Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 16753207
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16753207 ubiquilin 2 [Homo sapiens]
(624 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16753207 ubiquilin 2 [Homo sapiens] 1224 0.0
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 888 0.0
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 827 0.0
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 666 0.0
gi|8567418 ubiquilin 3 [Homo sapiens] 394 e-109
gi|145580580 ubiquilin-like [Homo sapiens] 216 4e-56
gi|239755972 PREDICTED: similar to prostate collagen triple heli... 59 1e-08
gi|239750495 PREDICTED: similar to prostate collagen triple heli... 59 1e-08
gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo ... 59 1e-08
gi|209447093 prostate collagen triple helix isoform 2 [Homo sapi... 58 3e-08
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 57 4e-08
gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens] 57 5e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 56 1e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 56 1e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 3e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 3e-07
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 54 6e-07
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 54 6e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 53 7e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 53 7e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 53 7e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 53 7e-07
gi|50511941 EMI domain containing 1 [Homo sapiens] 53 1e-06
gi|41152107 ubiquitin-like 7 [Homo sapiens] 52 2e-06
gi|14249682 ubiquitin-like 7 [Homo sapiens] 52 2e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 51 4e-06
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho... 51 4e-06
gi|65301115 C1q and tumor necrosis factor related protein 9 [Hom... 51 4e-06
gi|239753818 PREDICTED: hypothetical protein [Homo sapiens] 50 6e-06
gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo ... 50 6e-06
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 1224 bits (3167), Expect = 0.0
Identities = 624/624 (100%), Positives = 624/624 (100%)
Query: 1 MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEA 60
MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEA
Sbjct: 1 MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEA 60
Query: 61 ISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAG 120
ISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAG
Sbjct: 61 ISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAG 120
Query: 121 TNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPE 180
TNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPE
Sbjct: 121 TNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPE 180
Query: 181 MMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARN 240
MMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARN
Sbjct: 181 MMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARN 240
Query: 241 PAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSS 300
PAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSS
Sbjct: 241 PAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSS 300
Query: 301 SGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYV 360
SGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYV
Sbjct: 301 SGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYV 360
Query: 361 ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANP 420
ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANP
Sbjct: 361 ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANP 420
Query: 421 QLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGV 480
QLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGV
Sbjct: 421 QLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGV 480
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS
Sbjct: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
Query: 541 AAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREAN 600
AAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREAN
Sbjct: 541 AAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREAN 600
Query: 601 LQALIATGGDINAAIERLLGSQPS 624
LQALIATGGDINAAIERLLGSQPS
Sbjct: 601 LQALIATGGDINAAIERLLGSQPS 624
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 888 bits (2294), Expect = 0.0
Identities = 475/635 (74%), Positives = 523/635 (82%), Gaps = 57/635 (8%)
Query: 1 MAENGESSGPPRPSRGPAAAQGS----AAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQ 56
MAE+GES GPP A A+G+ AAA AEPKI+KVTVKTPKEKEEFAVPENSSVQQ
Sbjct: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
Query: 57 FKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPS 116
FKE ISKRFKS TDQLVLIFAGKILKDQDTL QHGIHDGLTVHLVIK+QNRPQ S Q +
Sbjct: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
Query: 117 NAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLM 176
N AG+N T++STP SNST S SNPFGLG LGGLAGLSSLGL++TNFSELQSQMQ+QL+
Sbjct: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
Query: 177 ASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLE 236
++PEMM+QIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISH+LNNPDIMRQTLE
Sbjct: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
Query: 237 IARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVG 296
+ARNPAMMQEMMRNQD ALSNLESIPGGYNALRRMYTDIQEPML+AAQEQFGGNPFAS+
Sbjct: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
Query: 297 SSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAA 356
S++SSGEG+QPSRTENRDPLPNPWAP + SSA++ T ++ G +G+++S +G + A
Sbjct: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
Query: 357 ANYV----ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 412
N V AS+F+TPGMQSLLQQITENPQL+QNMLSAPYMRSMMQSLSQNPDLAAQMMLN
Sbjct: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 420
Query: 413 SPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGL 472
+PLF NPQLQEQMR QLP FLQQMQNPDTLSAMSNPRAMQAL+QIQQGLQTLATEAPGL
Sbjct: 421 NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 480
Query: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
IP FTPG +G +G TG GS+G+ G
Sbjct: 481 IPGFTPG---------------------------------LGALGSTG-----GSSGTNG 502
Query: 533 PTGPTVSSAAPSETTSP---TSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQL 589
S+A PSE TSP T+E G +QQFIQQM+QALAG N PQL NPEVRFQQQLEQL
Sbjct: 503 ------SNATPSENTSPTAGTTEPG-HQQFIQQMLQALAGVN-PQLQNPEVRFQQQLEQL 554
Query: 590 NAMGFLNREANLQALIATGGDINAAIERLLGSQPS 624
+AMGFLNREANLQALIATGGDINAAIERLLGSQPS
Sbjct: 555 SAMGFLNREANLQALIATGGDINAAIERLLGSQPS 589
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 827 bits (2135), Expect = 0.0
Identities = 452/635 (71%), Positives = 499/635 (78%), Gaps = 85/635 (13%)
Query: 1 MAENGESSGPPRPSRGPAAAQGS----AAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQ 56
MAE+GES GPP A A+G+ AAA AEPKI+KVTVKTPKEKEEFAVPENSSVQQ
Sbjct: 1 MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ 60
Query: 57 FKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPS 116
FKE ISKRFKS TDQLVLIFAGKILKDQDTL QHGIHDGLTVHLVIK+QNRPQ S Q +
Sbjct: 61 FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQT 120
Query: 117 NAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLM 176
N AG+N T++STP SNST S SNPFGLG LGGLAGLSSLGL++TNFSELQSQMQ+QL+
Sbjct: 121 NTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLL 180
Query: 177 ASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLE 236
++PEMM+QIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISH+LNNPDIMRQTLE
Sbjct: 181 SNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLE 240
Query: 237 IARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVG 296
+ARNPAMMQEMMRNQD ALSNLESIPGGYNALRRMYTDIQEPML+AAQEQFGGNPFAS+
Sbjct: 241 LARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLV 300
Query: 297 SSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAA 356
S++SSGEG+QPSRTENRDPLPNPWAP + SSA++ T ++ G +G+++S +G + A
Sbjct: 301 SNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTA 360
Query: 357 ANYV----ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLN 412
N V AS+F+TPGMQSLLQQITENPQL+QNMLSAPYMRSMMQSLSQNPDLAA
Sbjct: 361 PNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAA----- 415
Query: 413 SPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGL 472
QMQNPDTLSAMSNPRAMQAL+QIQQGLQTLATEAPGL
Sbjct: 416 -----------------------QMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGL 452
Query: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
IP FTPG +G +G TG GS+G+ G
Sbjct: 453 IPGFTPG---------------------------------LGALGSTG-----GSSGTNG 474
Query: 533 PTGPTVSSAAPSETTSP---TSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQL 589
S+A PSE TSP T+E G +QQFIQQM+QALAG N PQL NPEVRFQQQLEQL
Sbjct: 475 ------SNATPSENTSPTAGTTEPG-HQQFIQQMLQALAGVN-PQLQNPEVRFQQQLEQL 526
Query: 590 NAMGFLNREANLQALIATGGDINAAIERLLGSQPS 624
+AMGFLNREANLQALIATGGDINAAIERLLGSQPS
Sbjct: 527 SAMGFLNREANLQALIATGGDINAAIERLLGSQPS 561
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 666 bits (1719), Expect = 0.0
Identities = 374/642 (58%), Positives = 446/642 (69%), Gaps = 79/642 (12%)
Query: 20 AQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGK 79
A+ S A P I+VTVKTPK+KEE + + +SV++FKE IS+RFK+Q DQLVLIFAGK
Sbjct: 2 AEPSGAETRPP--IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGK 59
Query: 80 ILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQST---------QPSNAAGTNTTSASTPR 130
ILKD DTL QHGI DGLTVHLVIK+ + Q + P++A T S +TP
Sbjct: 60 ILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPA 119
Query: 131 SNSTPISTNSNPFG-------------------------LGSLGGLAGLSSLGLSSTNFS 165
ST S +S+ L GG+ GL SLGL S NF
Sbjct: 120 QPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFM 179
Query: 166 ELQSQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLL 225
ELQ QMQ+QLM++PEM+ QIMENP VQ M+SNPDLMR +IMANPQMQQL++RNPEISH+L
Sbjct: 180 ELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML 239
Query: 226 NNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE 285
NNP++MRQT+E+ARNPAMMQEMMRNQD ALSNLESIPGGYNALRRMYTDIQEPM +AA+E
Sbjct: 240 NNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE 299
Query: 286 QFGGNPFASVGSSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNS 345
QFG NPF+S+ +S S +QP RTENR+PLPNPW+P P T S A S TG GSG S
Sbjct: 300 QFGNNPFSSLAGNSDS-SSSQPLRTENREPLPNPWSPSPPT-SQAPGSGGEGTG-GSGTS 356
Query: 346 SSNATGNT---VAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQN 402
+ T + + AA+ + +F++P MQ+LLQQI+ENPQL+QN++SAPYMRSMMQ+L+QN
Sbjct: 357 QVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQN 416
Query: 403 PDLAAQMMLNSPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGL 462
PD AAQMM+N PLF NPQLQEQ+R QLP FLQQMQNP++LS ++NPRAMQAL+QIQQGL
Sbjct: 417 PDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGL 476
Query: 463 QTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA 522
QTL TEAPGL+PS +G G I T PA
Sbjct: 477 QTLQTEAPGLVPS----------------------LGSFG-------------ISRT-PA 500
Query: 523 APPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRF 582
GS P PT S A P+ T+SPT S QQ +QQM+Q LAG+ Q+ PEVRF
Sbjct: 501 PSAGSNAGSTPEAPTSSPATPA-TSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRF 559
Query: 583 QQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQPS 624
QQQLEQLN+MGF+NREANLQALIATGGDINAAIERLLGSQ S
Sbjct: 560 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQLS 601
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 394 bits (1011), Expect = e-109
Identities = 264/670 (39%), Positives = 347/670 (51%), Gaps = 89/670 (13%)
Query: 16 GPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI 75
G A QGS A +P +IKVTVKTPK+KE+F+V + ++QQ KE IS+RFK+ DQLVLI
Sbjct: 5 GEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI 64
Query: 76 FAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTP 135
FAGKILKD D+L Q G+ DGLTVHLVIK Q+R G ++ + S P+ +S
Sbjct: 65 FAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIY 124
Query: 136 ISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQSML 195
+ F SLG L GLS LGL+ F + S + +Q ++ PE + Q++++PF+ +L
Sbjct: 125 PADGPPAF---SLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGLL 181
Query: 196 SNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLAL 255
SN L+RQL++ NP MQQLIQ NPEI H+LNNP+IMRQTLE RNPAMMQEM+R+QD L
Sbjct: 182 SNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRVL 241
Query: 256 SNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRDP 315
SNLESIPGGYN L MYTDI +PMLNA QEQFGGNPFA+ + +++ +QPSR EN DP
Sbjct: 242 SNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMENCDP 301
Query: 316 LPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQ 375
LPNPW T+T GSGS + + N + + LQQ
Sbjct: 302 LPNPW-------------TSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQ 348
Query: 376 ITENPQLIQNMLSAPYMRSMMQSLSQN---PDLAAQMMLNSPLF----TANPQLQEQM-- 426
+ ENPQ + Y++ +LSQ+ P ++ +SP + P +E +
Sbjct: 349 LHENPQSL-----GTYLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAI 403
Query: 427 --RPQLPAFLQQMQNPDTLSAMSNPRAMQA-------LMQIQQGLQTLATEAPGLIPSFT 477
R PAFL+ T A ++ L + GL A P SF+
Sbjct: 404 KGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFS 463
Query: 478 PGVGVGVLGTAIGPVGPVTP-----------------IGPIGPIVPFTPIGPIGP----- 515
P + + P P I P P++ P
Sbjct: 464 PTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQA 523
Query: 516 -------IGPTGPAAP-------PGSTGSGGPTGPTVSSAAPSETTSP------------ 549
+ AP P G+G G S P + P
Sbjct: 524 LRQIEQGLQVLATEAPRLLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPAL 583
Query: 550 -TSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATG 608
++E G M+Q L N PQ PE FQ QLEQL +MGFLNREANLQALIATG
Sbjct: 584 DSAELGFLSPPFLHMLQDLVSTN-PQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATG 642
Query: 609 GDINAAIERL 618
GD++AA+E+L
Sbjct: 643 GDVDAAVEKL 652
>gi|145580580 ubiquilin-like [Homo sapiens]
Length = 475
Score = 216 bits (551), Expect = 4e-56
Identities = 170/469 (36%), Positives = 234/469 (49%), Gaps = 82/469 (17%)
Query: 34 KVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH 93
+V VKT +++F V ++ SV+QFKE + F+ Q DQLVL+F G +LKD DTL Q GI
Sbjct: 32 RVIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIM 91
Query: 94 DGLTVHLVIKSQNRPQGQSTQ----PSN--AAGTNTTSASTPRSNSTPISTNSNPFGLGS 147
DG T++LVIKS+ + + P+N T ++ R + P N P L
Sbjct: 92 DGHTIYLVIKSKQGSRSLAHSFRDLPTNDPCHRDRNTKGNSSRVHQ-PTGMNQAPVELAH 150
Query: 148 LGGLAGLSSLGLSSTNFSELQSQMQQQLMAS-PEMMIQIMENPFVQSMLSNPDLMRQLIM 206
G S+ Q L S PE Q++ENP +Q +LSN + M Q I
Sbjct: 151 FVG--------------SDAPKVHTQNLEVSHPECKAQMLENPSIQRLLSNMEFMWQFIS 196
Query: 207 ANPQMQQLIQRNPEISH-LLNNPDIMRQTLEIARNPAMMQEMMRNQDLALS--------- 256
+ QQL+Q+NPE+S LL+N +I+ QTLE+ARN AM+QE+M+ Q + +
Sbjct: 197 EHLDTQQLMQQNPEVSRLLLDNSEILLQTLELARNLAMIQEIMQIQQPSQNLEYPLNPQP 256
Query: 257 --NLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRD 314
LE++PGG NAL + Y DI + MLN+ Q+ FGGNPF ++ +G+ + ++
Sbjct: 257 YLGLETMPGGNNALGQNYADINDQMLNSMQDPFGGNPFTAL----LAGQVLEQVQSSPPP 312
Query: 315 PLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTV---AAANYVASIFSTPGMQ- 370
P P+ TQ AT S+G S N+S+N T N V + AN ++ ST G
Sbjct: 313 PPPSQEQQDQLTQHPATRVIYNSSGGFSSNTSANDTLNKVNHTSKAN--TAMISTKGQSH 370
Query: 371 ----------------SLLQQITE------------------NPQLIQNMLSAPYMRSMM 396
L QQ+ E + QL S+ MM
Sbjct: 371 ICATRQPAWIPALPSIELTQQLQEEYKDATVSLSSSRQTLKGDLQLSDEQSSSQITGGMM 430
Query: 397 QSLSQNPDLAAQMMLNSPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSA 445
Q L NP LAAQ+M LFT+ PQL EQ R QLP FLQQ Q D LSA
Sbjct: 431 QLLMNNPYLAAQIM----LFTSMPQLSEQWRQQLPTFLQQTQISDLLSA 475
>gi|239755972 PREDICTED: similar to prostate collagen triple helix
[Homo sapiens]
Length = 116
Score = 59.3 bits (142), Expect = 1e-08
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 449 PRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFT 508
P A + + I L ++ E L+ + +P V T + P+ P +P P P++P T
Sbjct: 3 PEAWSSELMILSNLMGISEEG-NLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRT 61
Query: 509 P---IGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETTSPTSESGP 555
P GP+GP P GP P G G G P GP + PS PTS P
Sbjct: 62 PGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 472 LIPSFTPGVGVGVLGTA--------IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
