   P G        G PGR G  GPPG   +    LP   GL        G  G+
Sbjct: 217 MGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP--QGARGLPGTAGLP----GMKGHRGF 270

Query: 52  SEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLR 110
           S  D     AG          G  G   +P     P  +G R LP    RPG     G R
Sbjct: 271 SGLDGAKGDAGP--------AGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322

Query: 111 G 111
           G
Sbjct: 323 G 323



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
           +G   P G    RG AG  G    +  A  P    E G   P G  G +  D E    G 
Sbjct: 562 DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 621

Query: 64  CFLTG-AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
               G A   G  G + +P     P   G   P    +PG + + G  G  PG   +RG 
Sbjct: 622 PGPAGPAGERGEQGPAGSPGFQGLPGPAGP--PGEAGKPGEQGVPGDLG-APGPSGARGE 678

Query: 123 RAAKGDSGV 131
           R   G+ GV
Sbjct: 679 RGFPGERGV 687



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSED 54
            P GA  PAG     GSAG PG           L GL  GP+ P G  G + D
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGK--------DGLNGLP-GPIGPPGPRGRTGD 1173



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 37/131 (28%), Positives = 46/131 (35%), Gaps = 17/131 (12%)

Query: 3    PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDV 59
            P G   PAG     G+ GP GA     P+ +    G+    G     G  G      E  
Sbjct: 924  PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 983

Query: 60   TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
              G    +G    G  G    P L AGP          P   G E   G  G  PGR  S
Sbjct: 984  KQGPSGASGE--RGPPGPMGPPGL-AGP----------PGESGREGAPGAEG-SPGRDGS 1029

Query: 120  RGLRAAKGDSG 130
             G +  +G++G
Sbjct: 1030 PGAKGDRGETG 1040



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 35/132 (26%), Positives = 42/132 (31%), Gaps = 31/132 (23%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   P G    RG AGP G                     P G  G + +  +    G
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQG---------------------PRGDKGETGEQGDRGIKG 1109

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQPGRQR 118
                +G    G  G   +P       A G   PR P      PG + L GL    PG   
Sbjct: 1110 HRGFSGL--QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGL----PGPIG 1163

Query: 119  SRGLRAAKGDSG 130
              G R   GD+G
Sbjct: 1164 PPGPRGRTGDAG 1175


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 45/143 (31%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-HGPLRPSGGGGWSEDDAEDVTA 61
           P GAR P GG    G +GPPG  ++  +  P   GL+  GP    G  G      +    
Sbjct: 803 PPGARGPPGGQGPPGLSGPPG--IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLP 860

Query: 62  GRCFLTGA-------FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
           G     GA          G +G    P     P  +GA        PGL   +G  GF P
Sbjct: 861 GLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGA--------PGLPGEKGDHGF-P 911

Query: 115 GRQRSRGLRAAKGDSG-VGIRRK 136
           G    RG    KGD G VG+  K
Sbjct: 912 GSSGPRGDPGLKGDKGDVGLPGK 934



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 41/131 (31%), Positives = 48/131 (36%), Gaps = 38/131 (29%)

Query: 4   EGARAPAGGG--PG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           +G R P GG   PG RG  GPPG         PP     +GP  P G  G +        
Sbjct: 582 KGERGPPGGVGFPGSRGDTGPPG---------PP----GYGPAGPIGDKGQA-------- 620

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
                       G  G   +P L  GP     ++   P  PG E L G  GF PG Q  R
Sbjct: 621 ------------GFPGGPGSPGL-PGPKGEPGKIVPLPGPPGAEGLPGSPGF-PGPQGDR 666

Query: 121 GLRAAKGDSGV 131
           G     G  G+
Sbjct: 667 GFPGTPGRPGL 677



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 3   PEGARAPAG-----GGPG----RGSAGPPGAA-LREPEALPPLGGLEHGPLRPSGGGGWS 52
           PEG + P G     G PG    +G+ GPPGA+       LP + G + GP  P G  G +
Sbjct: 68  PEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPG-QDGPPGPPGIPGCN 126

Query: 53  EDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF 112
               E    G   L G  + G  G    P +   P  +   +P          L+G RGF
Sbjct: 127 GTKGERGPLGPPGLPG--FAGNPGPPGLPGMKGDPGEILGHVPGM-------LLKGERGF 177

Query: 113 Q--PGRQRSRGLRAAKGDSG 130
              PG     GL   +G  G
Sbjct: 178 PGIPGTPGPPGLPGLQGPVG 197



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 10  AGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
           A G PG G  GPPG     P+ +  L G + GP    G  G++         G+    G 
Sbjct: 683 AVGQPGIGFPGPPG-----PKGVDGLPG-DMGPPGTPGRPGFNGLPGNPGVQGQKGEPGV 736

Query: 70  FWTGVLGTSPAPALGAGPCALGA-RLPRCPSR------PGLEALRGLRGFQPGRQRSRGL 122
              G+ G    P +   P   G+  +P  P        PGL+ +RG    +PG     G 
Sbjct: 737 GLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRG----EPGPPGLPGS 792

Query: 123 RAAKGDSGVG 132
             + G  G+G
Sbjct: 793 VGSPGVPGIG 802



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 32/133 (24%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
            +G   P G    RG  G PG   ++ +A  P      G   P G                
Sbjct: 956  KGQIGPIGEKGSRGDPGTPGVPGKDGQAGQP------GQPGPKGD--------------- 994

Query: 64   CFLTGAFWTGVLGTSPAPAL-GAGPCALGARLPRCPSRPGLEALRGLRGFQ--PGRQRSR 120
                     G+ GT  AP L G      G  LP  P   G+  + G +G    PG + ++
Sbjct: 995  --------PGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAK 1046

Query: 121  GLRAAKGDSGVGI 133
            G +   G  G+GI
Sbjct: 1047 GEKGQAGPPGIGI 1059



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 24/145 (16%)

Query: 5   GARAPAGGGPGRGSAGPPG----------AALREPEALPPLGGLE----HGPLRPSGGGG 50
           GA  P G    RG  GPPG            +  P A  P GG       GP    G  G
Sbjct: 770 GAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKG 829

Query: 51  WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
           +      D+   +         G+ G S  P L   P   GA  P  P  PG +   G+ 
Sbjct: 830 FPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGL---PGQQGA--PGIPGFPGSKGEMGVM 884

Query: 111 GF-----QPGRQRSRGLRAAKGDSG 130
           G       PG   + GL   KGD G
Sbjct: 885 GTPGQPGSPGPVGAPGLPGEKGDHG 909



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 4    EGARAPAG--GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPS-----GGGGWSEDD 55
            +G+R   G  G PG+ G AG PG     P+  P + G    P  P      GG G     
Sbjct: 965  KGSRGDPGTPGVPGKDGQAGQPGQP--GPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTP 1022

Query: 56   AEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-- 113
             E    G           + G   +P L     A G +    P   G+  LRG +G Q  
Sbjct: 1023 GEKGVPG-----------IPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGI 1071

Query: 114  PGRQRSRGLRAAKGDSGV 131
             G   S G +  KG  G+
Sbjct: 1072 AGFPGSPGEKGEKGSIGI 1089



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 30/134 (22%)

Query: 12   GGPGRGSAGPPGA----ALREPEALPPLGGLE-----------HGPLRPSGGGGWSEDDA 56
            G PGRG  G PGA      +     P L G              GP  P G  G      
Sbjct: 1169 GLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPG 1228

Query: 57   EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
                  +         G  G    P L   P  +G      P  PG++ ++G +G  PG 
Sbjct: 1229 HATEGPK---------GDRGPQGQPGLPGLPGPMGP-----PGLPGIDGVKGDKG-NPGW 1273

Query: 117  QRSRGLRAAKGDSG 130
              + G+   KGD G
Sbjct: 1274 PGAPGVPGPKGDPG 1287


>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
          Length = 711

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 27/57 (47%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 3  PEGARAPAGGGPGRGSAG------PPGAALRE---PEALPPLGGLEHGPLRPSGGGG 50
          P G   PAGGG G G AG      PPGA  R    P    P GG   GP +P GGGG
Sbjct: 10 PPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGG 66


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 33/147 (22%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           M P G   PAG    +G  G PG    EP    P+     GP  P G  G   DD E   
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEP-GEPGVSGPM-----GPRGPPGPPGKPGDDGEAGK 259

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
            G+    G          P P         GAR    P  PGL  ++G RG+        
Sbjct: 260 PGKAGERG---------PPGPQ--------GAR--GFPGTPGLPGVKGHRGYP------- 293

Query: 121 GLRAAKGDSGV-GIRRKGSTRREGWTP 146
           GL  AKG++G  G++ +  +  E  +P
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGENGSP 320



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 48/149 (32%), Positives = 59/149 (39%), Gaps = 23/149 (15%)

Query: 3    PEGARAPAG-GGP--GRGSAGPPGAA----LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
            P G   P+G  GP   RG +GPPG A    L+ P A PP    E G   PSG  G     
Sbjct: 916  PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQ 974

Query: 56   AEDVTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCP----------SRP 101
                  G   L G      + G+ G S  P     P A G R P  P            P
Sbjct: 975  GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034

Query: 102  GLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
            G E   G  G  PGR  + G++  +G++G
Sbjct: 1035 GREGSPGADG-PPGRDGAAGVKGDRGETG 1062



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 3   PEGARAPAG--GGPG-------------RGSAGPPGAALREPEALPPLGGLEHGPLRPSG 47
           P GA  P G  G PG             RG  GPPG    + EA  P    E GP  P G
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 273

Query: 48  GGGWSEDDAEDVTAGRCFLTG-------AFWTGVLGTSPAPALGAGPCALGAR-LPRCPS 99
             G+          G     G       A   GV G S +P     P  +G R LP    
Sbjct: 274 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 333

