Guide to the Human Genome
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Name: LOC100132663 Sequence: fasta or formatted (155aa) NCBI GI: 169166135
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {155aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         20           2
 C cysteine            1.9          3           1
 D aspartate           2.6          4           2
 E glutamate           7.1         11           1
 F phenylalanine       1.9          3           1
 G glycine            20.6         32           4
 H histidine           0.6          1           1
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine             9.7         15           1
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            11.6         18           2
 Q glutamine           1.9          3           1
 R arginine           12.9         20           2
 S serine              5.2          8           1
 T threonine           3.9          6           1
 V valine              1.9          3           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132663          1.000   PREDICTED: hypothetical protein 
COL18A1               0.073   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.073   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.073   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL3A1                0.070   collagen type III alpha 1 preproprotein 
LOC100293055          0.063   PREDICTED: similar to COL22A1 protein 
COL22A1               0.063   collagen, type XXII, alpha 1 
COL24A1               0.063   collagen, type XXIV, alpha 1 
COL1A1                0.063   alpha 1 type I collagen preproprotein 
COL4A1                0.060   alpha 1 type IV collagen preproprotein 
KHSRP                 0.060   KH-type splicing regulatory protein 
COL2A1                0.053   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.053   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.050   alpha 1 type VII collagen precursor 
COL1A2                0.050   alpha 2 type I collagen 
COL5A2                0.050   alpha 2 type V collagen preproprotein 
COL15A1               0.047   alpha 1 type XV collagen precursor 
COL8A2                0.047   collagen, type VIII, alpha 2 
LOC100290783          0.047   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.047   PREDICTED: hypothetical protein XP_002343435 
COL5A3                0.047   collagen, type V, alpha 3 preproprotein 
COLEC12               0.047   collectin sub-family member 12 
COL16A1               0.047   alpha 1 type XVI collagen precursor 
COL10A1               0.043   type X collagen alpha 1 precursor 
COL4A3                0.043   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.043   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.043   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.043   alpha 3 type IV collagen isoform 1 precursor 
COL19A1               0.043   alpha 1 type XIX collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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