LIP TPG G +G A IGP+GP P+GP GP++P P GP+GP P P
Sbjct: 57 LIPR-TPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFC 115
Query: 524 P 524
P
Sbjct: 116 P 116
>gi|239750495 PREDICTED: similar to prostate collagen triple helix
[Homo sapiens]
Length = 116
Score = 59.3 bits (142), Expect = 1e-08
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 449 PRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFT 508
P A + + I L ++ E L+ + +P V T + P+ P +P P P++P T
Sbjct: 3 PEAWSSELMILSNLMGISEEG-NLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRT 61
Query: 509 P---IGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETTSPTSESGP 555
P GP+GP P GP P G G G P GP + PS PTS P
Sbjct: 62 PGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 472 LIPSFTPGVGVGVLGTA--------IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
LIP TPG G +G A IGP+GP P+GP GP++P P GP+GP P P
Sbjct: 57 LIPR-TPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFC 115
Query: 524 P 524
P
Sbjct: 116 P 116
>gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo
sapiens]
Length = 116
Score = 59.3 bits (142), Expect = 1e-08
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 449 PRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFT 508
P A + + I L ++ E L+ + +P V T + P+ P +P P P++P T
Sbjct: 3 PEAWSSELMILSNLMGISEEG-NLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRT 61
Query: 509 P---IGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETTSPTSESGP 555
P GP+GP P GP P G G G P GP + PS PTS P
Sbjct: 62 PGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 472 LIPSFTPGVGVGVLGTA--------IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
LIP TPG G +G A IGP+GP P+GP GP++P P GP+GP P P
Sbjct: 57 LIPR-TPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFC 115
Query: 524 P 524
P
Sbjct: 116 P 116
>gi|209447093 prostate collagen triple helix isoform 2 [Homo
sapiens]
Length = 116
Score = 57.8 bits (138), Expect = 3e-08
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 449 PRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFT 508
P A + + I L + E L+ + +P V T + P+ P +P P P++P T
Sbjct: 3 PEAWSSELTILSNLMGTSEEG-NLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRT 61
Query: 509 P---IGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETTSPTSESGP 555
P GP+GP P GP P G G G P GP + PS PTS P
Sbjct: 62 PGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 472 LIPSFTPGVGVGVLGTA--------IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
LIP TPG G +G A IGP+GP P+GP GP++P P GP+GP P P
Sbjct: 57 LIPR-TPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFC 115
Query: 524 P 524
P
Sbjct: 116 P 116
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 57.4 bits (137), Expect = 4e-08
Identities = 56/167 (33%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 420 PQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAM-QALMQIQ-----QGLQTLATEAPGLI 473
P Q QM PQ P Q P P+ Q L + Q QG+Q PG
Sbjct: 629 PGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQ----RHPGPH 684
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P G G++ GP G + P GP GP P GP GP G GP PPG+ G GP
Sbjct: 685 GPLGPQGPPGPQGSS-GPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGP 743
Query: 534 TGPTVSSAAPSETTSPTSESGPNQQFIQQMVQ--ALAGANAPQLPNP 578
GP P + GP Q IQ V L G N + P
Sbjct: 744 PGPRGMQGPPH---PHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGP 787
Score = 45.1 bits (105), Expect = 2e-04
Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 27/233 (11%)
Query: 367 PGMQSLLQQITENPQLIQNMLSAPYMRSM----MQSLSQN--PDLAAQMMLNSPLFTANP 420
PG+ ++++ + Q PY + + Q+ QN P A +LN
Sbjct: 472 PGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKL 531
Query: 421 QLQEQMRPQLPAFLQQMQ--NPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTP 478
+ +++ + ++ + +Q NP L + R Q Q++Q ++ P L P P
Sbjct: 532 EEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQK--QVEQIQPPPSSGTPLLGPQPFP 589
Query: 479 GVG-VGVLGTAIGPVGP-------VTPIGPIGPIVPFTPIGPIGPIGPTGP------AAP 524
G G + + P + +GP GP F P GP G +GP GP P
Sbjct: 590 GQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGP 649
Query: 525 PGSTGSGGPTGPTVSSAAPSETTSPTS---ESGPNQQFIQQMVQALAGANAPQ 574
G G GP GP P + P GP+ Q G++ PQ
Sbjct: 650 QGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQ 702
Score = 30.4 bits (67), Expect = 5.1
Identities = 46/207 (22%), Positives = 66/207 (31%), Gaps = 58/207 (28%)
Query: 367 PGMQSLLQQITENPQLIQN---MLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANPQLQ 423
PG Q + +++ P + N M P R +Q P +M + P Q
Sbjct: 762 PGSQGIQGPVSQGPLMGLNPRGMQGPPGPRE-----NQGPAPQGMIMGHPP--------Q 808
Query: 424 EQMRPQLPAFL-----QQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTP 478
E P P L Q+M+ P + M P +++ Q L+
Sbjct: 809 EMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELR--------------- 853
Query: 479 GVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTV 538
GP G + GP P G +GP G PPG G P
Sbjct: 854 -----------GPPGSQSQQGP--------PQGSLGPPPQGGMQGPPGPQGQQNPARGPH 894
Query: 539 SSAAP---SETTSPTSESGPNQQFIQQ 562
S P + +P GP F Q+
Sbjct: 895 PSQGPIPFQQQKTPLLGDGPRAPFNQE 921
>gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens]
Length = 107
Score = 57.0 bits (136), Expect = 5e-08
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 467 TEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTP---IGPIGPIGPTGPAA 523
+E L+ + +P V T + P+ P +P P P++P TP GP+GP P GP
Sbjct: 11 SEEGNLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPLGPGF 70
Query: 524 PPGSTGSGGPTGP--TVSSAAPSETTSPTSESGP 555
P G G G P GP + PS PTS P
Sbjct: 71 PIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 104
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 472 LIPSFTPGVGVGVLGTA--------IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
LIP TPG G +G A IGP+GP P+GP GP++P P GP+GP P P
Sbjct: 48 LIPR-TPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFC 106
Query: 524 P 524
P
Sbjct: 107 P 107
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 55.8 bits (133), Expect = 1e-07
Identities = 44/121 (36%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 466 ATEAPGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
A A G S P G G A +GP GP GP GP P G GP G TGPA
Sbjct: 858 APGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAG 917
Query: 524 PPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFI--QQMVQALAGANA----PQLPN 577
PG G GP GP +P + P Q I Q+ V L G P LP
Sbjct: 918 RPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG 977
Query: 578 P 578
P
Sbjct: 978 P 978
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
A GPVGP G G P P GP+GP+G GPA P G G G TG
Sbjct: 1053 APGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETG 1100
Score = 49.7 bits (117), Expect = 8e-06
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G GP P GP GP P +G G G G A PPG+TG G G V PS
Sbjct: 834 AKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG-RVGPPGPSGNA 892
Query: 548 SPTSESGP 555
P GP
Sbjct: 893 GPPGPPGP 900
Score = 47.8 bits (112), Expect = 3e-05
Identities = 27/76 (35%), Positives = 34/76 (44%)
Query: 470 PGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
PGL +F P + G + G + P+GP GP P G GP G GP PG G
Sbjct: 153 PGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG 212
Query: 530 SGGPTGPTVSSAAPSE 545
+ GP GP P +
Sbjct: 213 ASGPMGPRGPPGPPGK 228
Score = 47.0 bits (110), Expect = 5e-05
Identities = 26/66 (39%), Positives = 27/66 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G VGP G G P P GP G G GPA PG G GP GP + P E P
Sbjct: 605 GAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664
Query: 550 TSESGP 555
P
Sbjct: 665 GDLGAP 670
Score = 46.6 bits (109), Expect = 7e-05
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GV L IGP GP G G GP GP GPTG PG G GP GP +
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKG------ESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 541 AAPSETTSPTSESGP 555
P P ++ P
Sbjct: 815 GPPGADGQPGAKGEP 829
Score = 46.2 bits (108), Expect = 9e-05
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP P GPIG + G G GP G PG+ G GP GP+ +A P P
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS-GNAGPPGPPGP 900
Query: 550 TSESG 554
+ G
Sbjct: 901 AGKEG 905
Score = 45.8 bits (107), Expect = 1e-04
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG----------------SG- 531
+GP G G GP P P+GP+G GP GP P G G SG
Sbjct: 1057 VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 1116
Query: 532 -GPTGPTVS--SAAPSETTSPTSESGP 555
GP GP S PS + P GP
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGP 1143
Score = 45.4 bits (106), Expect = 2e-04
Identities = 39/107 (36%), Positives = 42/107 (39%), Gaps = 26/107 (24%)
Query: 466 ATEAPGLI--PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPI----VPFTP---------- 509
A APG+ P F PG A GP GP P GP GP P P
Sbjct: 399 ANGAPGIAGAPGF-PG--------ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKG 449
Query: 510 -IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP+G GP GPA G G+ G GPT P E P S P
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Score = 45.1 bits (105), Expect = 2e-04
Identities = 30/85 (35%), Positives = 35/85 (41%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P GP GP G G GP GP PPG G GG P +S ++T
Sbjct: 115 GDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGG 174
Query: 550 TSESGPNQQFIQQMVQALAGANAPQ 574
S GP + + GA PQ
Sbjct: 175 ISVPGPMGPSGPRGLPGPPGAPGPQ 199
Score = 44.3 bits (103), Expect = 3e-04
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G G A P P P P GP+ P G G GP GPA P G G+ GP GP
Sbjct: 1037 GETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 543 PSET 546
ET
Sbjct: 1096 KGET 1099
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/60 (38%), Positives = 25/60 (41%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G GP+ P P GP G G G A PG G GP GP + P P
Sbjct: 203 GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLP 262
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A+G G P GP G P G GP GP G A P G+ G+ G G ++ AP
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 548 SP 549
+P
Sbjct: 408 AP 409
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/58 (41%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 488 AIGPVGPVTPIGPIGPIV---------PFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
A GP GP P G G P P GP G G GP PPG G GP GP
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 41.2 bits (95), Expect = 0.003
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 497 PIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG 531
PIGP GP GP+GP GP GP PPG +G
Sbjct: 1161 PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/60 (35%), Positives = 23/60 (38%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
GP G + P G G GP GPA P G G GP G P P P +Q
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 661
Score = 40.8 bits (94), Expect = 0.004
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTG---------PAAPPGSTGSGGPTGPTV 538
A+GP G G GP P P G G GP G PA PPG G G G
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665
Query: 539 SSAAPSETTSPTSESGPNQQFIQ 561
AP + + P ++ +Q
Sbjct: 666 DLGAPGPSGARGERGFPGERGVQ 688
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G G P GP GP GP G A PG G G GP + P T
Sbjct: 1115 GLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP-IGPPGPRGRTGD 1173
Query: 550 TSESGP 555
GP
Sbjct: 1174 AGPVGP 1179
Score = 40.4 bits (93), Expect = 0.005
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 488 AIGPVGPVTPIGP------IGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSA 541
A GP GP P GP +G P GP G GP G PG G G GP +
Sbjct: 330 AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG 389
Query: 542 APSETTSPTSESGP 555
A + + + P
Sbjct: 390 ADGQPGAKGANGAP 403
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
G GP+ P GP G P+GP GP GP GP PP +
Sbjct: 1157 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
Score = 40.0 bits (92), Expect = 0.006
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET--- 546
G G G G P P GP GP GP G PG+ G+ G GP ++ P
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV 883
Query: 547 --TSPTSESGP 555
P+ +GP
Sbjct: 884 GPPGPSGNAGP 894
Score = 40.0 bits (92), Expect = 0.006
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPIVP-----------FTPI-GPIGPIGPTGPAAPP 525
P VG +G A GP GP P G G F+ + GP GP G G P
Sbjct: 1074 PAGPVGPVG-ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPS 1132
Query: 526 GSTGSGGPTGPTVSSAAPSE 545
G++G GP GP S+ AP +
Sbjct: 1133 GASGPAGPRGPPGSAGAPGK 1152
Score = 39.7 bits (91), Expect = 0.008
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 490 GPVGPVTPIGPIG-------PIVPFTP--------IGPIGPIGPTGPAAPPGSTGSGGPT 534
GP+GP GP G P +P G G GP GP PG+ G+ GP
Sbjct: 998 GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV 1057
Query: 535 GPTVSSAAPSETTSPTSESGP 555
GP S E T P +GP
Sbjct: 1058 GPAGKSGDRGE-TGPAGPAGP 1077
Score = 39.3 bits (90), Expect = 0.011
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G GP P GP GP P P G +G G A P G GS GP G P
Sbjct: 327 ATGAAGPPGPTGPAGP--PGFP----GAVGAKGEAGPQGPRGSEGPQGVRGEPGPP---- 376
Query: 548 SPTSESGP 555
P +GP
Sbjct: 377 GPAGAAGP 384
Score = 39.3 bits (90), Expect = 0.011
Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGP------IGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
G GP GP GP P G G GP GP P G TG GP GP P
Sbjct: 1127 GEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186
Query: 544 SETTSPTSESGPNQQFIQQMVQALA 568
P+ +G + F+ Q Q A
Sbjct: 1187 GPPGPPS--AGFDFSFLPQPPQEKA 1209
Score = 38.9 bits (89), Expect = 0.014
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G GP GP GP+GP G A PPG +G G G + +P SP
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG---AEGSPGRDGSP 1030
Query: 550 -----TSESGP 555
E+GP
Sbjct: 1031 GAKGDRGETGP 1041
Score = 37.4 bits (85), Expect = 0.042
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G G P GP GP GP G G+ G GP GP S P
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR-GSEGPQGVRGE 372
Query: 550 TSESGP 555
GP
Sbjct: 373 PGPPGP 378
Score = 37.4 bits (85), Expect = 0.042
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P F VG GP G P G G P P G GP G G PG+ G+ G
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 402
Query: 534 TGPTVSSAAPSETTSPTSESGP 555
G + P P+ GP
Sbjct: 403 PGIAGAPGFPG-ARGPSGPQGP 423
Score = 37.0 bits (84), Expect = 0.054
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP G G P GP G GP G PG+ G G G A P P
Sbjct: 788 GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG-AKGDAGPPGPAGP 846
Query: 550 TSESGP 555
GP
Sbjct: 847 AGPPGP 852
Score = 36.6 bits (83), Expect = 0.071
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP GP GP GP G G A PG G G G T S +P P ++GP
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP----GPDGKTGP 555
Score = 36.6 bits (83), Expect = 0.071
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTG------------PAAPPGSTGSGGPTGPT 537
G GP+ P GP G GP GP GPTG P P G G G G
Sbjct: 764 GLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQP 823
Query: 538 VSSAAPSET-----TSPTSESGP 555
+ P + P +GP
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGP 846
Score = 36.2 bits (82), Expect = 0.093
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G P G G GP GP GP GP PG+ G+ G GP
Sbjct: 311 GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGP 357
Score = 35.8 bits (81), Expect = 0.12
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
GP G P P GP GP G G PG G GP GP
Sbjct: 112 GPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGP 149
Score = 35.8 bits (81), Expect = 0.12
Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTG----PAAP---- 524
+P G L A G GP P G G G +GP G G P AP
Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320
Query: 525 ----PGSTGSGGPTGPTVSSAAPS--ETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
G+TG+ GP GPT + P E+GP + Q + G P P
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGP 378
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/101 (32%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 474 PSFTPGV--GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGP---------- 521
P+ PG VG G A GP GP GP G P GP G GP G