Query: 100 RPGLEALRGLRG--FQPG 115
           R G     G RG   QPG
Sbjct: 334 RTGPAGAAGARGNDGQPG 351



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 26/138 (18%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
           G   PAG    RG+ G PG       A PP      GP+ P+GG G+         AG  
Sbjct: 333 GRTGPAGAAGARGNDGQPG------PAGPP------GPVGPAGGPGFPGAPGAKGEAGPT 380

Query: 65  FLTGAFWTGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLEALRGLRGF----- 112
              G    G  G    P     P   GA        +P      G   + G  GF     
Sbjct: 381 GARGP--EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438

Query: 113 QPGRQRSRGLRAAKGDSG 130
            PG Q + G    KG +G
Sbjct: 439 PPGPQGATGPLGPKGQTG 456



 Score = 37.0 bits (84), Expect = 0.007
 Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 12/139 (8%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G + P G    +G  G PG   R+ E   P      GP  P G  G   + A  +  G
Sbjct: 127 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG 186

Query: 63  RCFLTGAFWTGVL---------GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-- 111
                G    GV+            P PA   GP       P  P  PG+    G RG  
Sbjct: 187 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN-PGEPGEPGVSGPMGPRGPP 245

Query: 112 FQPGRQRSRGLRAAKGDSG 130
             PG+    G     G +G
Sbjct: 246 GPPGKPGDDGEAGKPGKAG 264



 Score = 35.0 bits (79), Expect = 0.026
 Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   PAG    +G  GPPG A        P    E GP  P+G  G    D +    G
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 849

Query: 63  RCFLTG----AFWTGVLGTSPAPALGAGPCAL----GARLPRCPSRPGLEALRGLRG--- 111
                G    A   G  G S AP    GP  +    GAR  + P  PG     G  G   
Sbjct: 850 EQGEAGQKGDAGAPGPQGPSGAPG-PQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVG 906

Query: 112 -----------FQPGRQRSRGLRAAKGDSG 130
                        PG     G + A+GDSG
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 936



 Score = 34.3 bits (77), Expect = 0.044
 Identities = 44/159 (27%), Positives = 57/159 (35%), Gaps = 38/159 (23%)

Query: 3   PEGARAPAGGGPGRGSAGPPG-----------------AALREP-----EALPPLGGL-- 38
           P+G   P+G     G  GPPG                  A  EP     + LP   GL  
Sbjct: 571 PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 630

Query: 39  ------EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGA 92
                 E G   P G  G + +  E    G      + + G+ G    P  G  P   G 
Sbjct: 631 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKPGDQG- 684

Query: 93  RLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
            +P     PGL   RG RGF PG + S G +  +G  G+
Sbjct: 685 -VPGEAGAPGLVGPRGERGF-PGERGSPGAQGLQGPRGL 721



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 39/133 (29%), Positives = 45/133 (33%), Gaps = 33/133 (24%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+GA  PAG    RG+ G PG                 GP+ P G  G           G
Sbjct: 478 PQGAPGPAGEEGKRGARGEPGGV---------------GPIGPPGERG---------APG 513

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
                G    G+ G   AP    GP  L         P  P  PGL   RGL G +PG  
Sbjct: 514 NRGFPGQ--DGLAGPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG-RPGDA 569

Query: 118 RSRGLRAAKGDSG 130
             +G     G  G
Sbjct: 570 GPQGKVGPSGAPG 582



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P GAR P G    RG  G PG+                GP   SG  G         +AG
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSP---------------GPAGASGNPGTDGIPGAKGSAG 423

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ----- 113
                     G+ G    P     P   GA  P  P      PG+   +G +G +     
Sbjct: 424 A--------PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 475

Query: 114 ------PGRQRSRGLRAAKGDSG 130
                 PG     G R A+G+ G
Sbjct: 476 AGPQGAPGPAGEEGKRGARGEPG 498



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           PEGA    GG    G  GPPG A    E        E GP  P+G  G      E    G
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEK------GEVGPPGPAGSAGARGAPGERGETG 828

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQ 117
                           P PA  AGP       P    +PG +  +G  G +     PG Q
Sbjct: 829 ---------------PPGPAGFAGP-------PGADGQPGAKGEQGEAGQKGDAGAPGPQ 866

Query: 118 RSRGLRAAKGDSGV 131
              G    +G +GV
Sbjct: 867 GPSGAPGPQGPTGV 880



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 46/160 (28%), Positives = 54/160 (33%), Gaps = 42/160 (26%)

Query: 3   PEGARAPAG-----GGPG----------------RGSAGPPGAA----LREPEALP-PLG 36
           PEGA+ P G     G PG                +GSAG PG A       P   P P G
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444

Query: 37  GLEHGPLRPSGG------GGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCAL 90
               GPL P G        G+  +       G     GA   G  G          P  +
Sbjct: 445 AT--GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA--PGPAGEEGKRGARGEPGGV 500

Query: 91  GARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           G   P     PG     G RGF PG+    G + A G+ G
Sbjct: 501 GPIGP-----PGERGAPGNRGF-PGQDGLAGPKGAPGERG 534


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 33/147 (22%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           M P G   PAG    +G  G PG    EP    P+     GP  P G  G   DD E   
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEP-GEPGVSGPM-----GPRGPPGPPGKPGDDGEAGK 190

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSR 120
            G+    G          P P         GAR    P  PGL  ++G RG+        
Sbjct: 191 PGKAGERG---------PPGPQ--------GAR--GFPGTPGLPGVKGHRGYP------- 224

Query: 121 GLRAAKGDSGV-GIRRKGSTRREGWTP 146
           GL  AKG++G  G++ +  +  E  +P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGSP 251



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 48/149 (32%), Positives = 59/149 (39%), Gaps = 23/149 (15%)

Query: 3   PEGARAPAG-GGP--GRGSAGPPGAA----LREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
           P G   P+G  GP   RG +GPPG A    L+ P A PP    E G   PSG  G     
Sbjct: 847 PPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP-AGPPGEKGEPGDDGPSGAEGPPGPQ 905

Query: 56  AEDVTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCP----------SRP 101
                 G   L G      + G+ G S  P     P A G R P  P            P
Sbjct: 906 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965

Query: 102 GLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           G E   G  G  PGR  + G++  +G++G
Sbjct: 966 GREGSPGADG-PPGRDGAAGVKGDRGETG 993



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 3   PEGARAPAG--GGPG-------------RGSAGPPGAALREPEALPPLGGLEHGPLRPSG 47
           P GA  P G  G PG             RG  GPPG    + EA  P    E GP  P G
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 204

Query: 48  GGGWSEDDAEDVTAGRCFLTG-------AFWTGVLGTSPAPALGAGPCALGAR-LPRCPS 99
             G+          G     G       A   GV G S +P     P  +G R LP    
Sbjct: 205 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 264

Query: 100 RPGLEALRGLRG--FQPG 115
           R G     G RG   QPG
Sbjct: 265 RTGPAGAAGARGNDGQPG 282



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 26/138 (18%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
           G   PAG    RG+ G PG       A PP      GP+ P+GG G+         AG  
Sbjct: 264 GRTGPAGAAGARGNDGQPG------PAGPP------GPVGPAGGPGFPGAPGAKGEAGPT 311

Query: 65  FLTGAFWTGVLGTSPAPALGAGPCALGAR-------LPRCPSRPGLEALRGLRGF----- 112
              G    G  G    P     P   GA        +P      G   + G  GF     
Sbjct: 312 GARGP--EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369

Query: 113 QPGRQRSRGLRAAKGDSG 130
            PG Q + G    KG +G
Sbjct: 370 PPGPQGATGPLGPKGQTG 387



 Score = 37.0 bits (84), Expect = 0.007
 Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 12/139 (8%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G + P G    +G  G PG   R+ E   P      GP  P G  G   + A  +  G
Sbjct: 58  PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG 117

Query: 63  RCFLTGAFWTGVL---------GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-- 111
                G    GV+            P PA   GP       P  P  PG+    G RG  
Sbjct: 118 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN-PGEPGEPGVSGPMGPRGPP 176

Query: 112 FQPGRQRSRGLRAAKGDSG 130
             PG+    G     G +G
Sbjct: 177 GPPGKPGDDGEAGKPGKAG 195



 Score = 35.0 bits (79), Expect = 0.026
 Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   PAG    +G  GPPG A        P    E GP  P+G  G    D +    G
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG 780

Query: 63  RCFLTG----AFWTGVLGTSPAPALGAGPCAL----GARLPRCPSRPGLEALRGLRG--- 111
                G    A   G  G S AP    GP  +    GAR  + P  PG     G  G   
Sbjct: 781 EQGEAGQKGDAGAPGPQGPSGAPG-PQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVG 837

Query: 112 -----------FQPGRQRSRGLRAAKGDSG 130
                        PG     G + A+GDSG
Sbjct: 838 PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 867



 Score = 34.3 bits (77), Expect = 0.044
 Identities = 44/159 (27%), Positives = 57/159 (35%), Gaps = 38/159 (23%)

Query: 3   PEGARAPAGGGPGRGSAGPPG-----------------AALREP-----EALPPLGGL-- 38
           P+G   P+G     G  GPPG                  A  EP     + LP   GL  
Sbjct: 502 PQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 561

Query: 39  ------EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGA 92
                 E G   P G  G + +  E    G      + + G+ G    P  G  P   G 
Sbjct: 562 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-----PSGFQGLPGPPGPPGEGGKPGDQG- 615

Query: 93  RLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
            +P     PGL   RG RGF PG + S G +  +G  G+
Sbjct: 616 -VPGEAGAPGLVGPRGERGF-PGERGSPGAQGLQGPRGL 652



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 39/133 (29%), Positives = 45/133 (33%), Gaps = 33/133 (24%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+GA  PAG    RG+ G PG                 GP+ P G  G           G
Sbjct: 409 PQGAPGPAGEEGKRGARGEPGGV---------------GPIGPPGERG---------APG 444

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
                G    G+ G   AP    GP  L         P  P  PGL   RGL G +PG  
Sbjct: 445 NRGFPGQ--DGLAGPKGAPG-ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG-RPGDA 500

Query: 118 RSRGLRAAKGDSG 130
             +G     G  G
Sbjct: 501 GPQGKVGPSGAPG 513



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P GAR P G    RG  G PG+                GP   SG  G         +AG
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSP---------------GPAGASGNPGTDGIPGAKGSAG 354

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ----- 113
                     G+ G    P     P   GA  P  P      PG+   +G +G +     
Sbjct: 355 A--------PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 406

Query: 114 ------PGRQRSRGLRAAKGDSG 130
                 PG     G R A+G+ G
Sbjct: 407 AGPQGAPGPAGEEGKRGARGEPG 429



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           PEGA    GG    G  GPPG A    E        E GP  P+G  G      E    G
Sbjct: 706 PEGAPGKDGGRGLTGPIGPPGPAGANGEK------GEVGPPGPAGSAGARGAPGERGETG 759

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQ 117
                           P PA  AGP       P    +PG +  +G  G +     PG Q
Sbjct: 760 ---------------PPGPAGFAGP-------PGADGQPGAKGEQGEAGQKGDAGAPGPQ 797

Query: 118 RSRGLRAAKGDSGV 131
              G    +G +GV
Sbjct: 798 GPSGAPGPQGPTGV 811



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 46/160 (28%), Positives = 54/160 (33%), Gaps = 42/160 (26%)

Query: 3   PEGARAPAG-----GGPG----------------RGSAGPPGAA----LREPEALP-PLG 36
           PEGA+ P G     G PG                +GSAG PG A       P   P P G
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 375

Query: 37  GLEHGPLRPSGG------GGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCAL 90
               GPL P G        G+  +       G     GA   G  G          P  +
Sbjct: 376 AT--GPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGA--PGPAGEEGKRGARGEPGGV 431

Query: 91  GARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           G   P     PG     G RGF PG+    G + A G+ G
Sbjct: 432 GPIGP-----PGERGAPGNRGF-PGQDGLAGPKGAPGERG 465


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 43/136 (31%), Positives = 49/136 (36%), Gaps = 24/136 (17%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
            +G R P G   G G  GPPGA        P L     GP  P G  G   +  E    GR
Sbjct: 2170 QGPRGPPGPVGGHGDPGPPGA--------PGLA----GPAGPQGPSGLKGEPGETGPPGR 2217

Query: 64   CFL--TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
                 TGA         +G++G   +P L       G   P  P R G     G RG  P
Sbjct: 2218 GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGK--PGAPGRDGASGKDGDRG-SP 2274

Query: 115  GRQRSRGLRAAKGDSG 130
            G   S GL    G  G
Sbjct: 2275 GVPGSPGLPGPVGPKG 2290



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 35/132 (26%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G     G    RG AGPPG      E +P       GPL P G              G
Sbjct: 2411 PRGEMGQPGPSGERGLAGPPGR-----EGIP-------GPLGPPG------------PPG 2446

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGAR----LPRCPSRPGLEALRGLRGFQPGRQR 118
                 GA  +G+ G    P +G  P   G R    +     RPG E  RGL G  PG   
Sbjct: 2447 SVGPPGA--SGLKGDKGDPGVGL-PGPRGERGEPGIRGEDGRPGQEGPRGLTG-PPG--- 2499

Query: 119  SRGLRAAKGDSG 130
            SRG R  KGD G
Sbjct: 2500 SRGERGEKGDVG 2511



 Score = 35.4 bits (80), Expect = 0.020
 Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G R P G    RG  G PG A++  +        E GP  P  GG         +  G
Sbjct: 1375 PPGPRGPLGDPGPRGPPGLPGTAMKGDKG----DRGERGPPGPGEGG---------IAPG 1421

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
               L G      L  SP P    GP   G +  +  S  G   L G  G  PG Q  RG 
Sbjct: 1422 EPGLPG------LPGSPGPQGPVGP--PGKKGEKGDSEDGAPGLPGQPG-SPGEQGPRGP 1472

Query: 123  RAAKGDSG 130
              A G  G
Sbjct: 1473 PGAIGPKG 1480



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 42/151 (27%), Positives = 51/151 (33%), Gaps = 26/151 (17%)

Query: 5    GARAPAGGGPGRGSAGPPG----AALREPEALPPLGGLEHGPLRP--------SGGGGWS 52
            GA  P+G     G AG PG      LR  + LP   G    P +P        +G  G  
Sbjct: 1788 GAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEP 1847

Query: 53   EDDAEDVTAGRCFLTGAFW-------------TGVLGTSPAPALGAGPCALGARLPRCPS 99
             D  ED   G    +GA                G+LG    P L       G   P  P 
Sbjct: 1848 GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPG 1907

Query: 100  RPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
              G +  RG  G   G Q   G R  +G+ G
Sbjct: 1908 GTGPKGDRGETG-SKGEQGLPGERGLRGEPG 1937



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 39/149 (26%), Positives = 52/149 (34%), Gaps = 23/149 (15%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVT 60
            P G + P+G     G  GPPG  L  P     L G     G + P G  G      E   
Sbjct: 2196 PAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGK 2255

Query: 61   AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRP---------GLEALRGLRG 111
             G     GA  +G  G   +P +   P   G   P+    P         GL   +G +G
Sbjct: 2256 PGAPGRDGA--SGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKG 2313

Query: 112  F----------QPGRQRSRGLRAAKGDSG 130
                       +PG +  RGL   +G+ G
Sbjct: 2314 APGGLAGDLVGEPGAKGDRGLPGPRGEKG 2342



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL--------EHGPLRPSGGGGWSED 54
            P G+  P G    +G  G PG  L  P       G+        + GP   +G  G   +
Sbjct: 2444 PPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGE 2503

Query: 55   DAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG--F 112
              E    G   L G      +   P    GA    +G R PR     GL+  +G RG   
Sbjct: 2504 RGEKGDVGSAGLKGDKGDSAVILGPPGPRGA-KGDMGERGPR-----GLDGDKGPRGDNG 2557

Query: 113  QPGRQRSRGLRAAKGDSGV-GIR 134
             PG + S+G    KG +G+ G+R
Sbjct: 2558 DPGDKGSKGEPGDKGSAGLPGLR 2580



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 39/129 (30%), Positives = 50/129 (38%), Gaps = 18/129 (13%)

Query: 4    EGARAPAGGGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            +G  A   G PG RG+ G  G   R P  L      + GP   +G  G      E    G
Sbjct: 2519 KGDSAVILGPPGPRGAKGDMGE--RGPRGLDG----DKGPRGDNGDPGDKGSKGEPGDKG 2572

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
               L G    G+LG    P          A +P  P  PG + + G+RG + G     G 
Sbjct: 2573 SAGLPGL--RGLLGPQGQPG--------AAGIPGDPGSPGKDGVPGIRG-EKGDVGFMGP 2621

Query: 123  RAAKGDSGV 131
            R  KG+ GV
Sbjct: 2622 RGLKGERGV 2630



 Score = 32.0 bits (71), Expect = 0.22
 Identities = 42/140 (30%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGG------GWSEDDA 56
            P+G +   G    RG  GPPG        LP   G   GP  P G        G+   D 
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPG-----DPGLPGRTGAP-GPQGPPGSATAKGERGFPGADG 1305

Query: 57   EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
               + GR         G  GT  AP L   P   G R       PG    RG +G +PG 
Sbjct: 1306 RPGSPGR--------AGNPGTPGAPGLKGSPGLPGPR-----GDPGERGPRGPKG-EPGA 1351

Query: 117  Q------RSRGLRAAKGDSG 130
                      GL   KGD G
Sbjct: 1352 PGQVIGGEGPGLPGRKGDPG 1371



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 40/137 (29%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 5    GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRP--------SGGGGWSEDDA 56
            G R   G     G  GPPG AL E    P   GL   P +P        +GG G +    
Sbjct: 2000 GERGLKGDRGDPGPQGPPGLALGE-RGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPG 2058

Query: 57   EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ--P 114
            E    G     G    G  G    P     P   G ++      PGL   +G  G +   
Sbjct: 2059 ERGERGEKGERGE--QGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAK 2116

Query: 115  GRQRSRGLRAAKGDSGV 131
            G   S G +  KGD GV
Sbjct: 2117 GEPGSNGDQGPKGDRGV 2133



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 47/152 (30%), Positives = 52/152 (34%), Gaps = 28/152 (18%)

Query: 3    PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGL--EHGPLRPSGGGGW 51
            P GA  P G  G PG       +G  GPPG A      LP + G     GP  P G  G 
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPA--GSRGLPGVAGRPGAKGPEGPPGPTGR 1529

Query: 52   SEDDAEDVTAGRCFLTGAFWTGVLG----TSPAPALGA-------GPCALGARLPRCPSR 100
              +  E    G   + G    G  G      PA   GA       GP   G  LP  P  
Sbjct: 1530 QGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGP--PGLVLPGDPGP 1587

Query: 101  PGLEALRGLRGF--QPGRQRSRGLRAAKGDSG 130
             G    RG  G   + G     G    KGD G
Sbjct: 1588 KGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPG 1619



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
            +G   P G     G  GPPG  +   E  P L G E GP    G  G    + +    G 
Sbjct: 2072 QGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSG-EQGPPGLKGAKGEPGSNGDQGPKGD 2130