Sbjct: 339 PAGPPGFPGAVGAKGEA-GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Query: 522 --------AAPPGSTGSGGPTGPTVSSAAPSETTSPTSESG 554
A PG G+ GP+GP P P SG
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGP----QGPGGPPGPKGNSG 434
Score = 35.0 bits (79), Expect = 0.21
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 509 PIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPN 556
P GP G G GPA P GS G G G A T SP S GP+
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS-PGPD 550
Score = 34.7 bits (78), Expect = 0.27
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGS------------GGPTG 535
A G GPV GP GP G G GPTG PPG G GP G
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506
Query: 536 PTVSSAAP 543
P +P
Sbjct: 507 PAGERGSP 514
Score = 34.7 bits (78), Expect = 0.27
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETT 547
GP G GP GP G +G GP G A PG G G GP V A
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 616
Query: 548 SPTSESGPNQQFIQQMVQALAGANAPQ-LPNP 578
GP ++ Q AG+ Q LP P
Sbjct: 617 GAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648
Score = 34.7 bits (78), Expect = 0.27
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGP 518
G+ L IGP GP G GP+ P P GP GP GP
Sbjct: 1154 GLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 33.9 bits (76), Expect = 0.46
Identities = 29/93 (31%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
Query: 488 AIGPVGPVTPIGPIGPI-------VPFTPIGPIGPIGPTGPAAPPGST------------ 528
A GP+GP P GP G P P G GP GP G PG+
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKPGRP-GERGPPGPQGARGLPGTAGLPGMKGHRGFS 271
Query: 529 ------GSGGPTGPTVSSAAPSETTSPTSESGP 555
G GP GP +P E +P + GP
Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAP-GQMGP 303
Score = 33.9 bits (76), Expect = 0.46
Identities = 22/60 (36%), Positives = 23/60 (38%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G G GP GPA GS G GP G + P E P
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS---TGSGGPTGPTVSSAAP 543
A G GP P G G P P G G G G A PG+ TGS G GP + P
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPP 556
Score = 33.1 bits (74), Expect = 0.79
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 509 PIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPN 556
P G G GP G PG G G TGP + P+ ESGP+
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGP-IGPPGPAGAPGDKGESGPS 787
Score = 32.7 bits (73), Expect = 1.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGP 536
G GP G TGP P G G GP GP
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGP 570
Score = 32.7 bits (73), Expect = 1.0
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPI-VPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPTVS 539
GV+G GP G G G VP P +GP G G G PPG G G G
Sbjct: 578 GVMGFP-GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP 636
Query: 540 SAAPSETTSPTSESGPNQ 557
+ +P P P +
Sbjct: 637 AGSPGFQGLPGPAGPPGE 654
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G G GP GPA P G+ G+ G G + AP +P S+ P Q
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG---APGSQGAPGLQ 727
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
G GP P GP G G GP PPG+ G G G
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG 581
Score = 32.3 bits (72), Expect = 1.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G GP GP GP G+ G+ G G + AP +P + P ++
Sbjct: 686 GVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGER 733
Score = 32.3 bits (72), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
+GP GP P G G P G G GP G A G G G G P +
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 549 PTSESGPN 556
P + GP+
Sbjct: 982 P-GKQGPS 988
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 474 PSFTPGV----GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P +PG G L A G G GP G P P G G GP GP G G
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Query: 530 SGGPTGPTVSSAAPSE 545
G GP ++ P +
Sbjct: 579 VMGFPGPKGAAGEPGK 594
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGP---------TGPAAPPGSTGSGGPTGPTVSS 540
GP GP G GP P G G G TG PG G GP GP
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 562
Query: 541 AAPSETTSP 549
P P
Sbjct: 563 GRPGPPGPP 571
Score = 31.6 bits (70), Expect = 2.3
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG---SGGPTGPTVSSAAPSET 546
GP GP G G +G GP G G PG G GP GP ++ AP
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 547 TSPTSESGPNQQFIQQM--VQALAG-ANAPQLPNPE 579
+ P Q +Q + G A LP P+
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 17/159 (10%)
Query: 470 PGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
PGLI P G G GP G P G G P PIGP GP G GP P G+
Sbjct: 1485 PGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGA 1544
Query: 528 TGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQM-VQALAGANAPQLPNPEVRFQQQL 586
GS GPTGP + P P GP + IQ + +QA + Q L
Sbjct: 1545 KGSSGPTGPKGEAGHP----GPPGPPGPPGEVIQPLPIQA-------SRTRRNIDASQLL 1593
Query: 587 EQLNAMGFLNREANLQALIATGGDINAAIERL---LGSQ 622
+ N +++ ++ + + + IE++ LG+Q
Sbjct: 1594 DDGNGENYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTQ 1632
Score = 49.7 bits (117), Expect = 8e-06
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS- 548
G GP P GP G P GP+G G GP PG G GP G P +T S
Sbjct: 1318 GAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377
Query: 549 -PTSESGPN 556
PT E GP+
Sbjct: 1378 GPTGEPGPS 1386
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 490 GPVGPVTP------------IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
GP GP P +GP G P G +GP GP GP PPG TG G GP
Sbjct: 649 GPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPK 708
Query: 538 VSSAAPSETTSPTSESGPNQQ 558
+ E P + P Q
Sbjct: 709 GNVGPQGEPGPPGQQGNPGAQ 729
Score = 45.4 bits (106), Expect = 2e-04
Identities = 33/89 (37%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 482 VGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIG------PIGPTGPAAPPGSTGSGGP 533
VG LG GP GP P G G P GPIG P GP GPA G+ G GP
Sbjct: 1068 VGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGP 1127
Query: 534 TGPT--------VSSAAPSETTSPTSESG 554
GP V P+ P E G
Sbjct: 1128 QGPAGRDGLQGPVGLPGPAGPVGPPGEDG 1156
Score = 45.1 bits (105), Expect = 2e-04
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE---- 545
GP GP GP GP P GP GP GP G PG G G TG + P
Sbjct: 940 GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVV 999
Query: 546 -TTSPTSESGP 555
PT E+GP
Sbjct: 1000 GPQGPTGETGP 1010
Score = 45.1 bits (105), Expect = 2e-04
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 440 PDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIG 499
P PR Q L Q+G E P P VG+ L G G +G
Sbjct: 1193 PSGADGEPGPRGQQGLFG-QKG-----DEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVG 1246
Query: 500 PIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP--TSESGP 555
+GP P P GP G G GP PPG G+ G G P E P E GP
Sbjct: 1247 QMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVG---EKGEPGEAGEPGLPGEGGP 1301
Score = 44.7 bits (104), Expect = 3e-04
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GPV G GP P G GP G G PG TGS GPTG S P + P
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGK-RGP 1394
Query: 550 TSESGPNQQFIQQMVQALAGANAP 573
+GP + ++ + AG P
Sbjct: 1395 PGPAGPEGRQGEKGAKGEAGLEGP 1418
Score = 43.9 bits (102), Expect = 4e-04
Identities = 23/66 (34%), Positives = 27/66 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G +GP P GP+G G GP PPG G G G + P P
Sbjct: 988 GKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLP 1047
Query: 550 TSESGP 555
+ P
Sbjct: 1048 GKDGPP 1053
Score = 43.5 bits (101), Expect = 6e-04
Identities = 26/59 (44%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP---PGSTGSGGPTGPTVSSAAPSE 545
GPVG + G GP P P G G GP G A P PG G GP GP AP E
Sbjct: 1066 GPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGE 1124
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G VG + P GP GP P G GP GP G PG+ G G G P E P
Sbjct: 1243 GDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP 1302
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
GP + ++ +GA P P
Sbjct: 1303 ----GPKGERGEKGESGPSGAAGPPGP 1325
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/82 (36%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPP------------GSTGSGGPTGP- 536
G G P GP G P P GP G GP GP PP G TG G TGP
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPP 993
Query: 537 ----TVSSAAPSETTSPTSESG 554
V P+ T P E G
Sbjct: 994 GPPGVVGPQGPTGETGPMGERG 1015
Score = 41.2 bits (95), Expect = 0.003
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
+GP G GP G + P P GP GP G TG PG G+ GP G P + +
Sbjct: 669 VGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQG---EPGPPGQQGN 725
Query: 549 PTSESGPNQQ 558
P ++ P Q
Sbjct: 726 PGAQGLPGPQ 735
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/89 (31%), Positives = 32/89 (35%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G V P GP G P G GP GP G PG G G G + P + P
Sbjct: 994 GPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPP 1053
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLPNP 578
P + + V AL P P
Sbjct: 1054 GLRGFPGDRGLPGPVGALGLKGNEGPPGP 1082
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G G P G GP GP GP G GS GP G P E P
Sbjct: 1297 GEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGE-PGP 1355
Query: 550 TSESGP 555
+ GP
Sbjct: 1356 AGQDGP 1361
Score = 40.4 bits (93), Expect = 0.005
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVS---------- 539
GP GP P G GP P G +G G GP PG G+ G GP +
Sbjct: 469 GPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGG 528
Query: 540 -SAAPSETTSPTSESGPNQQFIQQMVQALAGANAP 573
A S+ +++ Q +QQ AL G P
Sbjct: 529 GGDAGSKGPMVSAQESQAQAILQQARLALRGPAGP 563
Score = 40.0 bits (92), Expect = 0.006
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP--SETT 547
GP G PIGP G P G G GP G PGS G GP GP P +
Sbjct: 1417 GPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDS 1476
Query: 548 SPTSESG 554
P E G
Sbjct: 1477 GPKGEKG 1483
Score = 39.7 bits (91), Expect = 0.008
Identities = 22/54 (40%), Positives = 22/54 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP G GP G P GP G GP GP P G G GP GP P
Sbjct: 922 GPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLP 975
Score = 39.7 bits (91), Expect = 0.008
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GPV GP GP+ P G G IG G G G GP GPT P P
Sbjct: 1135 GLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPT-GPQGPIGQPGP 1193
Query: 550 TSESGPNQQFIQQMVQALAGANAPQ-LPNP 578
+ G QQ + G P+ P P
Sbjct: 1194 SGADGEPGPRGQQGLFGQKGDEGPRGFPGP 1223
Score = 38.5 bits (88), Expect = 0.019
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G+LG GP GP P G G P G +GP G GP G+ G+ G GP +
Sbjct: 682 GLLGPK-GPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGP 740
Query: 543 PSE 545
P E
Sbjct: 741 PGE 743
Score = 38.5 bits (88), Expect = 0.019
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET--T 547
GP GP G GP+ P GP+GP G G G G G G P T
Sbjct: 1126 GPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQ 1185
Query: 548 SPTSESGPN 556
P + GP+
Sbjct: 1186 GPIGQPGPS 1194
Score = 38.5 bits (88), Expect = 0.019
Identities = 22/56 (39%), Positives = 23/56 (41%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
GP G P GP G P P GP G G G G G G TGP AP +
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGK 1433
Score = 38.1 bits (87), Expect = 0.024
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIV---PFTPIGPIGPIGPTGPAAPPGSTGS 530
P F +G+ IGP GP GP GP P GP+GP G G PG G
Sbjct: 816 PGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGY 875
Query: 531 GGPTGPTVSSAAP 543
G GP S P
Sbjct: 876 PGRQGPKGSIGFP 888
Score = 38.1 bits (87), Expect = 0.024
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA------APPGS 527
P+ +PG G G A GP+G GP GP P G G GP GPA P G
Sbjct: 1085 PAGSPGER-GPAGAA-GPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGL 1142
Query: 528 TGSGGPTGPTVSSAAPSETTSP 549
G GP GP E P
Sbjct: 1143 PGPAGPVGPPGEDGDKGEIGEP 1164
Score = 38.1 bits (87), Expect = 0.024
Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 490 GPVGPVTPIGPIGPIVPFT---------------PIGPIGPIGPTGPAAPPGSTGSGGPT 534
GP GP GP GP P P G GPIGP G PG G G
Sbjct: 1384 GPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIP 1443
Query: 535 GPTVSSAAPSETTSPTSESGP 555
GP P + P GP
Sbjct: 1444 GPVGEQGLPG-SPGPDGPPGP 1463
Score = 37.7 bits (86), Expect = 0.032
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
P +G+ G GPVGP G G P GP G GP GPA PG G G G
Sbjct: 560 PAGPMGLTGRP-GPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDG 616
Score = 37.7 bits (86), Expect = 0.032
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P GP G P G GP G +G P G G GP GP P+ P
Sbjct: 907 GPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGP----QGPTGFPGP 962
Query: 550 TSESGP 555
GP
Sbjct: 963 KGPPGP 968
Score = 37.7 bits (86), Expect = 0.032
Identities = 29/92 (31%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE---- 545
GP GP PIG GP GP G G G G G GP GP P
Sbjct: 1180 GPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEK 1239
Query: 546 -TTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
T + GP + GA+ PQ P
Sbjct: 1240 GETGDVGQMGPPGPPGPRGPSGAPGADGPQGP 1271
Score = 37.4 bits (85), Expect = 0.042
Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGP---------TGPAAPPGSTGSGGPTGPTVSS 540
G G P G GP P GP G G GPA PPG G GP GPT
Sbjct: 901 GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPT-GF 959
Query: 541 AAPSETTSPTSESG 554
P P + G
Sbjct: 960 PGPKGPPGPPGKDG 973
Score = 37.4 bits (85), Expect = 0.042
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIG---------PIGPTGPAAPPGSTGSGGPTGPTVSS 540
GP+GP G GP GP+G P GP GP PPG G G +GP
Sbjct: 1423 GPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEK 1482
Query: 541 AAP 543
P
Sbjct: 1483 GHP 1485
Score = 36.2 bits (82), Expect = 0.093
Identities = 33/96 (34%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIV------------PFTPIGPIGPIGPTGP 521
P PGV G+ G GP G V P G GP P IGP G GP G
Sbjct: 692 PPGPPGV-TGMDGQP-GPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGK 749
Query: 522 AAPPGSTGSGGPTGPTVSSAAPSET--TSPTSESGP 555
PG G+ GP G P E P GP
Sbjct: 750 PGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Score = 36.2 bits (82), Expect = 0.093
Identities = 22/68 (32%), Positives = 25/68 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G G GP P GP G GP GPA P G G G G P +T
Sbjct: 1366 GDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPI 1425
Query: 550 TSESGPNQ 557
+ P +
Sbjct: 1426 GPQGAPGK 1433
Score = 35.8 bits (81), Expect = 0.12
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 502 GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP--TVSSAAPSETTSPTSESG 554
GP+ G GP GP GPA PG G G GP P P E G
Sbjct: 1066 GPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKG 1120
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP GP+ G GP+ P G G G GP P G G GP G
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAG 604
Score = 35.4 bits (80), Expect = 0.16
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G GP P G G P GP GP+GP G G G G G +
Sbjct: 1121 APGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKG-SKGDKGEQGPP 1179
Query: 548 SPTSESGP 555
PT GP
Sbjct: 1180 GPTGPQGP 1187
Score = 35.4 bits (80), Expect = 0.16
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
PS PG A GP GP IG G + G G G G PPG G G
Sbjct: 1259 PSGAPG--------ADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGE 1310
Query: 534 TGPTVSS--AAPSETTSPTSESGP 555
G + S A P P + GP
Sbjct: 1311 KGESGPSGAAGPPGPKGPPGDDGP 1334
Score = 35.4 bits (80), Expect = 0.16
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 490 GPVG----PVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
GPVG P +P GP GP P P G G G +GP G G G GP +
Sbjct: 1444 GPVGEQGLPGSP-GPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGD 1502
Query: 546 --TTSPTSESGP-NQQFIQQMVQALAGANAPQLPNP 578
P SGP +Q I + P LP P
Sbjct: 1503 RGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP 1538
Score = 35.0 bits (79), Expect = 0.21
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 469 APGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
APG P G+G G A+G G G G P GP G G G + P G+
Sbjct: 1262 APGADGPQGPPGGIGNPG-AVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAA 1320