Query: 64   CFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCP-SRPGLEALRGLRG-----FQPGRQ 117
              + G    G  G          P   G R    P  +PGL+  RG  G       PG  
Sbjct: 2131 RGVPGI--KGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPP 2188

Query: 118  RSRGLRAAKGDSG 130
             + GL    G  G
Sbjct: 2189 GAPGLAGPAGPQG 2201



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 44/152 (28%), Positives = 51/152 (33%), Gaps = 28/152 (18%)

Query: 3    PEGARAPAGGGPGRGSAGPPG-AALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
            PEG   P G    +G  G PG  A+  P    P G  E G + P+G  G +    E    
Sbjct: 1520 PEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKG--EKGDVGPAGPRGATGVQGERGPP 1577

Query: 62   GRCF-----------------LTGAFWTGVLGTSPAPALGAGPCALGARLPRCP-SRPGL 103
            G                    LTG    G  G S  P     P   G   P  P  R G 
Sbjct: 1578 GLVLPGDPGPKGDPGDRGPIGLTGR--AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGE 1635

Query: 104  EALRGLRGFQ-----PGRQRSRGLRAAKGDSG 130
               +G  G       PG+   RGLR A G  G
Sbjct: 1636 VGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG 1667


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 43/137 (31%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 3   PEGARAPAG--GGPG-------RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
           P+G + PAG  G PG       RG AGPPG A  +     P    E G + P G  G+  
Sbjct: 110 PQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPG 169

Query: 54  DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ 113
                   G     G    G+ G   AP +   P A G         PG    RGL G +
Sbjct: 170 TPGLPGFKGIRGHNGL--DGLKGQPGAPGVKGEPGAPGEN-----GTPGQTGARGLPG-E 221

Query: 114 PGRQRSRGLRAAKGDSG 130
            GR  + G   A+G  G
Sbjct: 222 RGRVGAPGPAGARGSDG 238



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   PAG    RG  GP G        + P G +  GP  PSG  G   D  E    G
Sbjct: 965  PHGPVGPAGKHGNRGETGPSGP-------VGPAGAV--GPRGPSGPQGIRGDKGEPGEKG 1015

Query: 63   RCFLTGAFWTGVLGTSPAPALGA------GPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
               L G    G  G    P +         P ++G   PR P+ P   A +  R   PG 
Sbjct: 1016 PRGLPGL--KGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGT 1073

Query: 117  QRSRGLRAAKGDSG 130
                G+R  +G  G
Sbjct: 1074 VGPAGIRGPQGHQG 1087



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 45/132 (34%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 5   GARAPAG--GGPGR----GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAED 58
           G   PAG  G PG     G  G PG A    E  PP      GP  P G  G S     D
Sbjct: 559 GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD 618

Query: 59  VTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQR 118
              G   + GA   G  G S    L     A G  +P      G   LRG  G  PGR  
Sbjct: 619 GNKGEPGVVGA--VGTAGPSGPSGLPGERGAAG--IPGGKGEKGEPGLRGEIG-NPGRDG 673

Query: 119 SRGLRAAKGDSG 130
           +RG   A G  G
Sbjct: 674 ARGAPGAVGAPG 685



 Score = 38.9 bits (89), Expect = 0.002
 Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 29/129 (22%)

Query: 7   RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
           + PAG    RG  GPPG         PP    E GP  P G  G           G   L
Sbjct: 32  KGPAGDRGPRGERGPPG---------PPGRDGEDGPTGPPGPPG---------PPGPPGL 73

Query: 67  TGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-----PGRQRSRG 121
            G F     G      +G GP  +G   PR P  PG     G +GFQ     PG     G
Sbjct: 74  GGNFAAQYDG----KGVGLGPGPMGLMGPRGP--PGAAGAPGPQGFQGPAGEPGEPGQTG 127

Query: 122 LRAAKGDSG 130
              A+G +G
Sbjct: 128 PAGARGPAG 136



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL----EHGPLRPSGGGGWSEDDAEDV 59
           +G+  P G     GSAGPPG     P A  P G +      GP  P+G  G         
Sbjct: 237 DGSVGPVGPAGPIGSAGPPGF----PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSG 292

Query: 60  TAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQ 117
             G     GA   TG  G +  P +   P   G R +P      G    RGL G +PG  
Sbjct: 293 PVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG-EPGPA 351

Query: 118 RSRGLRAAKGDSG 130
            S+G    KG+ G
Sbjct: 352 GSKGESGNKGEPG 364



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 45/140 (32%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 3   PEGARAPAG--GGPG----RGSAGP------PGAALREPEALPPLGGLEHGPLRPSGGGG 50
           P GA  PAG  G PG    RG  GP      PGAA R     P       GP  P+G  G
Sbjct: 758 PVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEG 817

Query: 51  WSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
                 +    GR    GA           P+  AG     A  P  P   GL    G+ 
Sbjct: 818 LRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGT----AGPPGTPGPQGLLGAPGIL 873

Query: 111 GFQPGRQRSRGLRAAKGDSG 130
           G  PG +  RGL    G  G
Sbjct: 874 GL-PGSRGERGLPGVAGAVG 892



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 46/157 (29%), Positives = 60/157 (38%), Gaps = 58/157 (36%)

Query: 3    PEGARAPAG--------GGPGR-------GSAGPPG--------AALREPEALPPLGGL- 38
            P GAR P G        G PG        G+ GPPG             P  + P+G   
Sbjct: 902  PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAG 961

Query: 39   ---EHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLG-TSPAPALGAGPCALGARL 94
                HGP+ P+G  G   +                 TG  G   PA A+G          
Sbjct: 962  APGPHGPVGPAGKHGNRGE-----------------TGPSGPVGPAGAVG---------- 994

Query: 95   PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
            PR PS P  + +RG +G +PG +  RGL   KG +G+
Sbjct: 995  PRGPSGP--QGIRGDKG-EPGEKGPRGLPGLKGHNGL 1028



 Score = 35.4 bits (80), Expect = 0.020
 Identities = 51/161 (31%), Positives = 61/161 (37%), Gaps = 40/161 (24%)

Query: 5   GARAPAGGGPGRGSAGPPG--AALREPEALPPLGGLEHGPLRPSG-----------GGGW 51
           GA  P G    RG +GPPG      EP  +  +G    GP  PSG           GG  
Sbjct: 598 GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA--GPSGPSGLPGERGAAGIPGGKG 655

Query: 52  SEDD----AEDVTAGRCFLTGAFWTGVLGT-SPAPALG-------AGPCALGARLPR-CP 98
            + +     E    GR    GA   G +G   PA A G       AGP   G   PR  P
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGA--PGAVGAPGPAGATGDRGEAGAAGPA--GPAGPRGSP 711

Query: 99  SRPGLEALRGLRGF--------QPGRQRSRGLRAAKGDSGV 131
              G     G  GF        QPG +  RG +  KG++GV
Sbjct: 712 GERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGV 752



 Score = 34.3 bits (77), Expect = 0.044
 Identities = 43/135 (31%), Positives = 48/135 (35%), Gaps = 15/135 (11%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAED 58
           EG R P G     G  GPPG  LR       L G +      GP    G  G +     +
Sbjct: 378 EGKRGPNGEAGSAGPPGPPG--LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPN 435

Query: 59  VTAGRCFLTGAFWTGVLGTSP---APALGAGPCALGARLPRCPSRPGLEALRGLRGFQPG 115
             AGR    G      L  SP    PA   GP      LP    RPG     G RG +PG
Sbjct: 436 GDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVG----LPGIDGRPGPIGPAGARG-EPG 490

Query: 116 RQRSRGLRAAKGDSG 130
                G +   GD G
Sbjct: 491 NIGFPGPKGPTGDPG 505



 Score = 34.3 bits (77), Expect = 0.044
 Identities = 43/136 (31%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 5   GARAPAG-----GGPGR----GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDD 55
           GA  PAG     G PG     G AGP G A     A  P    E G   P G  G     
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPT 756

Query: 56  AEDVTAGRCFLTGAFW-TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
                AG     G     G  G    P +   P A G   P     PG   + G  G  P
Sbjct: 757 GPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGP-----PGPSGISGPPG-PP 810

Query: 115 GRQRSRGLRAAKGDSG 130
           G     GLR  +GD G
Sbjct: 811 GPAGKEGLRGPRGDQG 826



 Score = 34.3 bits (77), Expect = 0.044
 Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 29/143 (20%)

Query: 3   PEGARAPAG--GGPG----RGSAGPPGAALREPEALPPLGGL-EHGPLRPSGGGGWSEDD 55
           P G   PAG  G PG    RG+ GP G    E   + P G +   GP  P+G  G +   
Sbjct: 722 PNGFAGPAGAAGQPGAKGERGAKGPKG----ENGVVGPTGPVGAAGPAGPNGPPGPAGSR 777

Query: 56  AEDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQ-- 113
            +    G     GA   G  G  P P+  +GP       P  P   G E LRG RG Q  
Sbjct: 778 GDGGPPGMTGFPGA--AGRTG-PPGPSGISGP-------PGPPGPAGKEGLRGPRGDQGP 827

Query: 114 ------PGRQRSRGLRAAKGDSG 130
                  G     G    KG SG
Sbjct: 828 VGRTGEVGAVGPPGFAGEKGPSG 850



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 43/155 (27%), Positives = 57/155 (36%), Gaps = 27/155 (17%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
           +G   P G   G+G  GPPG     P     L G       PSG  G      E    G 
Sbjct: 531 QGPPGPQGVQGGKGEQGPPG-----PPGFQGLPG-------PSGPAGEVGKPGERGLHGE 578

Query: 64  CFLTGAFWTGVLGTSPAPALGAGPCA-LGARLPRCP-------SRPGLEALRGLRGFQ-- 113
             L G          P  +  AGP   +G+R P  P         PG+    G  G    
Sbjct: 579 FGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP 638

Query: 114 ---PGRQRSRGLRAAKGDSG-VGIRRK-GSTRREG 143
              PG + + G+   KG+ G  G+R + G+  R+G
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDG 673



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 26/134 (19%)

Query: 3   PEGARAPAG--GGPG-RGSAGPPGAALREPEAL---PPLGGLEHGPLRPSGGGGWSEDDA 56
           P G   P G  G  G RG  G PG A  + E+     P      GP  PSG  G    + 
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNG 385

Query: 57  EDVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGR 116
           E               G  G    P L   P + G  LP    R G+    G R    G 
Sbjct: 386 E--------------AGSAGPPGPPGLRGSPGSRG--LPGADGRAGVMGPPGSR----GA 425

Query: 117 QRSRGLRAAKGDSG 130
               G+R   GD+G
Sbjct: 426 SGPAGVRGPNGDAG 439


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 22/129 (17%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G R P G    +G AGP G    EP    P+G +  G   P G  G   +D E    G
Sbjct: 217 PVGPRGPQGLQGQQGGAGPTGPP-GEPGDPGPMGPI--GSRGPEGPPGKPGEDGEPGRNG 273

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSRG 121
                     G +G + +P         GAR  P  P  PGL+  RG +G + G +   G
Sbjct: 274 N--------PGEVGFAGSP---------GARGFPGAPGLPGLKGHRGHKGLE-GPKGEVG 315

Query: 122 LRAAKGDSG 130
              +KG++G
Sbjct: 316 APGSKGEAG 324



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 38/133 (28%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-----EHGPLRPSGGGGWSEDDAE 57
           P GAR P G    RG  GPPG     P   P L G        G   P+G  G S     
Sbjct: 391 PTGARGPEGPQGQRGETGPPG-----PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS 445

Query: 58  DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQ 117
               G               SP P    GP  +  + P  P  PG +   G +G +PG  
Sbjct: 446 AGPPG---------------SPGPQGSTGPQGIRGQ-PGDPGVPGFKGEAGPKG-EPGPH 488

Query: 118 RSRGLRAAKGDSG 130
             +G     G+ G
Sbjct: 489 GIQGPIGPPGEEG 501



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G     G   GRG+ GPPGA        P   G   GP  P+G  G +    E    G
Sbjct: 886  PHGPNGVPGLKGGRGTQGPPGAT-----GFPGSAG-RVGPPGPAGAPGPAGPLGEPGKEG 939

Query: 63   RCFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRP-GLEALRGLRGFQP 114
               L G   +       G  G    P     P   G   P  P  P G    RG+ G  P
Sbjct: 940  PPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVG-MP 998

Query: 115  GRQRSRGLRAAKGDSG 130
            G++  RG+    G +G
Sbjct: 999  GQRGERGMPGLPGPAG 1014



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 40/128 (31%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+G +   G     G  GPPG      + +P   G+   P      GG  E  AE  TAG
Sbjct: 739 PDGPKGSPGPSGTPGDTGPPGL-----QGMPGERGIAGTPGPKGDRGGIGEKGAEG-TAG 792

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
                G    G LG  P P   AGP          P   GL    G RG  PG +   G 
Sbjct: 793 NDGARGL--PGPLG-PPGP---AGPTGEKGE----PGPRGLVGPPGSRG-NPGSRGENGP 841

Query: 123 RAAKGDSG 130
             A G +G
Sbjct: 842 TGAVGFAG 849



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 42/127 (33%), Positives = 45/127 (35%), Gaps = 44/127 (34%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
           +G R P G    +GS G PG    EP  LP   GL   P                     
Sbjct: 542 QGERGPVGSSGPKGSQGDPGRP-GEP-GLPGARGLTGNP--------------------- 578

Query: 64  CFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR 123
                    GV G  P   LG     LGA  P    RPG     G+RG QPG   S GL 
Sbjct: 579 ---------GVQG--PEGKLG----PLGA--PGEDGRPGPPGSIGIRG-QPG---SMGLP 617

Query: 124 AAKGDSG 130
             KG SG
Sbjct: 618 GPKGSSG 624



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 14/131 (10%)

Query: 3   PEGARAPAGGGPGRGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
           PEG   P G     G  GPPG+  +R           + G +   G  G S D  +   A
Sbjct: 583 PEGKLGPLGAPGEDGRPGPPGSIGIRG----------QPGSMGLPGPKGSSGDPGKPGEA 632

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCAL-GARLPRCPSRP-GLEALRGLRGFQPGRQRS 119
           G   + G            P+   GP  L G R  + P  P G + L G  G  PG    
Sbjct: 633 GNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPG-PPGEGGK 691

Query: 120 RGLRAAKGDSG 130
            G +   GD G
Sbjct: 692 PGDQGVPGDPG 702



 Score = 27.3 bits (59), Expect = 5.4
 Identities = 51/159 (32%), Positives = 57/159 (35%), Gaps = 36/159 (22%)

Query: 1   MEPEGARAPAG--------GGPGR-------GSAGPPGAALREPEALPPLGGLE-----H 40
           M P G+R P G        G PGR       G AG PGA  R     P L GL+      
Sbjct: 248 MGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA--RGFPGAPGLPGLKGHRGHK 305

Query: 41  GPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPA----LG--AGPCALGAR- 93
           G   P G  G      E   AG     GA   G LG    P     LG    P   GA  
Sbjct: 306 GLEGPKGEVGAPGSKGE---AGPTGPMGAM--GPLGPRGMPGERGRLGPQGAPGQRGAHG 360

Query: 94  LPRCPSRPGLEALRGLRGF--QPGRQRSRGLRAAKGDSG 130
           +P  P   G   + G  GF   PG +   G   A+G  G
Sbjct: 361 MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEG 399



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 3    PEGARAPAG--GGPGR-GSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
            P G   P+G  G PG  G  GPPG      EA P     E GP  P G  G
Sbjct: 1177 PPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPG 1227


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 18/118 (15%)

Query: 20  GPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTG------ 73
           GPPG     P+ LP L G   GP  P G  G           G     GA  T       
Sbjct: 823 GPPG-----PDGLPGLPGFP-GPRGPKGDTGLPGFPGLKGEQGEKGEPGAILTEDIPLER 876

Query: 74  VLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGV 131
           ++G    P +   P  +G + P     PG +   GL G +PGR    GL+  KGD GV
Sbjct: 877 LMGKKGEPGMHGAPGPMGPKGP-----PGHKGEFGLPG-RPGRPGLNGLKGTKGDPGV 928



 Score = 27.3 bits (59), Expect = 5.4
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 4   EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
           +GAR P G     G PG RG  GPPG   ++ +A PP      GP  P G  G
Sbjct: 681 KGARGPNGSVGEKGDPGNRGLPGPPG---KKGQAGPPGVMGPPGPPGPPGPPG 730


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 43/133 (32%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P G   P G     G  GPPG    +   +P   GL  GP  PSG  G      E  T G
Sbjct: 256 PPGVPGPRGEPGAVGPKGPPGV---DGVGVPGAAGLP-GPQGPSGAKG------EPGTRG 305

Query: 63  RCFLTGAFWTGVLGTSPAPALGAGPCALGARL-----PRCPSRPGLEALRGLRGFQPGRQ 117
              L G    G+ G  P P    GP  +   L     P     PG +  +GL G  PG  
Sbjct: 306 PPGLIGPTGYGMPGL-PGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGG-PPGLP 363

Query: 118 RSRGLRAAKGDSG 130
            S GL   +G  G
Sbjct: 364 GSAGLPGRRGPPG 376



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 1   MEPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVT 60
           M+ +G   P G    RG  GPPG   +     P L G + GP  P G     +     + 
Sbjct: 73  MDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHG-QPGPAGPPGFSRMGKAGPPGLP 131

Query: 61  A-----GRCFLTGAFWTGVLGTS-----PAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
                 G+  L G    G+ G       P P    GP  +       P +PG + + G  
Sbjct: 132 GKVGPPGQPGLRGE--PGIRGDQGLRGPPGPPGLPGPSGI-----TIPGKPGAQGVPGPP 184

Query: 111 GFQ--PGRQRSRGL---RAAKGDSGVG 132
           GFQ  PG Q   G    R  KGD+GVG
Sbjct: 185 GFQGEPGPQGEPGPPGDRGLKGDNGVG 211



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 16  RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFWTGVL 75
           RG  GPPG        +P   G +  P  P G  G      E    G   L G    G  
Sbjct: 155 RGPPGPPGLPGPSGITIPGKPGAQGVP-GPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQP 213

Query: 76  GTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           G   AP  G  P   G   P    +PGL+ L G  G   G     G+   +G+ G
Sbjct: 214 GLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPG-DKGESGPPGVPGPRGEPG 267



 Score = 35.4 bits (80), Expect = 0.020
 Identities = 49/168 (29%), Positives = 58/168 (34%), Gaps = 41/168 (24%)

Query: 3   PEGARAPAG--------GGPGR----GSAGPPGAALREPEALPPLGGL-----------E 39
           P+G R PAG        G PG     G  GP G  L  P  LP   GL           E
Sbjct: 323 PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQG--LGGPPGLPGSAGLPGRRGPPGPKGE 380

Query: 40  HGPLRPSGGGGWSEDDAEDVTAGRCFLTGAFW----------TGVLGTSPAPALGAGPCA 89
            GP  P G  G   D      AG+  + G             TG  G         GP  
Sbjct: 381 AGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGV 440

Query: 90  LGARLPR----CPSRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGV 131
            GA   +     P +PGL    G+ G Q   G    +GL   KG+ G+
Sbjct: 441 AGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGL 488