Query: 529 GSGGPTGP 536
G GP GP
Sbjct: 1321 GPPGPKGP 1328
Score = 34.7 bits (78), Expect = 0.27
Identities = 33/94 (35%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 467 TEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
T PG P PG G G+ G G VGP P G GP P G G G G PG
Sbjct: 567 TGRPG--PVGPPGSG-GLKGEP-GDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPG 622
Query: 527 STGSGGPTGPTVSSAAPSE-----TTSPTSESGP 555
TG G G + P E P+ GP
Sbjct: 623 QTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656
Score = 34.3 bits (77), Expect = 0.35
Identities = 17/48 (35%), Positives = 18/48 (37%)
Query: 502 GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP P G GP+GP G G G GP GP P P
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKP 606
Score = 34.3 bits (77), Expect = 0.35
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
G IGP GP G P G G GGP G P E
Sbjct: 829 GEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGE 863
Score = 33.9 bits (76), Expect = 0.46
Identities = 21/65 (32%), Positives = 23/65 (35%)
Query: 493 GPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSE 552
GP P+G G P P G G G G P G G GP GP S +
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGAR 618
Query: 553 SGPNQ 557
P Q
Sbjct: 619 GMPGQ 623
Score = 32.3 bits (72), Expect = 1.3
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS- 548
GP GP G G P P G G GP G P G G G G P + S
Sbjct: 1111 GPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSK 1170
Query: 549 -PTSESGP 555
E GP
Sbjct: 1171 GDKGEQGP 1178
Score = 31.2 bits (69), Expect = 3.0
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 490 GPVGPVTPIGPIGPI----VPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
GP G P+GP G VP P G G GP G PG G+ G G + P
Sbjct: 850 GPNGDPGPLGPPGEKGKLGVPGLP-GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGP 908
Query: 546 -----TTSPTSESGP 555
T P E GP
Sbjct: 909 RGQRGPTGPRGERGP 923
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G GP+GP PPG G G G P E P GP
Sbjct: 643 GHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGE-PGPRGLLGP 686
Score = 30.8 bits (68), Expect = 3.9
Identities = 20/48 (41%), Positives = 21/48 (43%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
A GP G GP G P GP GPIG GP G+ G G G
Sbjct: 758 ADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKG 805
Score = 30.4 bits (67), Expect = 5.1
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 490 GPVGPVTPIGPIG-PIVPFTP--------IGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G +GP GP+G P +P P G GP G G PPG G G GP
Sbjct: 736 GAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGP 791
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 54.7 bits (130), Expect = 3e-07
Identities = 40/115 (34%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 488 AIGPVGPVTPIGPIGPIVPF---------TPIGPIGP---IGPTGPAAPPGSTGSGGPTG 535
A GP GP P GP GP+ P PIGP GP G TGPA PPG+ G GP G
Sbjct: 1153 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Query: 536 PTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLN 590
P P S + GP ++ + A A L + L+ LN
Sbjct: 1213 P----PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLN 1263
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/144 (31%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPT---------GPAAPPGSTGSGGPTGPTVSS 540
GP GP G GP P P GP GP+GP+ GP PPG G G TGP
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP---- 1198
Query: 541 AAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREAN 600
A P P GP I + A AG P+ P+ + +Q A G +A
Sbjct: 1199 AGPPGNPGPPGPPGPPGPGID--MSAFAGL-GPREKGPDPLQYMRADQA-AGGLRQHDAE 1254
Query: 601 LQALIATGGDINAAIERLLGSQPS 624
+ A + + +N IE + + S
Sbjct: 1255 VDATLKS---LNNQIESIRSPEGS 1275
Score = 47.4 bits (111), Expect = 4e-05
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET--T 547
G GP P G G P P GP GP GP GP+ G+ G GP GP ET
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1199
Query: 548 SPTSESGP 555
P GP
Sbjct: 1200 GPPGNPGP 1207
Score = 46.6 bits (109), Expect = 7e-05
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP+ P GP G +GP GP G G PG G GP GP + P P
Sbjct: 786 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 845
Query: 550 -----TSESGPNQQFIQQMVQALAGANAPQLP 576
E+G Q +GA PQ P
Sbjct: 846 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 877
Score = 46.2 bits (108), Expect = 9e-05
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 476 FTPGVGVGVLGTAIGPVGPVTPIGPIGPI-------------VPFTPIGPIGPIGPTGPA 522
F G LG GP+GP+ P GP GP P P G GP+GP GP
Sbjct: 187 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP-GVSGPMGPRGPP 245
Query: 523 APPGSTGSGGPTG 535
PPG G G G
Sbjct: 246 GPPGKPGDDGEAG 258
Score = 46.2 bits (108), Expect = 9e-05
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 479 GVGVGVLGTAIGPVGPVTPIGPIG----------PIVPFTP--IGPIGPIGPTGP----- 521
G +GV+ +GP+GP P GP G P P P GP+GP GP GP
Sbjct: 193 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 252
Query: 522 ----AAPPGSTGSGGPTGPTVSSAAPSETTSP 549
A PG G GP GP + P P
Sbjct: 253 DDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 284
Score = 45.1 bits (105), Expect = 2e-04
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG---GPTGPTVSSAAPS 544
A G VGP G GP P P G GP G G + PPG G GP GP P
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 960
Query: 545 ETTSPTSESGPNQQFI--QQMVQALAGANA----PQLPNP 578
+ +E P Q + Q+ + L G P LP P
Sbjct: 961 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP 1000
Score = 42.7 bits (99), Expect = 0.001
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G G P GP GP+GP G PG+ G+ G GPT + P P
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT-GARGPEGAQGP 391
Query: 550 TSESG 554
E G
Sbjct: 392 RGEPG 396
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 482 VGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSA 541
VG G A GP G P GP G G GP+GP+GPA G G GP G +
Sbjct: 1064 VGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 542 APSE 545
P E
Sbjct: 1123 EPGE 1126
Score = 42.0 bits (97), Expect = 0.002
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP GP G P G G G G PPGS G+ GP GP PS
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP----PGPSGKD 926
Query: 548 SP---TSESGPNQQFIQQMVQALAG 569
P +SGP + + +Q AG
Sbjct: 927 GPKGARGDSGPPGRAGEPGLQGPAG 951
Score = 42.0 bits (97), Expect = 0.002
Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 470 PGLI-PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
PGL PS PG G G A G GP P+GP G P G G G GP G+
Sbjct: 995 PGLPGPSGEPGKQ-GAPG-ASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 1052
Query: 529 GSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPN 577
G G G T + AP P GP +Q + AGA P P+
Sbjct: 1053 GVKGDRGETGAVGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1100
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/68 (36%), Positives = 27/68 (39%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G G G P P G GP GPTG P G+ G+ GP G T A
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Query: 548 SPTSESGP 555
P S P
Sbjct: 907 PPGSNGNP 914
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP GP GP P G G GP G PG+ G GP G + P
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN-GNPGPPGPP 920
Query: 548 SPTSESGP 555
P+ + GP
Sbjct: 921 GPSGKDGP 928
Score = 38.5 bits (88), Expect = 0.019
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG-SGGPTGP----TVSSAAPS 544
GP+GP G G P G G G GPA PPG G +GGP P A P+
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 380
Query: 545 ETTSPTSESGP 555
P GP
Sbjct: 381 GARGPEGAQGP 391
Score = 38.5 bits (88), Expect = 0.019
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G +GPIGP G PG+ G G G AP E P
Sbjct: 477 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE-RGP 535
Query: 550 TSESGP 555
+ +GP
Sbjct: 536 SGLAGP 541
Score = 38.1 bits (87), Expect = 0.024
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPI------------------GPIGPIGPTGPAAPPGSTGSG 531
GP GP P G GP+ P GP GP G GPA G G+
Sbjct: 435 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Query: 532 GPTGPTVSSAAPSETTSPTSESGPNQ 557
G G P E +P + P Q
Sbjct: 495 GEPGGVGPIGPPGERGAPGNRGFPGQ 520
Score = 37.4 bits (85), Expect = 0.042
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA---APPGSTGSGGPTGP 536
G + +GP GP P GP G P G G G GP PG+ G+ GP GP
Sbjct: 110 GDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 166
Score = 37.4 bits (85), Expect = 0.042
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G P GP GP+ P G G G G A P G+ G G GP P
Sbjct: 343 ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 402
Query: 548 SPTSESGPNQQFI---QQMVQALAGANAPQLPNP 578
+ P I + A A AP P P
Sbjct: 403 PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 436
Score = 36.6 bits (83), Expect = 0.071
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 485 LGTAIGPVGPVTPIGP-------IGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG-- 535
L TA G GP G +GP P P GP G GP G G G+ GP G
Sbjct: 93 LATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD 152
Query: 536 ---PTVSSAAPSETTSPTSESGPNQQFIQQM 563
T + P P G F QM
Sbjct: 153 GEPGTPGNPGPPGPPGPPGPPGLGGNFAAQM 183
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G G A P P P GP GP P+GP G G G A G G G GP A
Sbjct: 423 GAPGIAGAPGFP-GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP----AG 477
Query: 543 PSETTSPTSESG 554
P P E G
Sbjct: 478 PQGAPGPAGEEG 489
Score = 36.6 bits (83), Expect = 0.071
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G P GP GP G GP G G PPG G GG G P E +P
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG---DQGVPGEAGAP 692
Score = 36.2 bits (82), Expect = 0.093
Identities = 23/64 (35%), Positives = 24/64 (37%)
Query: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
IP G + A G GP P GP G P P G G G G G G G
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 533 PTGP 536
P GP
Sbjct: 475 PAGP 478
Score = 35.8 bits (81), Expect = 0.12
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGA 570
G G GP GPA P G G G GP+ P P P Q + A
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP------GEA 689
Query: 571 NAPQLPNP 578
AP L P
Sbjct: 690 GAPGLVGP 697
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP P G G P GP G G GP PPG G G G + AP
Sbjct: 640 AAGPPGPAGPAGERGE--QGAP-GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG-LV 695
Query: 548 SPTSESG 554
P E G
Sbjct: 696 GPRGERG 702
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG------GPTGPTVSSA 541
A G GP G +G P G G G TGP PPG G+ GP GP SA
Sbjct: 757 AAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP-AGSA 815
Query: 542 APSETTSPTSESGP 555
E+GP
Sbjct: 816 GARGAPGERGETGP 829
Score = 35.8 bits (81), Expect = 0.12
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE--TT 547
GP G G G P P GP G G G PPG GS G G AP E T
Sbjct: 774 GPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARG------APGERGET 827
Query: 548 SPTSESG 554
P +G
Sbjct: 828 GPPGPAG 834
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/57 (33%), Positives = 20/57 (35%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G P P GP G G G P G G GP GP P + P P
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 692
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/114 (28%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 466 ATEAPGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPT---- 519
A APG S P G G G GP+ P GP G P GP G G
Sbjct: 1066 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125
Query: 520 -----------------GPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPN 556
GP P G G+ GP GP+ P P+ + G N
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKDGAN 1178
Score = 35.0 bits (79), Expect = 0.21
Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 490 GPVGPVTPIGPIGPIVP---------------FTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
GP G P GP G P P G G +G GP PG G G T
Sbjct: 729 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 788
Query: 535 GPTVSSAAPSETTSPTSESGP 555
GP + P+ E GP
Sbjct: 789 GP-IGPPGPAGANGEKGEVGP 808
Score = 35.0 bits (79), Expect = 0.21
Identities = 21/62 (33%), Positives = 23/62 (37%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A+G G P G GP P G G G GP P G G+ G GP E
Sbjct: 1063 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 548 SP 549
P
Sbjct: 1123 EP 1124
Score = 34.7 bits (78), Expect = 0.27
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 478 PGVGVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
P G G G A G GP GP G P G G GP G + PG+ G G G
Sbjct: 361 PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 420
Query: 536 ----PTVSSA----APSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPE 579
P ++ A P P +GP Q +AG Q P E
Sbjct: 421 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGE 472
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
A G G G +G P G GP GPTG G G+ GP GP+ + A
Sbjct: 1051 AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Score = 34.3 bits (77), Expect = 0.35
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 490 GPVG-PVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
GP G P TP G GP P GP G GP G PG G+ G GP
Sbjct: 717 GPRGLPGTP-GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 763
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/72 (31%), Positives = 24/72 (33%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP G G P G GP GP G PG G G G E P
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Query: 550 TSESGPNQQFIQ 561
P Q +Q
Sbjct: 705 GERGSPGAQGLQ 716
Score = 33.1 bits (74), Expect = 0.79
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
G GP G GP+ PG G GP GP + P
Sbjct: 567 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/62 (35%), Positives = 24/62 (38%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G V PIGP G G G G GP PG G G GP ++ P
Sbjct: 493 ARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 552
Query: 548 SP 549
P
Sbjct: 553 EP 554
Score = 31.6 bits (70), Expect = 2.3
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 470 PGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPI-VPFTPIGPIGPIGPTGPAAPPGST 528
PGL + GV G + P +P GP+GP +P G G GP G A G+
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSP-GPMGPRGLP----GERGRTGPAGAAGARGND 347
Query: 529 GSGGPTGP 536
G GP GP
Sbjct: 348 GQPGPAGP 355
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/66 (31%), Positives = 23/66 (34%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G G P G GP GP G A G G G G P + P
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 1004
Query: 550 TSESGP 555
+ P
Sbjct: 1005 GKQGAP 1010
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/60 (33%), Positives = 22/60 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G VGP+ P G G G G GP G G +G GP G P E P
Sbjct: 498 GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 557
Score = 30.0 bits (66), Expect = 6.7
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP G V P G G G GP GP G PG G GP G
Sbjct: 570 GPQGKVGPSGAPG------EDGRPGPPGPQGARGQPGVMGFPGPKG 609
Score = 29.6 bits (65), Expect = 8.7
Identities = 19/58 (32%), Positives = 23/58 (39%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
A G G GP G + P G G GP GP G G G GP ++ P +
Sbjct: 559 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 616
Score = 29.6 bits (65), Expect = 8.7
Identities = 29/89 (32%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 469 APGLIPSFTPGVGVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
APGL+ G G+ A G GP G G P GP GP G GP G
Sbjct: 691 APGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750
Query: 527 STGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G G A P E GP
Sbjct: 751 MPGERGAAG----IAGPKGDRGDVGEKGP 775
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 54.7 bits (130), Expect = 3e-07
Identities = 40/115 (34%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 488 AIGPVGPVTPIGPIGPIVPF---------TPIGPIGP---IGPTGPAAPPGSTGSGGPTG 535
A GP GP P GP GP+ P PIGP GP G TGPA PPG+ G GP G
Sbjct: 1084 ASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1143
Query: 536 PTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLN 590
P P S + GP ++ + A A L + L+ LN
Sbjct: 1144 P----PGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLN 1194