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSED------DAED 58
           G + P+G     G+ GPPG        +P L G   G   P+G  G   D      D E 
Sbjct: 290 GPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG-PKGDRGPAGVPGLLGDRGEPGEDGEP 348

Query: 59  VTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRG-----FQ 113
              G   L G    G+ G++  P     P   G   P  P  PG+  +RG +G      +
Sbjct: 349 GEQGPQGLGGP--PGLPGSAGLPGRRGPPGPKGEAGPGGP--PGVPGIRGDQGPSGLAGK 404

Query: 114 PGRQRSRGLRAAKGDSG 130
           PG    RGL  A G  G
Sbjct: 405 PGVPGERGLPGAHGPPG 421



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 12  GGPGRGSAGPPG-AALREPEALPPLGGL--EHGPLRPSGGGGWSEDDAEDVTAGRCFLTG 68
           G PG G AG PG A    P  +P   G+    GP  P G  G      E   AG     G
Sbjct: 490 GPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNG 549

Query: 69  AFWTGVLGTSPAPALGAG 86
                VLG    P  G G
Sbjct: 550 GVEGAVLGKGGKPQFGLG 567


>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
           sapiens]
          Length = 492

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 7   RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
           R   GG  G G  G  G  L  P +LPP      G  R  GGGG S     DVTAGR   
Sbjct: 324 REKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTG--RGEGGGGGSR---ADVTAGRARP 377

Query: 67  TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
               W       +G    +PAP L   PC   A +    +  G    R   G  PG +  
Sbjct: 378 RRRRWEPLRAQRSGARPGAPAPPL---PCLPPAAVCHALAGAGAPGGRLELGLSPGTRLI 434

Query: 120 RGLRAA 125
           RG  AA
Sbjct: 435 RGGGAA 440


>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
           sapiens]
          Length = 492

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 7   RAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFL 66
           R   GG  G G  G  G  L  P +LPP      G  R  GGGG S     DVTAGR   
Sbjct: 324 REKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTG--RGEGGGGGSR---ADVTAGRARP 377

Query: 67  TGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
               W       +G    +PAP L   PC   A +    +  G    R   G  PG +  
Sbjct: 378 RRRRWEPLRAQRSGARPGAPAPPL---PCLPPAAVCHALAGAGAPGGRLELGLSPGTRLI 434

Query: 120 RGLRAA 125
           RG  AA
Sbjct: 435 RGGGAA 440


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 45/132 (34%), Positives = 51/132 (38%), Gaps = 28/132 (21%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALP-PLGGLEHGPLRPSGGGGWS--EDDAEDVT 60
            EG   PAG    RG  GPPG   +  + +P PL     GPL P G  G S  E D  DV 
Sbjct: 1030 EGPVGPAGKKGSRGERGPPGPTGK--DGIPGPL-----GPLGPPGAAGPSGEEGDKGDVG 1082

Query: 61   AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR-CPSRPGLEALRGLRGFQPGRQRS 119
            A           G  G+         P   G R P   P  PG +  +G RG        
Sbjct: 1083 A----------PGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRG-------P 1125

Query: 120  RGLRAAKGDSGV 131
             GL   KGD GV
Sbjct: 1126 PGLFGQKGDDGV 1137



 Score = 36.6 bits (83), Expect = 0.009
 Identities = 43/137 (31%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGL-EHGPLRPSGGGGWSEDDAEDVTA 61
            P GAR P G     G  G PG  + EP  L   G +   GPL PSG  G   D       
Sbjct: 1344 PMGARGPPGRVGPEGLRGIPG-PVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEK 1402

Query: 62   GRCFLTGAFW----TGVLGTSPAPALGAGPCALGARLPRCP----SRPGLEALRGLRGFQ 113
            G   L G        G  G    P +   P   G   P  P      PG   + G  G Q
Sbjct: 1403 GHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLG-Q 1461

Query: 114  PGRQRSRGLRAAKGDSG 130
             G + S G    +GD+G
Sbjct: 1462 KGSKGSPGSMGPRGDTG 1478



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 51/157 (32%), Positives = 60/157 (38%), Gaps = 36/157 (22%)

Query: 3    PEGARAPAG--------GGPG-------RGSAGPPG-AALREPEALPPLGGLE--HGPLR 44
            P GA  P+G        G PG       +G AGPPG   +R P   P   G +   G   
Sbjct: 1065 PPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRG 1124

Query: 45   PSGGGGWSEDDAEDVTAGRCFLTGAFWTGVLGTSPAPA-------LGA-GPCALGARLPR 96
            P G  G   DD       R F+      G+ G    P        +G+ GP   GA  PR
Sbjct: 1125 PPGLFGQKGDDGV-----RGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGP--HGAPGPR 1177

Query: 97   CPSRP-GLEALRGLRG--FQPGRQRSRGLRAAKGDSG 130
             P  P G E   GL G   QPG    +G R   GD G
Sbjct: 1178 GPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPG 1214



 Score = 32.7 bits (73), Expect = 0.13
 Identities = 36/128 (28%), Positives = 41/128 (32%), Gaps = 35/128 (27%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G + P G    +GS GP G        LP       G L P G  G S  D      G
Sbjct: 1242 PPGKKGPPGEDGAKGSVGPTG--------LP-------GDLGPPGDPGVSGIDGSPGEKG 1286

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGL 122
                            P    G GP          P  PG    RG  G   GR+   G 
Sbjct: 1287 ---------------DPGDVGGPGPPGASGE----PGAPGPPGKRGPSGHM-GREGREGE 1326

Query: 123  RAAKGDSG 130
            + AKG+ G
Sbjct: 1327 KGAKGEPG 1334



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 29/126 (23%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRC 64
           G   P G    RG+ GPPG   +  E  P       G L P G  G           GR 
Sbjct: 572 GQPGPPGEDGERGAEGPPGPTGQAGEPGP------RGLLGPRGSPG---------PTGRP 616

Query: 65  FLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRA 124
            +TG      +  +P      GP       P  P  PG +   G +G  PG Q   G   
Sbjct: 617 GVTG------IDGAPGAKGNVGP-------PGEPGPPGQQGNHGSQGL-PGPQGLIGTPG 662

Query: 125 AKGDSG 130
            KG  G
Sbjct: 663 EKGPPG 668



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 40/145 (27%), Positives = 49/145 (33%), Gaps = 20/145 (13%)

Query: 4   EGARAPAGGGPGRGSAGPPGAALREPE-ALPPLGGLE-----------HGPLRPSGGGGW 51
           +G   P G     G  GPPG+A  + +  +P L G              GPL P G  G 
Sbjct: 760 DGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGK 819

Query: 52  SEDDAEDVTAGRCFLTGAFW-TGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLR 110
           S    +    G     G+    G  G +  P         GA  P  P   GL  L+G  
Sbjct: 820 SGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGA--PGIPGEKGLPGLQGPP 877

Query: 111 GF-----QPGRQRSRGLRAAKGDSG 130
           GF      PG Q   G     G  G
Sbjct: 878 GFPGPKGPPGHQGKDGRPGHPGQRG 902



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 41/141 (29%), Positives = 51/141 (36%), Gaps = 22/141 (15%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE--HGPLRPSGGGGWSEDDAEDVT 60
            P+G     G    RG  GPPG      + LP L G E   G L P G  G      ++  
Sbjct: 921  PQGKTGEVGPLGERGPPGPPGPP--GEQGLPGLEGREGAKGELGPPGPLG------KEGP 972

Query: 61   AGRCFLTGAFW-------TGVLGTSPAPALGAGPCALGARLPRCPS----RPGLEALRGL 109
            AG     G          TG+ G    P       + G R P  P+     PG     G 
Sbjct: 973  AGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGP 1032

Query: 110  RGFQPGRQRSRGLRAAKGDSG 130
             G   G++ SRG R   G +G
Sbjct: 1033 VG-PAGKKGSRGERGPPGPTG 1052


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 43/136 (31%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA------LREPEALPPLGGLEHGPLRPSGGGGWSEDDA 56
           P G R P G    RGS GPPG          + E  PP    E GP+ P+G  G      
Sbjct: 444 PPGPRGPRGD---RGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKG 500

Query: 57  EDVTAGRCFLTGA-FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPG 115
              + G     G+    G  G S  P     P   G   P+ P  PG + L+G  G +PG
Sbjct: 501 SKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGP--PGFQGLQGTVG-EPG 557

Query: 116 RQRSRGLRAAKGDSGV 131
               RGL    G  G+
Sbjct: 558 VPGPRGLPGLPGVPGM 573


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 40/129 (31%), Positives = 52/129 (40%), Gaps = 26/129 (20%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAEDV 59
           G + P G    +G  GPPG  ++ P+  P   GL       GP  P G  G      E  
Sbjct: 768 GVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTG------EKG 821

Query: 60  TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRS 119
             G   + GA  TG +G  P  A  +GP          P R G +   GLRG  PG +  
Sbjct: 822 AQGSPGVKGA--TGPVG--PPGASVSGP----------PGRDGQQGQTGLRG-TPGEKGP 866

Query: 120 RGLRAAKGD 128
           RG +   G+
Sbjct: 867 RGEKGEPGE 875



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 37/157 (23%)

Query: 4    EGARAPAGGGPGR----GSAGPPGAALREPEALPPLGGLEH-GPLRPSGGGGW-----SE 53
            E  RA   GGPG+    G  GPPG          P G   H G   PSG  G      S 
Sbjct: 1381 EKGRAGMPGGPGKSGSMGPVGPPG----------PAGERGHPGAPGPSGSPGLPGVPGSM 1430

Query: 54   DDAEDVTAGRCFLTG----------AFWTG----VLGTSPAPALGAGPCALGAR-LPRCP 98
             D  +    + F+            A++T      +  + AP     P   GA   P  P
Sbjct: 1431 GDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAP 1490

Query: 99   SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGVGI 133
              PGL    G  G Q  PG +   G +  KGD G+GI
Sbjct: 1491 GSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGI 1527



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 41/136 (30%), Positives = 49/136 (36%), Gaps = 29/136 (21%)

Query: 12   GGPG----RGSAGPPGAALREPEALPPLGGLE-----HGPLRPSGGGGWSEDDAEDVTAG 62
            G PG     G  GPPG   +  E  PP  G+       GP+ P G  G           G
Sbjct: 1012 GDPGCVGSPGLPGPPGLPGQRGEEGPP--GMRGSPGPPGPIGPPGFPGAVGSPGLPGLQG 1069

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--------QP 114
               LTG   TG  G    P     P A G         PGL  ++G RG+        +P
Sbjct: 1070 ERGLTGL--TGDKGEPGPPGQPGYPGATGP--------PGLPGIKGERGYTGSAGEKGEP 1119

Query: 115  GRQRSRGLRAAKGDSG 130
            G   S GL    G +G
Sbjct: 1120 GPPGSEGLPGPPGPAG 1135



 Score = 32.0 bits (71), Expect = 0.22
 Identities = 44/152 (28%), Positives = 52/152 (34%), Gaps = 24/152 (15%)

Query: 5   GARAPAGGGPGRGSAGPPG--AALREP-EALPPLGGLEHGPLR------PSGGGGWSEDD 55
           G   PAG     G  GP G   A  EP E  P L  L+ G +R      PSG  G     
Sbjct: 605 GEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPP 664

Query: 56  A-----EDVTAGRCFLTGAFWT-------GVLGTSPAPALGAGPCALGARLPRCPSRPGL 103
                 +   AG   L G           G  GT+  P L   P   G   P+     G 
Sbjct: 665 GFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGC 724

Query: 104 EALRGLRGF---QPGRQRSRGLRAAKGDSGVG 132
            A   L+G      GR    G +  +G  GVG
Sbjct: 725 TACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 42/138 (30%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGP-LR----PSGGGGWSEDDAED 58
            EG R P+G     G  GPPG  ++ P  L  L G +  P LR    P+G  G        
Sbjct: 1188 EGIRGPSGLPGSPGPPGPPG--IQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFK 1245

Query: 59   VTAGRCFLTG----AFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQP 114
               G   L G        G  G++  P     P A+G +      RPG     G  G  P
Sbjct: 1246 GKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQ-----GRPGPPGHVGPPG-PP 1299

Query: 115  GRQRSRGLRAA--KGDSG 130
            G+    G+ A   KGD G
Sbjct: 1300 GQPGPAGISAVGLKGDRG 1317



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 37/143 (25%), Positives = 49/143 (34%), Gaps = 28/143 (19%)

Query: 4    EGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGR 63
            +G R   G    +G  GPPG+     E LP       GP  P+G  G           G 
Sbjct: 1104 KGERGYTGSAGEKGEPGPPGS-----EGLP-------GPPGPAGPRGERGPQGNSGEKGD 1151

Query: 64   CFLTG----------AFWTGVLGTSPAPALGAGPCALGAR----LPRCPSRPGLEALRGL 109
                G            + G +G+   P   A   + G R    LP  P  PG   ++G 
Sbjct: 1152 QGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGP 1211

Query: 110  RGFQ--PGRQRSRGLRAAKGDSG 130
             G     G+    GLR   G +G
Sbjct: 1212 AGLDGLDGKDGKPGLRGDPGPAG 1234



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 41/139 (29%), Positives = 48/139 (34%), Gaps = 19/139 (13%)

Query: 3   PEGARAPAG-----GGPG----RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSE 53
           P G   P G     G PG     G  GPPGA++  P   P   G + G     G  G   
Sbjct: 810 PRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGP---PGRDG-QQGQTGLRGTPGEKG 865

Query: 54  DDAEDVTAGRCFLTGAFWTGVLGTSPAPALGAG----PCALG-ARLPRCPSRPGLEALRG 108
              E    G C           G   AP L  G    P   G   +P  P  PG+  L+G
Sbjct: 866 PRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQG 925

Query: 109 LRGFQPGRQRSRGLRAAKG 127
           + G   G     GL A  G
Sbjct: 926 VPG-NNGLPGQPGLTAELG 943



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 23/134 (17%)

Query: 3   PEGARAPAG--GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDV 59
           P+G +   G  G  G  G  GPPG        LP   G   GP  P G  G S    ++ 
Sbjct: 430 PKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEG 489

Query: 60  TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRP-GLEALRGLRGFQPGRQR 118
             G+         GV G          PC +      CP+ P G +   GL G +PG + 
Sbjct: 490 PGGK-----PGKPGVKGEK------GDPCEV------CPTLPEGFQNFVGLPG-KPGPKG 531

Query: 119 SRGLRA-AKGDSGV 131
             G    A+GD G+
Sbjct: 532 EPGDPVPARGDPGI 545


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 47/153 (30%), Positives = 55/153 (35%), Gaps = 25/153 (16%)

Query: 3   PEGARAPAG-------GGPGR-------------GSAGPPGAALREPEALPPLGGLEHGP 42
           P G R P G       G PG+             G AGPPG        LP L G E GP
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKG-ERGP 312

Query: 43  LRPSGGGGWSEDDAEDVTAGRCFLTGAFWT-GVLGTSPAPALGAGPCALGARLPRCPS-R 100
               GG G   +       G+  LTG     G  G    P     P   G   P  P+  
Sbjct: 313 AGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGY 372

Query: 101 PGLEALRGLRGF--QPGRQRSRGLRAAKGDSGV 131
           PG +  RG  G   +PG     GL   KG+ G+
Sbjct: 373 PGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGL 405



 Score = 33.5 bits (75), Expect = 0.075
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
           P+G   PAG    RG  GPPG       ++P   G + GP    G  G+  +       G
Sbjct: 125 PKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPG-QQGPTGAPGPRGFPGEKGAPGVPG 183

Query: 63  RCFLTGAFWTGVLGT--------SPAPALGAGPCALGARLPR-CPSRPGLEALRGLRGFQ 113
                G    G  G            P   +GP  +G R     P +PG++  RG  G  
Sbjct: 184 MNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEM 243

Query: 114 -----PGRQRSRGLRAAKG 127
                PG Q   G R  +G
Sbjct: 244 GPIGPPGPQGPPGERGPEG 262



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 39/135 (28%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGG-----GWSEDDAEDV 59
           G   PAG     G +GPPG        L    GL  GP  PS  G     G      E  
Sbjct: 63  GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP-GPPGPSAVGKPGVPGLPGKPGERG 121

Query: 60  TAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGF--QPGRQ 117
             G     G    G+ G    P     P   G  +P  P + G     G RGF  + G  
Sbjct: 122 PYGPKGDVGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAP 179

Query: 118 RSRGLRAAKGDSGVG 132
              G+   KG+ G G
Sbjct: 180 GVPGMNGQKGEMGYG 194


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
           P GAR P G     G  G PG++   LR     P L G +    RP        G  G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 53  EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
                  + G     G               G LG+   P +      P  L  + P  P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483

Query: 99  SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
             PGL  L GL G +  PGRQ + GL+ + G  G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)

Query: 4   EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
           EG   P G  G PG  G  GPPG  +  P   + LP L GL+      G   P G  G  
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844

Query: 53  EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
             D      E  + G             R +       G  G      +   P A+G   
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902

Query: 95  PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           P  P  PG    RG  G  PG +  RG   AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)

Query: 17  GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
           G  GPPG     L  P+    L G         E GP  PSG                  
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277

Query: 66  LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
           L G  +    G    P L   P   G      P  PG E ++G RGF PG     G++  
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331

Query: 126 KGDSG 130
           KGD G
Sbjct: 332 KGDIG 336



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 12   GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
            G PG +G AG PG    R    +P L GL+  P  P+G  G   D       G   L G 
Sbjct: 955  GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013

Query: 70   FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
               G +G    P        LG   P    RPGL  + GL+G +     S G R      
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069

Query: 126  KGDSGV--GIRRKGSTRREG 143
             GD G+   + +KG   + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 4   EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
           +G + P G     G PG  G AGPPG   +    L    G+   P  P   G   E    
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651

Query: 58  DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
               G          G  G    P    GP  +   L +C  P  PG +   G+ G    
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702

Query: 113 -QPGRQRSRGLRAAKGDSG 130
             PG +  +G    KG  G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   PAG     GS G PG        LP   G  HG L   G  G            
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
               L G    G+ G    P     P  +G R  +     P   G +   GL    PG + 
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183

Query: 119  SRGLRAAKGDSG 130
            + G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
           P GAR P G     G  G PG++   LR     P L G +    RP        G  G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 53  EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
                  + G     G               G LG+   P +      P  L  + P  P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483

Query: 99  SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
             PGL  L GL G +  PGRQ + GL+ + G  G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)

Query: 4   EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
           EG   P G  G PG  G  GPPG  +  P   + LP L GL+      G   P G  G  
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844

Query: 53  EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
             D      E  + G             R +       G  G      +   P A+G   
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902

Query: 95  PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           P  P  PG    RG  G  PG +  RG   AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)

Query: 17  GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
           G  GPPG     L  P+    L G         E GP  PSG                  
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277

Query: 66  LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
           L G  +    G    P L   P   G      P  PG E ++G RGF PG     G++  
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331

Query: 126 KGDSG 130
           KGD G
Sbjct: 332 KGDIG 336



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 12   GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
            G PG +G AG PG    R    +P L GL+  P  P+G  G   D       G   L G 
Sbjct: 955  GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013