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/144 (31%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPT---------GPAAPPGSTGSGGPTGPTVSS 540
GP GP G GP P P GP GP+GP+ GP PPG G G TGP
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP---- 1129
Query: 541 AAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREAN 600
A P P GP I + A AG P+ P+ + +Q A G +A
Sbjct: 1130 AGPPGNPGPPGPPGPPGPGID--MSAFAGL-GPREKGPDPLQYMRADQA-AGGLRQHDAE 1185
Query: 601 LQALIATGGDINAAIERLLGSQPS 624
+ A + + +N IE + + S
Sbjct: 1186 VDATLKS---LNNQIESIRSPEGS 1206
Score = 47.4 bits (111), Expect = 4e-05
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET--T 547
G GP P G G P P GP GP GP GP+ G+ G GP GP ET
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA 1130
Query: 548 SPTSESGP 555
P GP
Sbjct: 1131 GPPGNPGP 1138
Score = 46.6 bits (109), Expect = 7e-05
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP+ P GP G +GP GP G G PG G GP GP + P P
Sbjct: 717 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 776
Query: 550 -----TSESGPNQQFIQQMVQALAGANAPQLP 576
E+G Q +GA PQ P
Sbjct: 777 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 808
Score = 46.2 bits (108), Expect = 9e-05
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 476 FTPGVGVGVLGTAIGPVGPVTPIGPIGPI-------------VPFTPIGPIGPIGPTGPA 522
F G LG GP+GP+ P GP GP P P G GP+GP GP
Sbjct: 118 FDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP-GVSGPMGPRGPP 176
Query: 523 APPGSTGSGGPTG 535
PPG G G G
Sbjct: 177 GPPGKPGDDGEAG 189
Score = 46.2 bits (108), Expect = 9e-05
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 479 GVGVGVLGTAIGPVGPVTPIGPIG----------PIVPFTP--IGPIGPIGPTGP----- 521
G +GV+ +GP+GP P GP G P P P GP+GP GP GP
Sbjct: 124 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 183
Query: 522 ----AAPPGSTGSGGPTGPTVSSAAPSETTSP 549
A PG G GP GP + P P
Sbjct: 184 DDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 215
Score = 45.1 bits (105), Expect = 2e-04
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG---GPTGPTVSSAAPS 544
A G VGP G GP P P G GP G G + PPG G GP GP P
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 891
Query: 545 ETTSPTSESGPNQQFI--QQMVQALAGANA----PQLPNP 578
+ +E P Q + Q+ + L G P LP P
Sbjct: 892 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP 931
Score = 42.7 bits (99), Expect = 0.001
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G G P GP GP+GP G PG+ G+ G GPT + P P
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT-GARGPEGAQGP 322
Query: 550 TSESG 554
E G
Sbjct: 323 RGEPG 327
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 482 VGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSA 541
VG G A GP G P GP G G GP+GP+GPA G G GP G +
Sbjct: 995 VGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 542 APSE 545
P E
Sbjct: 1054 EPGE 1057
Score = 42.0 bits (97), Expect = 0.002
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP GP G P G G G G PPGS G+ GP GP PS
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP----PGPSGKD 857
Query: 548 SP---TSESGPNQQFIQQMVQALAG 569
P +SGP + + +Q AG
Sbjct: 858 GPKGARGDSGPPGRAGEPGLQGPAG 882
Score = 42.0 bits (97), Expect = 0.002
Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 470 PGLI-PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
PGL PS PG G G A G GP P+GP G P G G G GP G+
Sbjct: 926 PGLPGPSGEPGKQ-GAPG-ASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 983
Query: 529 GSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPN 577
G G G T + AP P GP +Q + AGA P P+
Sbjct: 984 GVKGDRGETGAVGAPG-APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1031
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/68 (36%), Positives = 27/68 (39%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G G G P P G GP GPTG P G+ G+ GP G T A
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Query: 548 SPTSESGP 555
P S P
Sbjct: 838 PPGSNGNP 845
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP GP GP P G G GP G PG+ G GP G + P
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN-GNPGPPGPP 851
Query: 548 SPTSESGP 555
P+ + GP
Sbjct: 852 GPSGKDGP 859
Score = 38.5 bits (88), Expect = 0.019
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG-SGGPTGP----TVSSAAPS 544
GP+GP G G P G G G GPA PPG G +GGP P A P+
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 311
Query: 545 ETTSPTSESGP 555
P GP
Sbjct: 312 GARGPEGAQGP 322
Score = 38.5 bits (88), Expect = 0.019
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G +GPIGP G PG+ G G G AP E P
Sbjct: 408 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE-RGP 466
Query: 550 TSESGP 555
+ +GP
Sbjct: 467 SGLAGP 472
Score = 38.1 bits (87), Expect = 0.024
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPI------------------GPIGPIGPTGPAAPPGSTGSG 531
GP GP P G GP+ P GP GP G GPA G G+
Sbjct: 366 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Query: 532 GPTGPTVSSAAPSETTSPTSESGPNQ 557
G G P E +P + P Q
Sbjct: 426 GEPGGVGPIGPPGERGAPGNRGFPGQ 451
Score = 37.4 bits (85), Expect = 0.042
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA---APPGSTGSGGPTGP 536
G + +GP GP P GP G P G G G GP PG+ G+ GP GP
Sbjct: 41 GDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 97
Score = 37.4 bits (85), Expect = 0.042
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G P GP GP+ P G G G G A P G+ G G GP P
Sbjct: 274 ARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 333
Query: 548 SPTSESGPNQQFI---QQMVQALAGANAPQLPNP 578
+ P I + A A AP P P
Sbjct: 334 PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 367
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G G A P P P GP GP P+GP G G G A G G G GP A
Sbjct: 354 GAPGIAGAPGFP-GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP----AG 408
Query: 543 PSETTSPTSESG 554
P P E G
Sbjct: 409 PQGAPGPAGEEG 420
Score = 36.6 bits (83), Expect = 0.071
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G P GP GP G GP G G PPG G GG G P E +P
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG---DQGVPGEAGAP 623
Score = 36.2 bits (82), Expect = 0.093
Identities = 23/64 (35%), Positives = 24/64 (37%)
Query: 473 IPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
IP G + A G GP P GP G P P G G G G G G G
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Query: 533 PTGP 536
P GP
Sbjct: 406 PAGP 409
Score = 35.8 bits (81), Expect = 0.12
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGA 570
G G GP GPA P G G G GP+ P P P Q + A
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP------GEA 620
Query: 571 NAPQLPNP 578
AP L P
Sbjct: 621 GAPGLVGP 628
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP P G G P GP G G GP PPG G G G + AP
Sbjct: 571 AAGPPGPAGPAGERGE--QGAP-GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG-LV 626
Query: 548 SPTSESG 554
P E G
Sbjct: 627 GPRGERG 633
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG------GPTGPTVSSA 541
A G GP G +G P G G G TGP PPG G+ GP GP SA
Sbjct: 688 AAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP-AGSA 746
Query: 542 APSETTSPTSESGP 555
E+GP
Sbjct: 747 GARGAPGERGETGP 760
Score = 35.8 bits (81), Expect = 0.12
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE--TT 547
GP G G G P P GP G G G PPG GS G G AP E T
Sbjct: 705 GPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARG------APGERGET 758
Query: 548 SPTSESG 554
P +G
Sbjct: 759 GPPGPAG 765
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/57 (33%), Positives = 20/57 (35%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G P P GP G G G P G G GP GP P + P P
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 623
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/114 (28%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 466 ATEAPGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPT---- 519
A APG S P G G G GP+ P GP G P GP G G
Sbjct: 997 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056
Query: 520 -----------------GPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPN 556
GP P G G+ GP GP+ P P+ + G N
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKDGAN 1109
Score = 35.0 bits (79), Expect = 0.21
Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 16/81 (19%)
Query: 490 GPVGPVTPIGPIGPIVP---------------FTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
GP G P GP G P P G G +G GP PG G G T
Sbjct: 660 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 719
Query: 535 GPTVSSAAPSETTSPTSESGP 555
GP + P+ E GP
Sbjct: 720 GP-IGPPGPAGANGEKGEVGP 739
Score = 35.0 bits (79), Expect = 0.21
Identities = 21/62 (33%), Positives = 23/62 (37%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A+G G P G GP P G G G GP P G G+ G GP E
Sbjct: 994 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 548 SP 549
P
Sbjct: 1054 EP 1055
Score = 34.7 bits (78), Expect = 0.27
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 478 PGVGVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
P G G G A G GP GP G P G G GP G + PG+ G G G
Sbjct: 292 PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 351
Query: 536 ----PTVSSA----APSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPE 579
P ++ A P P +GP Q +AG Q P E
Sbjct: 352 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGE 403
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
A G G G +G P G GP GPTG G G+ GP GP+ + A
Sbjct: 982 AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Score = 34.3 bits (77), Expect = 0.35
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 501 IGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG-----PTVSSAAPSETTSPTSESGP 555
+GP P P GP G GP G G G+ GP G T + P P G
Sbjct: 47 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 106
Query: 556 NQQFIQQM 563
F QM
Sbjct: 107 GGNFAAQM 114
Score = 34.3 bits (77), Expect = 0.35
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 490 GPVG-PVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
GP G P TP G GP P GP G GP G PG G+ G GP
Sbjct: 648 GPRGLPGTP-GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGP 694
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/72 (31%), Positives = 24/72 (33%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP G G P G GP GP G PG G G G E P
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Query: 550 TSESGPNQQFIQ 561
P Q +Q
Sbjct: 636 GERGSPGAQGLQ 647
Score = 33.1 bits (74), Expect = 0.79
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
G GP G GP+ PG G GP GP + P
Sbjct: 498 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/62 (35%), Positives = 24/62 (38%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A G G V PIGP G G G G GP PG G G GP ++ P
Sbjct: 424 ARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPG 483
Query: 548 SP 549
P
Sbjct: 484 EP 485
Score = 31.6 bits (70), Expect = 2.3
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 470 PGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPI-VPFTPIGPIGPIGPTGPAAPPGST 528
PGL + GV G + P +P GP+GP +P G G GP G A G+
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSP-GPMGPRGLP----GERGRTGPAGAAGARGND 278
Query: 529 GSGGPTGP 536
G GP GP
Sbjct: 279 GQPGPAGP 286
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/66 (31%), Positives = 23/66 (34%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G G P G GP GP G A G G G G P + P
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP 935
Query: 550 TSESGP 555
+ P
Sbjct: 936 GKQGAP 941
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/60 (33%), Positives = 22/60 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G VGP+ P G G G G GP G G +G GP G P E P
Sbjct: 429 GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 488
Score = 30.0 bits (66), Expect = 6.7
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP G V P G G G GP GP G PG G GP G
Sbjct: 501 GPQGKVGPSGAPG------EDGRPGPPGPQGARGQPGVMGFPGPKG 540
Score = 29.6 bits (65), Expect = 8.7
Identities = 19/58 (32%), Positives = 23/58 (39%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
A G G GP G + P G G GP GP G G G GP ++ P +
Sbjct: 490 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 547
Score = 29.6 bits (65), Expect = 8.7
Identities = 29/89 (32%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 469 APGLIPSFTPGVGVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
APGL+ G G+ A G GP G G P GP GP G GP G
Sbjct: 622 APGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681
Query: 527 STGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G G A P E GP
Sbjct: 682 MPGERGAAG----IAGPKGDRGDVGEKGP 706
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 53.5 bits (127), Expect = 6e-07
Identities = 50/141 (35%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 459 QQGLQTLATEA--PGLIP-SFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGP 515
+QG Q + +A PGL + TPG+ GP GP+ P G G FT G G
Sbjct: 1640 EQGRQGMKGDAGEPGLPGRTGTPGLP--------GPPGPMGPPGDRG----FT--GKDGA 1685
Query: 516 IGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP-----TSESGPNQQFI-QQMVQALAG 569
+GP GP PPGS GS G TGP+ P + P E G Q M++A+A
Sbjct: 1686 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 1745
Query: 570 ANAPQLPNPEV-RFQQQLEQL 589
QL + ++ RF Q L Q+
Sbjct: 1746 QVCEQLISGQMNRFNQMLNQI 1766
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTP---IGPIGPIGPTGPAAPPGSTGSGGPTGP 536
++GP GP P G G P G IGP GP G PPG G GP GP
Sbjct: 1581 SVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGP 1632
Score = 36.6 bits (83), Expect = 0.071
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
GP G P GP G P G G GP GP PG++G GP GP
Sbjct: 1831 GPRGLPGPPGPQGESRTGPP-GSTGSRGPPGPPGRPGNSGIRGPPGP 1876
Score = 36.2 bits (82), Expect = 0.093
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 498 IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQ 557
+GP GP GP G G GP G +G+ GP GP P P GPN
Sbjct: 1582 VGPPGPP------GPAGGPGAKGPRGERGISGAIGPPGPR-GDIGPPGPQGPPGPQGPNG 1634
Query: 558 QFI--QQMVQALAG-ANAPQLP 576
I +Q Q + G A P LP
Sbjct: 1635 LSIPGEQGRQGMKGDAGEPGLP 1656
Score = 34.3 bits (77), Expect = 0.35
Identities = 29/84 (34%), Positives = 29/84 (34%), Gaps = 37/84 (44%)
Query: 490 GPVGPVTPIGPIG----------PIVPFTP----------------------IGPIGPIG 517
GP GP P G G P P TP GP G G
Sbjct: 1778 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPG 1837
Query: 518 PTGP-----AAPPGSTGSGGPTGP 536
P GP PPGSTGS GP GP
Sbjct: 1838 PPGPQGESRTGPPGSTGSRGPPGP 1861
Score = 33.5 bits (75), Expect = 0.60
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 502 GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET-TSPTSESGP 555
GP P P G G G GP PG G+ G GP P E T SGP
Sbjct: 1778 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGP 1832
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 53.5 bits (127), Expect = 6e-07
Identities = 50/141 (35%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 459 QQGLQTLATEA--PGLIP-SFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGP 515
+QG Q + +A PGL + TPG+ GP GP+ P G G FT G G
Sbjct: 2804 EQGRQGMKGDAGEPGLPGRTGTPGLP--------GPPGPMGPPGDRG----FT--GKDGA 2849
Query: 516 IGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP-----TSESGPNQQFI-QQMVQALAG 569
+GP GP PPGS GS G TGP+ P + P E G Q M++A+A
Sbjct: 2850 MGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVAR 2909
Query: 570 ANAPQLPNPEV-RFQQQLEQL 589
QL + ++ RF Q L Q+
Sbjct: 2910 QVCEQLISGQMNRFNQMLNQI 2930
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTP---IGPIGPIGPTGPAAPPGSTGSGGPTGP 536
++GP GP P G G P G IGP GP G PPG G GP GP
Sbjct: 2745 SVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGP 2796
Score = 36.6 bits (83), Expect = 0.071
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
GP G P GP G P G G GP GP PG++G GP GP
Sbjct: 2995 GPRGLPGPPGPQGESRTGPP-GSTGSRGPPGPPGRPGNSGIRGPPGP 3040
Score = 36.2 bits (82), Expect = 0.093
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 498 IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQ 557
+GP GP GP G G GP G +G+ GP GP P P GPN
Sbjct: 2746 VGPPGPP------GPAGGPGAKGPRGERGISGAIGPPGPR-GDIGPPGPQGPPGPQGPNG 2798
Query: 558 QFI--QQMVQALAG-ANAPQLP 576
I +Q Q + G A P LP
Sbjct: 2799 LSIPGEQGRQGMKGDAGEPGLP 2820
Score = 34.3 bits (77), Expect = 0.35
Identities = 29/84 (34%), Positives = 29/84 (34%), Gaps = 37/84 (44%)
Query: 490 GPVGPVTPIGPIG----------PIVPFTP----------------------IGPIGPIG 517
GP GP P G G P P TP GP G G