Query: 70   FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
               G +G    P        LG   P    RPGL  + GL+G +     S G R      
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069

Query: 126  KGDSGV--GIRRKGSTRREG 143
             GD G+   + +KG   + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 4   EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
           +G + P G     G PG  G AGPPG   +    L    G+   P  P   G   E    
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651

Query: 58  DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
               G          G  G    P    GP  +   L +C  P  PG +   G+ G    
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702

Query: 113 -QPGRQRSRGLRAAKGDSG 130
             PG +  +G    KG  G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   PAG     GS G PG        LP   G  HG L   G  G            
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
               L G    G+ G    P     P  +G R  +     P   G +   GL    PG + 
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183

Query: 119  SRGLRAAKGDSG 130
            + G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
           P GAR P G     G  G PG++   LR     P L G +    RP        G  G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 53  EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
                  + G     G               G LG+   P +      P  L  + P  P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483

Query: 99  SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
             PGL  L GL G +  PGRQ + GL+ + G  G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)

Query: 4   EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
           EG   P G  G PG  G  GPPG  +  P   + LP L GL+      G   P G  G  
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844

Query: 53  EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
             D      E  + G             R +       G  G      +   P A+G   
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902

Query: 95  PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           P  P  PG    RG  G  PG +  RG   AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)

Query: 17  GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
           G  GPPG     L  P+    L G         E GP  PSG                  
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277

Query: 66  LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
           L G  +    G    P L   P   G      P  PG E ++G RGF PG     G++  
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331

Query: 126 KGDSG 130
           KGD G
Sbjct: 332 KGDIG 336



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 12   GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
            G PG +G AG PG    R    +P L GL+  P  P+G  G   D       G   L G 
Sbjct: 955  GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013

Query: 70   FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
               G +G    P        LG   P    RPGL  + GL+G +     S G R      
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069

Query: 126  KGDSGV--GIRRKGSTRREG 143
             GD G+   + +KG   + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 4   EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
           +G + P G     G PG  G AGPPG   +    L    G+   P  P   G   E    
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651

Query: 58  DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
               G          G  G    P    GP  +   L +C  P  PG +   G+ G    
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702

Query: 113 -QPGRQRSRGLRAAKGDSG 130
             PG +  +G    KG  G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   PAG     GS G PG        LP   G  HG L   G  G            
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
               L G    G+ G    P     P  +G R  +     P   G +   GL    PG + 
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183

Query: 119  SRGLRAAKGDSG 130
            + G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 26/154 (16%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAA---LREPEALPPLGGLEHGPLRPS-------GGGGWS 52
           P GAR P G     G  G PG++   LR     P L G +    RP        G  G +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423

Query: 53  EDDAEDVTAGRCFLTGAF-----------WTGVLGTSPAPALG---AGPCALGARLPRCP 98
                  + G     G               G LG+   P +      P  L  + P  P
Sbjct: 424 GSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIP 483

Query: 99  SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSG 130
             PGL  L GL G +  PGRQ + GL+ + G  G
Sbjct: 484 GPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517



 Score = 33.1 bits (74), Expect = 0.098
 Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 32/156 (20%)

Query: 4   EGARAPAG--GGPGR-GSAGPPGAALREP---EALPPLGGLE-----HGPLRPSGGGGWS 52
           EG   P G  G PG  G  GPPG  +  P   + LP L GL+      G   P G  G  
Sbjct: 785 EGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP 844

Query: 53  EDD-----AEDVTAG-------------RCFLTGAFWTGVLGTSPAPALGAGPCALGARL 94
             D      E  + G             R +       G  G      +   P A+G   
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGP-- 902

Query: 95  PRCPSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSG 130
           P  P  PG    RG  G  PG +  RG   AKG+ G
Sbjct: 903 PGPPGNPGTPGQRGSPGI-PGVKGQRGTPGAKGEQG 937



 Score = 32.3 bits (72), Expect = 0.17
 Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 35/125 (28%)

Query: 17  GSAGPPGAA---LREPEALPPLGGL--------EHGPLRPSGGGGWSEDDAEDVTAGRCF 65
           G  GPPG     L  P+    L G         E GP  PSG                  
Sbjct: 236 GPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSG------------------ 277

Query: 66  LTGAFWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLRAA 125
           L G  +    G    P L   P   G      P  PG E ++G RGF PG     G++  
Sbjct: 278 LPGESYGSEKGAPGDPGLQGKPGKDGV-----PGFPGSEGVKGNRGF-PGLMGEDGIKGQ 331

Query: 126 KGDSG 130
           KGD G
Sbjct: 332 KGDIG 336



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 12   GGPG-RGSAGPPGA-ALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAGRCFLTGA 69
            G PG +G AG PG    R    +P L GL+  P  P+G  G   D       G   L G 
Sbjct: 955  GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLP-GPAGPPGPRGDLGSTGNPGEPGLRGI 1013

Query: 70   FWTGVLGTSPAPALGAGPCALGARLPRCPSRPGLEALRGLRGFQPGRQRSRGLR----AA 125
               G +G    P        LG   P    RPGL  + GL+G +     S G R      
Sbjct: 1014 --PGSMGNMGMPGSKGKRGTLG--FPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069

Query: 126  KGDSGV--GIRRKGSTRREG 143
             GD G+   + +KG   + G
Sbjct: 1070 TGDPGLPGDMGKKGEMGQPG 1089



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 4   EGARAPAG-----GGPG-RGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAE 57
           +G + P G     G PG  G AGPPG   +    L    G+   P  P   G   E    
Sbjct: 592 KGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVS 651

Query: 58  DVTAGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC--PSRPGLEALRGLRGF--- 112
               G          G  G    P    GP  +   L +C  P  PG +   G+ G    
Sbjct: 652 TPVPGP--------PGPPGPPGHPG-PQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702

Query: 113 -QPGRQRSRGLRAAKGDSG 130
             PG +  +G    KG  G
Sbjct: 703 GPPGPKGDQGFPGTKGSLG 721



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 38/132 (28%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 3    PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTAG 62
            P G   PAG     GS G PG        LP   G  HG L   G  G            
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPG--------LPGKPG-PHGDLGFKGIKG------------ 1128

Query: 63   RCFLTGAFWTGVLGTSPAPALGAGPCALGARLPR----CPSRPGLEALRGLRGFQPGRQR 118
               L G    G+ G    P     P  +G R  +     P   G +   GL    PG + 
Sbjct: 1129 ---LLGP--PGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRG 1183

Query: 119  SRGLRAAKGDSG 130
            + G + AKGD G
Sbjct: 1184 NPGAQGAKGDRG 1195


>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
          Length = 1142

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 40/128 (31%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 2   EPEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDAEDVTA 61
           +P G   P G    +G AGPPG      ++LP   GL+  P  P   G   E     V  
Sbjct: 562 DPGGIIGPPGLPGPKGEAGPPG------KSLPGEPGLDGNPGAPGPRGPKGERGLPGV-H 614

Query: 62  GRCFLTGAFWTGVLGTSPAPALGAGPCALGAR-LPRCPSRPGLEALRGLRGFQPGRQRSR 120
           G     G    G+ G + A      P   G R LP  P  PG     G+    PGR    
Sbjct: 615 GSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGV----PGRDGKP 670

Query: 121 GLRAAKGD 128
           GL    GD
Sbjct: 671 GLPGPPGD 678



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 3   PEGARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGGWSEDDA--EDVT 60
           P+G     G    RG  GPPG    +P    P G      +  + GG +++D+   ++  
Sbjct: 398 PQGPPGKEGQRGRRGKTGPPG----KPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHE 453

Query: 61  AGRCFLTGAFWTGVLGTSPAPALGAGPCALGARLPRC-PSRPGLEALRGLRGFQPGRQRS 119
           AG          G+ G      L   P ++G +  +  P  P  +  +G RG +PG   S
Sbjct: 454 AG----------GLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRG-EPGVIGS 502

Query: 120 RGLRAAKGDSG 130
           +G++   GD G
Sbjct: 503 QGVKGEPGDPG 513



 Score = 28.9 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 98   PSRPGLEALRGLRGFQPGRQRSRGLRAAKGDSGVGI 133
            P  PG + L G  G  PG Q  RG +  +G+ G+G+
Sbjct: 1056 PGPPGKDGLPGPPG-DPGPQGYRGQKGERGEPGIGL 1090



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 5   GARAPAGGGPGRGSAGPPGAALREPEALPPLGGLEHGPLRPSGGGG 50
           G   P G    +G  GPPG     P ALP   G++ GP  P G  G
Sbjct: 367 GPHGPPGPKGEKGDTGPPG-----PPALPGSLGIQ-GPQGPPGKEG 406



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 42/165 (25%), Positives = 53/165 (32%), Gaps = 36/165 (21%)

Query: 3   PEGARAPAGGGPGRGS---AGPPGAALREPEALPPL----GGLE----HGPLRPSGGGGW 51
           P GA+   G     G     GPPG    E   +  L    GG+      GP  P G  G 
Sbjct: 793 PTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGD 852

Query: 52  SEDDAEDVTAGRCFLTG----------AFWTGVLGTSPAPALGAGPCALGARLPRCP--- 98
                E    G   L G          A   G+ G S  P     P   G    R P   
Sbjct: 853 PGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGD 912

Query: 99  ----------SRPGLEALRGLRGFQ--PGRQRSRGLRAAKGDSGV 131
                      +PG+    G+ G Q   G+   RG +  +GD G+
Sbjct: 913 IGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGI 957


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,644,651
Number of Sequences: 37866
Number of extensions: 567045
Number of successful extensions: 4778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 3322
Number of HSP's gapped (non-prelim): 1518
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press