Sbjct: 2942 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPG 3001
Query: 518 PTGP-----AAPPGSTGSGGPTGP 536
P GP PPGSTGS GP GP
Sbjct: 3002 PPGPQGESRTGPPGSTGSRGPPGP 3025
Score = 33.5 bits (75), Expect = 0.60
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 502 GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET-TSPTSESGP 555
GP P P G G G GP PG G+ G GP P E T SGP
Sbjct: 2942 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGP 2996
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 53.1 bits (126), Expect = 7e-07
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET- 546
A G G P G G + P P+G GP GP GP P GS G GGP G T A T
Sbjct: 737 AKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTG 796
Query: 547 -TSPTSESGP 555
P+ SGP
Sbjct: 797 PPGPSGISGP 806
Score = 50.8 bits (120), Expect = 4e-06
Identities = 34/97 (35%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 466 ATEAPGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA 523
A APG + + P G G A GP GP P G G P GP G GP G A
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733
Query: 524 PPGSTGSGGPTGP-----TVSSAAPSETTSPTSESGP 555
PG+ G G GP V P P +GP
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP 770
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP +G G G GP GP G PPG +G+ GPTGP + S PS P
Sbjct: 559 GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGP-IGSRGPSGPPGP 617
Query: 550 TSESG 554
G
Sbjct: 618 DGNKG 622
Score = 50.1 bits (118), Expect = 6e-06
Identities = 25/55 (45%), Positives = 28/55 (50%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
+GP GPV GP GP P P G G GP G PG+ G GP GP+ S P
Sbjct: 753 VGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPP 807
Score = 49.7 bits (117), Expect = 8e-06
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
IGPVG GP GP+ P G G GP+GP P G+ G GP+GP
Sbjct: 954 IGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGP 1001
Score = 49.3 bits (116), Expect = 1e-05
Identities = 35/88 (39%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 469 APGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
APG + TPG G G G G V GP G +GP+GP GP G A PPG
Sbjct: 203 APG--ENGTPGQ-TGARGLP-GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 258
Query: 529 GSGGPTGP--TVSSAAPSETTSPTSESG 554
G+ GP G V +A P+ P E G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVG 286
Score = 47.8 bits (112), Expect = 3e-05
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP G + +G GP P P G +G G +GP PPG+ G+ G TG ++ P
Sbjct: 260 APGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAG 319
Query: 548 SP 549
+P
Sbjct: 320 AP 321
Score = 47.4 bits (111), Expect = 4e-05
Identities = 35/100 (35%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGP------IGPTGPAAPPGSTGSGGPTGPTVSSA 541
A GP G G +GP+ P PIG GP GP G G+ G GP GP
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG 286
Query: 542 AP--SETTSPTSESGPNQQFIQQMVQALAG-ANAPQLPNP 578
P S P G N + L G A AP LP P
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGP 326
Score = 47.4 bits (111), Expect = 4e-05
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP GP G P GPIG GP+GP P G+ G G G V +A PS +
Sbjct: 583 GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVG-AVGTAGPSGPSGL 641
Query: 550 TSESG 554
E G
Sbjct: 642 PGERG 646
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G +GPV G GP P P G G G TGP+ P G G+ GP GP+ + P
Sbjct: 952 GNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEP 1011
Query: 550 TSESGP 555
E GP
Sbjct: 1012 -GEKGP 1016
Score = 46.6 bits (109), Expect = 7e-05
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
++GP GP P GP GP G G +GP G P G G GP GP P
Sbjct: 1046 SVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPG--- 1102
Query: 548 SPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLN 590
S G + + +A +AP L + L+ LN
Sbjct: 1103 --VSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLN 1143
Score = 45.1 bits (105), Expect = 2e-04
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 482 VGVLGTAIGPVGPVTPIGP------IGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
VG G A GP GPV P G GP P P G +GP GP+GP G G G G
Sbjct: 957 VGAAG-APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKG 1015
Query: 536 P 536
P
Sbjct: 1016 P 1016
Score = 44.3 bits (103), Expect = 3e-04
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 470 PGLIPSFTP---GVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
PGL +F G GVG +GP GP+ +GP GP GP G GP G PG
Sbjct: 71 PGLGGNFAAQYDGKGVG-----LGP-GPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPG 124
Query: 527 STGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
TG G GP E P P ++ + A P LP
Sbjct: 125 QTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP 174
Score = 44.3 bits (103), Expect = 3e-04
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETT 547
A GP GP P GP G P G G G G PPG +G GP GP A
Sbjct: 761 AAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPP-GPAGKEGLR 819
Query: 548 SPTSESGP 555
P + GP
Sbjct: 820 GPRGDQGP 827
Score = 43.5 bits (101), Expect = 6e-04
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP P G G P GP+G G G PPG G GP+G +A P T P
Sbjct: 805 GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSG-EAGTAGPPGTPGP 863
Score = 42.4 bits (98), Expect = 0.001
Identities = 33/98 (33%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 466 ATEAPGLIPSFTPGVGVGVLGT-----AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTG 520
AT A GL+ P G G + GP GP P G G P G GP GP G
Sbjct: 338 ATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Query: 521 PAAPPGSTGSGGPTGPTVSSAAPSE--TTSPTSESGPN 556
PGS G G G P + P GPN
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPN 435
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 489 IGPVGPVTPIG---------PIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVS 539
IGP G P+G PIGP G IG GP GP PG G G G +
Sbjct: 459 IGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGA 518
Query: 540 SAAPSETTSPTSESGPNQQFIQ 561
AP + ++ P Q +Q
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQ 540
Score = 41.2 bits (95), Expect = 0.003
Identities = 29/85 (34%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G GP P G GP GP GP PPG G GG P
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGP 92
Query: 550 TSESGPNQQFIQQMVQALAGANAPQ 574
GP AGA PQ
Sbjct: 93 MGLMGPRGP------PGAAGAPGPQ 111
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 468 EAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
+ P +P G+ L G G G +GP P P GP GP G G PG+
Sbjct: 1014 KGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGT 1073
Query: 528 TGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G GP P+ P GP
Sbjct: 1074 VGPAGIRGPQ-GHQGPAGPPGPPGPPGP 1100
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 488 AIGPVGPVTPIGPIGPIVPF------TPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
A GP GP+ GP GP P +G +G GP+GP+ PG G+ G G
Sbjct: 599 AAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPG 652
Score = 40.4 bits (93), Expect = 0.005
Identities = 34/93 (36%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 470 PGLIPSFTPGVGVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
PG S G G+ G A G GP P G GP P P G G GP G P G
Sbjct: 771 PGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGR 830
Query: 528 TGSGGPTGPT--VSSAAPS---ETTSPTSESGP 555
TG G GP PS T P GP
Sbjct: 831 TGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGP 863
Score = 39.3 bits (90), Expect = 0.011
Identities = 33/92 (35%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 469 APGLI-PSFTPG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA--- 523
APGL P PG VG A G VG P G G G GP GP GP+
Sbjct: 320 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEG 379
Query: 524 ---PPGSTGSGGPTGPTVSSAAPSETTSPTSE 552
P G GS GP GP +P P ++
Sbjct: 380 KRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD 411
Score = 39.3 bits (90), Expect = 0.011
Identities = 29/108 (26%), Positives = 33/108 (30%), Gaps = 43/108 (39%)
Query: 490 GPVGPVTPIGPIGPIVPFTP---------------------------------------- 509
GP GPV P G +GP P P
Sbjct: 982 GPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQ 1041
Query: 510 --IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G +GP GP GPA P G G G TG + P+ P GP
Sbjct: 1042 GAPGSVGPAGPRGPAGPSGPAGKDGRTGHP-GTVGPAGIRGPQGHQGP 1088
Score = 38.1 bits (87), Expect = 0.024
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G +G GP G G GP GPA P GS G G GP A P+ P
Sbjct: 673 GARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGP----AGPNGFAGP 728
Query: 550 TSESG 554
+G
Sbjct: 729 AGAAG 733
Score = 37.7 bits (86), Expect = 0.032
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 498 IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE-----TTSPTSE 552
+GP G +P +P G IGP G GP PG G GP GP + P PT +
Sbjct: 447 MGPRG--LPGSP-GNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGD 503
Query: 553 SGPN 556
G N
Sbjct: 504 PGKN 507
Score = 36.2 bits (82), Expect = 0.093
Identities = 22/56 (39%), Positives = 23/56 (41%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
G G P G G P P G G G GP PPG G GP+GP P E
Sbjct: 517 GARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGE 572
Score = 36.2 bits (82), Expect = 0.093
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
G GPV G +G + P G GP G G A PPG+ G G G
Sbjct: 823 GDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Score = 35.4 bits (80), Expect = 0.16
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP G P+G G + P G G GP+G A G G+ GP G
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQG 865
Score = 35.0 bits (79), Expect = 0.21
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 477 TPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
T G L G G P G GP+ G G +G GPA G +G+ G G
Sbjct: 306 TGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPG- 364
Query: 537 TVSSAAPSETTSPTSESG 554
SA P P+ E G
Sbjct: 365 ---SAGPQGPPGPSGEEG 379
Score = 35.0 bits (79), Expect = 0.21
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA-----PS 544
GP GP G GP P +G G G G PG G G GP S A P
Sbjct: 547 GPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPI 606
Query: 545 ETTSPTSESGPNQQFIQQMVQALAGANAPQLPN 577
+ P+ GP+ + V G P P+
Sbjct: 607 GSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPS 639
Score = 35.0 bits (79), Expect = 0.21
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 469 APGLI--PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
APG++ P G+ + A+G GP+ GP G P +G G G G A G
Sbjct: 869 APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDG 928
Query: 527 STGSGGPTG 535
+ G+ GP G
Sbjct: 929 NPGNDGPPG 937
Score = 34.3 bits (77), Expect = 0.35
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 483 GVLGTAIGPVGPVTPIGPIG-PIVPFTP-----------IGPIGPIGPTGPAAPPGSTGS 530
G GTA GP G P G +G P + P G +G GP G A PPG+ G
Sbjct: 850 GEAGTA-GPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGP 908
Query: 531 GGPTGPTVSSAAPSE 545
G G + AP E
Sbjct: 909 PGAVGSPGVNGAPGE 923
Score = 33.9 bits (76), Expect = 0.46
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 493 GPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTS 551
GP GP+G +GP G G GP+ G+ G G GP AP P S
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGS 878
Score = 32.3 bits (72), Expect = 1.3
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGS------------GGPTGPT 537
G GP P G G P GP G G GP+ P G G GP GP
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPR 588
Query: 538 VSSAAPSET-----TSPTSESGPN 556
P E+ T P GP+
Sbjct: 589 GERGPPGESGAAGPTGPIGSRGPS 612
Score = 32.3 bits (72), Expect = 1.3
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPI-VPFTP--------IGPIGPIGPTGPAAPPGST 528
PGV VG +GTA GP GP G G +P G IG G G PG+
Sbjct: 624 PGV-VGAVGTA-GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV 681
Query: 529 GSGGPTGPT-----VSSAAPSETTSPTSESG 554
G+ GP G T +A P+ P G
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGSPG 712
Score = 32.0 bits (71), Expect = 1.8
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+GP G GP G P G G G GP PGS G+ GP G
Sbjct: 417 MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAG 463
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGS------GGPTGPT 537
+GP G G IGP P+G G G GP P G+ G GP GPT
Sbjct: 447 MGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPT 501
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G+ G A G VG P+G GP P G +G G G G G+ G GP
Sbjct: 883 GLPGVA-GAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQ 941
Query: 543 P 543
P
Sbjct: 942 P 942
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 490 GPVGPVTPIGPIGP---IVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GPVG +G +GP P G G GP G P G G+ G G
Sbjct: 826 GPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILG 874
Score = 31.2 bits (69), Expect = 3.0
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG----PTVSSA--- 541
+G VGP G GP GP G GP G PG G G G P V+ A
Sbjct: 834 VGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGE 893
Query: 542 -APSETTSPTSESGP 555
P P GP
Sbjct: 894 PGPLGIAGPPGARGP 908
Score = 30.8 bits (68), Expect = 3.9
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G +GP GP G GP G A PG G GP G S P + GP
Sbjct: 415 GVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPG----NIGPAGKEGP 467
Score = 30.8 bits (68), Expect = 3.9
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 474 PSFTPGV-----GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
P TPG G+LG G G G G + P+G GP G GP GS
Sbjct: 857 PPGTPGPQGLLGAPGILGLP-GSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Query: 529 GSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G G G P P + P +
Sbjct: 916 GVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 945
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 53.1 bits (126), Expect = 7e-07
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 478 PG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
PG +G+ L G G +GP+GP P P GP GP G GP PPG G+ GP G
Sbjct: 1066 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG- 1124
Query: 537 TVSSAAPSETTSPTSESGP 555
P E+ SP + P
Sbjct: 1125 --EKGEPGESGSPGIQGEP 1141
Score = 49.7 bits (117), Expect = 8e-06
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 490 GPVGPVT------PIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP GP+ P G G P+GP GP GP GPA P G+ G GP G + P
Sbjct: 1064 GPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPP 1123
Query: 544 SETTSPTSESGPNQQ 558
E P P Q
Sbjct: 1124 GEKGEPGESGSPGIQ 1138
Score = 44.7 bits (104), Expect = 3e-04
Identities = 34/96 (35%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 470 PGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
PGLI P G G GP G G +G PIGP GP G GPA P G+
Sbjct: 1327 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1386
Query: 528 TGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQM 563
G+ GP GP P GP + IQ +
Sbjct: 1387 KGATGPGGP----KGEKGVQGPPGHPGPPGEVIQPL 1418
Score = 43.5 bits (101), Expect = 6e-04
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIG------------PIVPFTPIGPIGPIGPTG 520
P+ +PG G G IGP G P GP G PI P G GP+G G
Sbjct: 927 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 986
Query: 521 PAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
PA PPG G G G V T E GP
Sbjct: 987 PAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGP 1020
Score = 43.5 bits (101), Expect = 6e-04
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 474 PSFTPGV-----GVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
P+ +PG G G G AIG G P+GP GP P G G G G PG
Sbjct: 1236 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1295
Query: 527 STGSGGPTGPTVSSAAP 543
+TG GP GP P
Sbjct: 1296 ATGQAGPPGPVGPPGLP 1312
Score = 42.7 bits (99), Expect = 0.001
Identities = 26/69 (37%), Positives = 28/69 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IGP G P G +GP GP G PPG G GP GP S E P
Sbjct: 503 GERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 562
Query: 550 TSESGPNQQ 558
+ P Q
Sbjct: 563 GQQGTPGTQ 571
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG------GPT 534
G G+ G GP GP P G G GPIGP G GP PPG+ G GP
Sbjct: 912 GPGLKGNE-GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 970
Query: 535 GPT 537
GPT
Sbjct: 971 GPT 973
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G+ GTA GP G GP GP P G G G GP PPG G GP G
Sbjct: 905 GLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 963
Query: 543 PSE--TTSPTSESG 554
P E PT G
Sbjct: 964 PGEKGPIGPTGRDG 977
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
+GP GP GP G P GP G +GP G PPG G+ G G P
Sbjct: 526 LGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG----LPGPQGAIG 581
Query: 549 PTSESGP 555
P E GP
Sbjct: 582 PHGEKGP 588
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG----SGGPTGPTVSSAAPSE 545
GP GP P G IGP P P GP+G G PPG G G P P S P
Sbjct: 313 GPPGPEGPAGLIGP--PGIQGNP-GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR 369
Query: 546 TTSPTSESGP--------NQQFIQQMVQALAGANAP 573
S + GP Q +QQ AL G P
Sbjct: 370 FGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP 405
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G +GP GP+G G GP PPG G G G + P +P
Sbjct: 830 GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 889
Query: 550 TSESGP 555
+ GP
Sbjct: 890 -GKDGP 894
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS- 548
G GP P GP G P GP+G G GP G G G G P + S
Sbjct: 1160 GEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1219
Query: 549 -PTSESGP 555
PT E+GP
Sbjct: 1220 GPTGENGP 1227
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQ----A 566
GP GP GP G PPG G+ GP G P P S+ P M+ +
Sbjct: 313 GPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGS 372
Query: 567 LAGANAPQLPNPEVRFQQQLEQ 588
G P + E + Q L+Q
Sbjct: 373 GGGDKGPVVAAQEAQAQAILQQ 394
Score = 39.3 bits (90), Expect = 0.011
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P PGV VG G A G GP+ G GP P G G G G PG G+ G
Sbjct: 834 PPGPPGV-VGPQGAA-GETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 891
Query: 534 TGPTVSSAAPSETTSPTSESGP 555
GP P E P + GP
Sbjct: 892 DGPAGLRGFPGERGLPGTAGGP 913
Score = 39.3 bits (90), Expect = 0.011
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 474 PSFTPG----VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P +PG +G+ IGP GP GP GP GP GP G G PPG G
Sbjct: 1350 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1409
Query: 530 SGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
G V P + T S + +Q+ +A+ AP P
Sbjct: 1410 PPG----EVIQPLPIQMPKKTRRSVDGSRLMQE-DEAIPTGGAPGSP 1451
Score = 38.9 bits (89), Expect = 0.014
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP GP GP +GP G G G + PG G G GP E+ P
Sbjct: 1100 GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP 1159
Query: 550 TSESGP 555
E GP
Sbjct: 1160 -GEPGP 1164
Score = 38.9 bits (89), Expect = 0.014
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P GP+G P G G G G PG+ G+ G TGP V A P+ P
Sbjct: 1220 GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGP-VGPAGPAGKPGP 1278
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
G QQ G P P
Sbjct: 1279 DGLRGLPGSVGQQGRPGATGQAGPPGP 1305
Score = 38.1 bits (87), Expect = 0.024
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 490 GPVGPVTPIGPIGPI-VPFTP--------IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GP GP+ G GP+ P +P +GP GP GP G PPG G G G +
Sbjct: 401 GPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 460
Query: 541 AAPSE 545
P +
Sbjct: 461 GMPGD 465
Score = 37.7 bits (86), Expect = 0.032
Identities = 22/60 (36%), Positives = 23/60 (38%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IG G P P GP G GP G PGS G G G T + P P
Sbjct: 1250 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309
Score = 37.0 bits (84), Expect = 0.054
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G GP G G G GP PPG G GP GP P P
Sbjct: 752 GERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-GFPGPKGPPGP 810
Query: 550 TSESG 554
+ G
Sbjct: 811 PGKDG 815
Score = 36.6 bits (83), Expect = 0.071
Identities = 30/90 (33%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G I P G GP G GP PPG G G G P + P
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGSLGP 555
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLPNPE 579
E GP Q Q L G P+ E
Sbjct: 556 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGE 585
Score = 36.6 bits (83), Expect = 0.071
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
IGP G GP G + P P G GP G G P G GS GP G P + +
Sbjct: 511 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQG---EPGPPGQQGT 567
Query: 549 PTSESGPNQQ 558
P ++ P Q
Sbjct: 568 PGTQGLPGPQ 577
Score = 36.2 bits (82), Expect = 0.093
Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 474 PSFTPGVG--VGVLGTAIGPVGPVTPIGPIGPIVP----FTP-----------IGPIGPI 516
P PG+ GV G GP GP +GP G P TP IGP G
Sbjct: 528 PKGPPGIPGPPGVRGMD-GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEK 586
Query: 517 GPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G PG GS GP G P T SGP
Sbjct: 587 GPQGKPGLPGMPGSDGPPGHP-GKEGPPGTKGNQGPSGP 624
Score = 36.2 bits (82), Expect = 0.093
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G P P G GP G TG + G++G GP GP P P GP
Sbjct: 749 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGP 804
Score = 35.8 bits (81), Expect = 0.12
Identities = 32/107 (29%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------PPGSTGSGGPTGPT 537
GP GP PIGP+G G G GP G PPG G G GP+
Sbjct: 1019 GPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1078
Query: 538 --------VSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
V P P +GPN GA+ PQ P
Sbjct: 1079 GEKGETGDVGPMGPPGPPGPRGPAGPN------------GADGPQGP 1113
Score = 35.8 bits (81), Expect = 0.12
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 490 GPVGPVTPIGPIGP---------IVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GPVGP P G GP + G G GP GP PPG G G G
Sbjct: 1265 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1319
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+G G G G P P GPIGP+G G A G G+ GP G
Sbjct: 1003 VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G +G G P P G +GP G G P G G GP GP P
Sbjct: 818 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877
Query: 550 TSESGP 555
++ P
Sbjct: 878 GTKGDP 883
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G GP P GP+G GP G G G G G + AP + T P +GP
Sbjct: 1217 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK-TGPVGPAGP 1272
Score = 34.3 bits (77), Expect = 0.35
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 477 TPGV-GVGVLGTAIGPVGPVTPIGPIG-PIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
TPG G+ AIGP G P G G P +P + GP G G GP G+ G GP
Sbjct: 567 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD-GPPGHPGKEGPPGTKGNQGPSGPQ 625
Query: 535 GP 536
GP
Sbjct: 626 GP 627
Score = 33.9 bits (76), Expect = 0.46
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS---------TGSGGPTGP--TV 538
GP GP G GP P GP GP GP G PG G GP GP V
Sbjct: 782 GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV 841
Query: 539 SSAAPSETTSPTSESG 554
+ T P E G
Sbjct: 842 GPQGAAGETGPMGERG 857
Score = 33.9 bits (76), Expect = 0.46
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 22/105 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------------PPGSTGSG 531
GP+GP G GP+ P GP G G G PPG G
Sbjct: 968 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1027
Query: 532 GPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
GP G ++ A E GP F + + G N P P
Sbjct: 1028 GPVGQPGAAGADGE----PGARGPQGHFGAKGDEGTRGFNGPPGP 1068
Score = 33.9 bits (76), Expect = 0.46
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P+ PGV G G G VG G G P GP GPIGP G G+ G G
Sbjct: 987 PAGPPGVA-GEDGDK-GEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1044
Query: 534 TGP 536
GP
Sbjct: 1045 RGP 1047
Score = 33.5 bits (75), Expect = 0.60
Identities = 26/81 (32%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP------------------PGSTGSG 531
GP GP P G GP P+G G GP G P PGS G
Sbjct: 1163 GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1222
Query: 532 GPTGPTVSSAAPSETTSPTSE 552
G GP SP SE
Sbjct: 1223 GENGPPGPLGKRGPAGSPGSE 1243
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE---- 545
G GP P G +G + P G G G G PG G G G S P E
Sbjct: 1106 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1165
Query: 546 -TTSPTSESGP 555
PT + GP
Sbjct: 1166 GPKGPTGDDGP 1176
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/54 (37%), Positives = 20/54 (37%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP G G G P GP G G GP P G G GP GP P
Sbjct: 764 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 817
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G P GP GP G GP PG G G GP P
Sbjct: 1145 GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPP-GEGGPRGQDGA 1203
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
+ G + + Q G N P P
Sbjct: 1204 KGDRGEDGEPGQPGSPGPTGENGPPGP 1230
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/47 (40%), Positives = 20/47 (42%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
IG G +G G P GP G GPTG PPG G G G
Sbjct: 664 IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 710
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 474 PSFTPGVGV----GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P F +GV G +G G G P GP G P GP G +G G PG G
Sbjct: 658 PGFKGDIGVKGDRGEVGVP-GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPG 716
Query: 530 SGGPTGPTVSSAAP 543
G GP S P
Sbjct: 717 YPGRQGPKGSLGFP 730
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGP--------------------- 521
G GT+ G GP P G G P P G GP GP GP
Sbjct: 773 GAKGTSGGD-GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 831
Query: 522 AAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
PPG G GP G + E P P +Q
Sbjct: 832 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQ 868
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 483 GVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
G+ GTA G G P G G P G G G G A PG G+ GP+GP +
Sbjct: 869 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 928
Query: 541 AAPSE 545
+P E
Sbjct: 929 GSPGE 933
Score = 31.2 bits (69), Expect = 3.0
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 490 GPVGPVTPIGPIGPI----------VPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
GP G P G GP VP P G GP G G PG++G G G +
Sbjct: 686 GPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLS 745
Query: 538 VSSAAPSE--TTSPTSESGPNQQFIQQMVQALAGANAPQLPNPE 579
S E T P + GP + + +G + P P E
Sbjct: 746 GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 789
Score = 30.4 bits (67), Expect = 5.1
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 490 GPVGPVTPIGPIGPI-------VPFTPIGPIGPIGPTGPAAPP---------GSTGSGGP 533
GP G GP G +P T GP G G GP+ PP G+ GSGGP
Sbjct: 884 GPPGAPGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGP 942
Query: 534 TGP 536
GP
Sbjct: 943 IGP 945
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/60 (33%), Positives = 21/60 (35%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G GP GP G PG G G GP P + P
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 817
Score = 30.0 bits (66), Expect = 6.7
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
P+ PG G+ L ++G G G GP P P G G G G G G G
Sbjct: 1272 PAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1331
Query: 533 PTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQA---LAGANAPQLPNP 578
GP + P + P Q+ + A + P LP P
Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1380
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGA 570
G G GP G P G G GP G T S A + P ++ G
Sbjct: 743 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----------GL 792
Query: 571 NAPQLPN 577
PQ PN
Sbjct: 793 PGPQGPN 799
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 53.1 bits (126), Expect = 7e-07
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 478 PG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
PG +G+ L G G +GP+GP P P GP GP G GP PPG G+ GP G
Sbjct: 1045 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG- 1103
Query: 537 TVSSAAPSETTSPTSESGP 555
P E+ SP + P
Sbjct: 1104 --EKGEPGESGSPGIQGEP 1120
Score = 49.7 bits (117), Expect = 8e-06
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 490 GPVGPVT------PIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP GP+ P G G P+GP GP GP GPA P G+ G GP G + P
Sbjct: 1043 GPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPP 1102
Query: 544 SETTSPTSESGPNQQ 558
E P P Q
Sbjct: 1103 GEKGEPGESGSPGIQ 1117
Score = 44.7 bits (104), Expect = 3e-04
Identities = 34/96 (35%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 470 PGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
PGLI P G G GP G G +G PIGP GP G GPA P G+
Sbjct: 1306 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1365
Query: 528 TGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQM 563
G+ GP GP P GP + IQ +
Sbjct: 1366 KGATGPGGP----KGEKGVQGPPGHPGPPGEVIQPL 1397
Score = 43.5 bits (101), Expect = 6e-04
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIG------------PIVPFTPIGPIGPIGPTG 520
P+ +PG G G IGP G P GP G PI P G GP+G G
Sbjct: 906 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 965
Query: 521 PAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
PA PPG G G G V T E GP
Sbjct: 966 PAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGP 999
Score = 43.5 bits (101), Expect = 6e-04
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 474 PSFTPGV-----GVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
P+ +PG G G G AIG G P+GP GP P G G G G PG
Sbjct: 1215 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1274
Query: 527 STGSGGPTGPTVSSAAP 543
+TG GP GP P
Sbjct: 1275 ATGQAGPPGPVGPPGLP 1291
Score = 42.7 bits (99), Expect = 0.001
Identities = 26/69 (37%), Positives = 28/69 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IGP G P G +GP GP G PPG G GP GP S E P
Sbjct: 482 GERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 541
Query: 550 TSESGPNQQ 558
+ P Q
Sbjct: 542 GQQGTPGTQ 550
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG------GPT 534
G G+ G GP GP P G G GPIGP G GP PPG+ G GP
Sbjct: 891 GPGLKGNE-GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 949
Query: 535 GPT 537
GPT
Sbjct: 950 GPT 952
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G+ GTA GP G GP GP P G G G GP PPG G GP G
Sbjct: 884 GLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 942
Query: 543 PSE--TTSPTSESG 554
P E PT G
Sbjct: 943 PGEKGPIGPTGRDG 956
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
+GP GP GP G P GP G +GP G PPG G+ G G P
Sbjct: 505 LGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG----LPGPQGAIG 560
Query: 549 PTSESGP 555
P E GP
Sbjct: 561 PHGEKGP 567
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG----SGGPTGPTVSSAAPSE 545
GP GP P G IGP P P GP+G G PPG G G P P S P
Sbjct: 292 GPPGPEGPAGLIGP--PGIQGNP-GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR 348
Query: 546 TTSPTSESGP--------NQQFIQQMVQALAGANAP 573
S + GP Q +QQ AL G P
Sbjct: 349 FGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP 384
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G +GP GP+G G GP PPG G G G + P +P
Sbjct: 809 GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 868
Query: 550 TSESGP 555
+ GP
Sbjct: 869 -GKDGP 873
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS- 548
G GP P GP G P GP+G G GP G G G G P + S
Sbjct: 1139 GEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1198
Query: 549 -PTSESGP 555
PT E+GP
Sbjct: 1199 GPTGENGP 1206
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQ----A 566
GP GP GP G PPG G+ GP G P P S+ P M+ +
Sbjct: 292 GPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGS 351
Query: 567 LAGANAPQLPNPEVRFQQQLEQ 588
G P + E + Q L+Q
Sbjct: 352 GGGDKGPVVAAQEAQAQAILQQ 373
Score = 39.3 bits (90), Expect = 0.011
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P PGV VG G A G GP+ G GP P G G G G PG G+ G
Sbjct: 813 PPGPPGV-VGPQGAA-GETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 870
Query: 534 TGPTVSSAAPSETTSPTSESGP 555
GP P E P + GP
Sbjct: 871 DGPAGLRGFPGERGLPGTAGGP 892
Score = 39.3 bits (90), Expect = 0.011
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 474 PSFTPG----VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P +PG +G+ IGP GP GP GP GP GP G G PPG G
Sbjct: 1329 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1388
Query: 530 SGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
G V P + T S + +Q+ +A+ AP P
Sbjct: 1389 PPG----EVIQPLPIQMPKKTRRSVDGSRLMQE-DEAIPTGGAPGSP 1430
Score = 38.9 bits (89), Expect = 0.014
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP GP GP +GP G G G + PG G G GP E+ P
Sbjct: 1079 GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP 1138
Query: 550 TSESGP 555
E GP
Sbjct: 1139 -GEPGP 1143
Score = 38.9 bits (89), Expect = 0.014
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P GP+G P G G G G PG+ G+ G TGP V A P+ P
Sbjct: 1199 GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGP-VGPAGPAGKPGP 1257
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
G QQ G P P
Sbjct: 1258 DGLRGLPGSVGQQGRPGATGQAGPPGP 1284
Score = 38.1 bits (87), Expect = 0.024
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 490 GPVGPVTPIGPIGPI-VPFTP--------IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GP GP+ G GP+ P +P +GP GP GP G PPG G G G +
Sbjct: 380 GPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 439
Query: 541 AAPSE 545
P +
Sbjct: 440 GMPGD 444
Score = 37.7 bits (86), Expect = 0.032
Identities = 22/60 (36%), Positives = 23/60 (38%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IG G P P GP G GP G PGS G G G T + P P
Sbjct: 1229 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288
Score = 37.0 bits (84), Expect = 0.054
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G GP G G G GP PPG G GP GP P P
Sbjct: 731 GERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-GFPGPKGPPGP 789
Query: 550 TSESG 554
+ G
Sbjct: 790 PGKDG 794
Score = 36.6 bits (83), Expect = 0.071
Identities = 30/90 (33%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G I P G GP G GP PPG G G G P + P
Sbjct: 476 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGSLGP 534
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLPNPE 579
E GP Q Q L G P+ E
Sbjct: 535 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGE 564
Score = 36.6 bits (83), Expect = 0.071
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
IGP G GP G + P P G GP G G P G GS GP G P + +
Sbjct: 490 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQG---EPGPPGQQGT 546
Query: 549 PTSESGPNQQ 558
P ++ P Q
Sbjct: 547 PGTQGLPGPQ 556
Score = 36.2 bits (82), Expect = 0.093
Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 474 PSFTPGVG--VGVLGTAIGPVGPVTPIGPIGPIVP----FTP-----------IGPIGPI 516
P PG+ GV G GP GP +GP G P TP IGP G
Sbjct: 507 PKGPPGIPGPPGVRGMD-GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEK 565
Query: 517 GPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G PG GS GP G P T SGP
Sbjct: 566 GPQGKPGLPGMPGSDGPPGHP-GKEGPPGTKGNQGPSGP 603
Score = 36.2 bits (82), Expect = 0.093
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G P P G GP G TG + G++G GP GP P P GP
Sbjct: 728 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGP 783
Score = 35.8 bits (81), Expect = 0.12
Identities = 32/107 (29%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------PPGSTGSGGPTGPT 537
GP GP PIGP+G G G GP G PPG G G GP+
Sbjct: 998 GPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1057
Query: 538 --------VSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
V P P +GPN GA+ PQ P
Sbjct: 1058 GEKGETGDVGPMGPPGPPGPRGPAGPN------------GADGPQGP 1092
Score = 35.8 bits (81), Expect = 0.12
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 490 GPVGPVTPIGPIGP---------IVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GPVGP P G GP + G G GP GP PPG G G G
Sbjct: 1244 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1298
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+G G G G P P GPIGP+G G A G G+ GP G
Sbjct: 982 VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G +G G P P G +GP G G P G G GP GP P
Sbjct: 797 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856
Query: 550 TSESGP 555
++ P
Sbjct: 857 GTKGDP 862
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G GP P GP+G GP G G G G G + AP + T P +GP
Sbjct: 1196 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK-TGPVGPAGP 1251
Score = 34.3 bits (77), Expect = 0.35
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 477 TPGV-GVGVLGTAIGPVGPVTPIGPIG-PIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
TPG G+ AIGP G P G G P +P + GP G G GP G+ G GP
Sbjct: 546 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD-GPPGHPGKEGPPGTKGNQGPSGPQ 604
Query: 535 GP 536
GP
Sbjct: 605 GP 606
Score = 33.9 bits (76), Expect = 0.46
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS---------TGSGGPTGP--TV 538
GP GP G GP P GP GP GP G PG G GP GP V
Sbjct: 761 GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV 820
Query: 539 SSAAPSETTSPTSESG 554
+ T P E G
Sbjct: 821 GPQGAAGETGPMGERG 836
Score = 33.9 bits (76), Expect = 0.46
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 22/105 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------------PPGSTGSG 531
GP+GP G GP+ P GP G G G PPG G
Sbjct: 947 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1006
Query: 532 GPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
GP G ++ A E GP F + + G N P P
Sbjct: 1007 GPVGQPGAAGADGE----PGARGPQGHFGAKGDEGTRGFNGPPGP 1047
Score = 33.9 bits (76), Expect = 0.46
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P+ PGV G G G VG G G P GP GPIGP G G+ G G
Sbjct: 966 PAGPPGVA-GEDGDK-GEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1023
Query: 534 TGP 536
GP
Sbjct: 1024 RGP 1026
Score = 33.5 bits (75), Expect = 0.60
Identities = 26/81 (32%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP------------------PGSTGSG 531
GP GP P G GP P+G G GP G P PGS G
Sbjct: 1142 GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1201
Query: 532 GPTGPTVSSAAPSETTSPTSE 552
G GP SP SE
Sbjct: 1202 GENGPPGPLGKRGPAGSPGSE 1222
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE---- 545
G GP P G +G + P G G G G PG G G G S P E
Sbjct: 1085 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1144
Query: 546 -TTSPTSESGP 555
PT + GP
Sbjct: 1145 GPKGPTGDDGP 1155
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/54 (37%), Positives = 20/54 (37%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP G G G P GP G G GP P G G GP GP P
Sbjct: 743 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 796
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G P GP GP G GP PG G G GP P
Sbjct: 1124 GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPP-GEGGPRGQDGA 1182
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
+ G + + Q G N P P
Sbjct: 1183 KGDRGEDGEPGQPGSPGPTGENGPPGP 1209
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/47 (40%), Positives = 20/47 (42%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
IG G +G G P GP G GPTG PPG G G G
Sbjct: 643 IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 689
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 474 PSFTPGVGV----GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P F +GV G +G G G P GP G P GP G +G G PG G
Sbjct: 637 PGFKGDIGVKGDRGEVGVP-GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPG 695
Query: 530 SGGPTGPTVSSAAP 543
G GP S P
Sbjct: 696 YPGRQGPKGSLGFP 709
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGP--------------------- 521
G GT+ G GP P G G P P G GP GP GP
Sbjct: 752 GAKGTSGGD-GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 810
Query: 522 AAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
PPG G GP G + E P P +Q
Sbjct: 811 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQ 847
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 483 GVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
G+ GTA G G P G G P G G G G A PG G+ GP+GP +
Sbjct: 848 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 907
Query: 541 AAPSE 545
+P E
Sbjct: 908 GSPGE 912
Score = 31.2 bits (69), Expect = 3.0
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 490 GPVGPVTPIGPIGPI----------VPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
GP G P G GP VP P G GP G G PG++G G G +
Sbjct: 665 GPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLS 724
Query: 538 VSSAAPSE--TTSPTSESGPNQQFIQQMVQALAGANAPQLPNPE 579
S E T P + GP + + +G + P P E
Sbjct: 725 GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 768
Score = 30.4 bits (67), Expect = 5.1
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 490 GPVGPVTPIGPIGPI-------VPFTPIGPIGPIGPTGPAAPP---------GSTGSGGP 533
GP G GP G +P T GP G G GP+ PP G+ GSGGP
Sbjct: 863 GPPGAPGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGP 921
Query: 534 TGP 536
GP
Sbjct: 922 IGP 924
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/60 (33%), Positives = 21/60 (35%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G GP GP G PG G G GP P + P
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 796
Score = 30.0 bits (66), Expect = 6.7
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
P+ PG G+ L ++G G G GP P P G G G G G G G
Sbjct: 1251 PAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1310
Query: 533 PTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQA---LAGANAPQLPNP 578
GP + P + P Q+ + A + P LP P
Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1359
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGA 570
G G GP G P G G GP G T S A + P ++ G
Sbjct: 722 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----------GL 771
Query: 571 NAPQLPN 577
PQ PN
Sbjct: 772 PGPQGPN 778
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 53.1 bits (126), Expect = 7e-07
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 478 PG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
PG +G+ L G G +GP+GP P P GP GP G GP PPG G+ GP G
Sbjct: 1152 PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG- 1210
Query: 537 TVSSAAPSETTSPTSESGP 555
P E+ SP + P
Sbjct: 1211 --EKGEPGESGSPGIQGEP 1227
Score = 49.7 bits (117), Expect = 8e-06
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 490 GPVGPVT------PIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP GP+ P G G P+GP GP GP GPA P G+ G GP G + P
Sbjct: 1150 GPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPP 1209
Query: 544 SETTSPTSESGPNQQ 558
E P P Q
Sbjct: 1210 GEKGEPGESGSPGIQ 1224
Score = 44.7 bits (104), Expect = 3e-04
Identities = 34/96 (35%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 470 PGLIPSFTPGVGVGVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
PGLI P G G GP G G +G PIGP GP G GPA P G+
Sbjct: 1413 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1472
Query: 528 TGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQM 563
G+ GP GP P GP + IQ +
Sbjct: 1473 KGATGPGGP----KGEKGVQGPPGHPGPPGEVIQPL 1504
Score = 43.5 bits (101), Expect = 6e-04
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIG------------PIVPFTPIGPIGPIGPTG 520
P+ +PG G G IGP G P GP G PI P G GP+G G
Sbjct: 1013 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 1072
Query: 521 PAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
PA PPG G G G V T E GP
Sbjct: 1073 PAGPPGVAGEDGDKG-EVGDPGQKGTKGNKGEHGP 1106
Score = 43.5 bits (101), Expect = 6e-04
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 474 PSFTPGV-----GVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPG 526
P+ +PG G G G AIG G P+GP GP P G G G G PG
Sbjct: 1322 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1381
Query: 527 STGSGGPTGPTVSSAAP 543
+TG GP GP P
Sbjct: 1382 ATGQAGPPGPVGPPGLP 1398
Score = 42.7 bits (99), Expect = 0.001
Identities = 26/69 (37%), Positives = 28/69 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IGP G P G +GP GP G PPG G GP GP S E P
Sbjct: 589 GERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 648
Query: 550 TSESGPNQQ 558
+ P Q
Sbjct: 649 GQQGTPGTQ 657
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSG------GPT 534
G G+ G GP GP P G G GPIGP G GP PPG+ G GP
Sbjct: 998 GPGLKGNE-GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 1056
Query: 535 GPT 537
GPT
Sbjct: 1057 GPT 1059
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G+ GTA GP G GP GP P G G G GP PPG G GP G
Sbjct: 991 GLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV 1049
Query: 543 PSE--TTSPTSESG 554
P E PT G
Sbjct: 1050 PGEKGPIGPTGRDG 1063
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
+GP GP GP G P GP G +GP G PPG G+ G G P
Sbjct: 612 LGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG----LPGPQGAIG 667
Query: 549 PTSESGP 555
P E GP
Sbjct: 668 PHGEKGP 674
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG----SGGPTGPTVSSAAPSE 545
GP GP P G IGP P P GP+G G PPG G G P P S P
Sbjct: 399 GPPGPEGPAGLIGP--PGIQGNP-GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR 455
Query: 546 TTSPTSESGP--------NQQFIQQMVQALAGANAP 573
S + GP Q +QQ AL G P
Sbjct: 456 FGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGP 491
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G +GP GP+G G GP PPG G G G + P +P
Sbjct: 916 GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAP 975
Query: 550 TSESGP 555
+ GP
Sbjct: 976 -GKDGP 980
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS- 548
G GP P GP G P GP+G G GP G G G G P + S
Sbjct: 1246 GEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSP 1305
Query: 549 -PTSESGP 555
PT E+GP
Sbjct: 1306 GPTGENGP 1313
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQ----A 566
GP GP GP G PPG G+ GP G P P S+ P M+ +
Sbjct: 399 GPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGS 458
Query: 567 LAGANAPQLPNPEVRFQQQLEQ 588
G P + E + Q L+Q
Sbjct: 459 GGGDKGPVVAAQEAQAQAILQQ 480
Score = 39.3 bits (90), Expect = 0.011
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P PGV VG G A G GP+ G GP P G G G G PG G+ G
Sbjct: 920 PPGPPGV-VGPQGAA-GETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 977
Query: 534 TGPTVSSAAPSETTSPTSESGP 555
GP P E P + GP
Sbjct: 978 DGPAGLRGFPGERGLPGTAGGP 999
Score = 39.3 bits (90), Expect = 0.011
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 474 PSFTPG----VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P +PG +G+ IGP GP GP GP GP GP G G PPG G
Sbjct: 1436 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPG 1495
Query: 530 SGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
G V P + T S + +Q+ +A+ AP P
Sbjct: 1496 PPG----EVIQPLPIQMPKKTRRSVDGSRLMQE-DEAIPTGGAPGSP 1537
Score = 38.9 bits (89), Expect = 0.014
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP GP GP GP +GP G G G + PG G G GP E+ P
Sbjct: 1186 GPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQP 1245
Query: 550 TSESGP 555
E GP
Sbjct: 1246 -GEPGP 1250
Score = 38.9 bits (89), Expect = 0.014
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P GP+G P G G G G PG+ G+ G TGP V A P+ P
Sbjct: 1306 GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGP-VGPAGPAGKPGP 1364
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
G QQ G P P
Sbjct: 1365 DGLRGLPGSVGQQGRPGATGQAGPPGP 1391
Score = 38.1 bits (87), Expect = 0.024
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 490 GPVGPVTPIGPIGPI-VPFTP--------IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GP GP+ G GP+ P +P +GP GP GP G PPG G G G +
Sbjct: 487 GPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 546
Query: 541 AAPSE 545
P +
Sbjct: 547 GMPGD 551
Score = 37.7 bits (86), Expect = 0.032
Identities = 22/60 (36%), Positives = 23/60 (38%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G IG G P P GP G GP G PGS G G G T + P P
Sbjct: 1336 GAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395
Score = 37.0 bits (84), Expect = 0.054
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP P G GP G G G GP PPG G GP GP P P
Sbjct: 838 GERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-GFPGPKGPPGP 896
Query: 550 TSESG 554
+ G
Sbjct: 897 PGKDG 901
Score = 36.6 bits (83), Expect = 0.071
Identities = 30/90 (33%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G I P G GP G GP PPG G G G P + P
Sbjct: 583 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD-GPQGPKGSLGP 641
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLPNPE 579
E GP Q Q L G P+ E
Sbjct: 642 QGEPGPPGQQGTPGTQGLPGPQGAIGPHGE 671
Score = 36.6 bits (83), Expect = 0.071
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
IGP G GP G + P P G GP G G P G GS GP G P + +
Sbjct: 597 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQG---EPGPPGQQGT 653
Query: 549 PTSESGPNQQ 558
P ++ P Q
Sbjct: 654 PGTQGLPGPQ 663
Score = 36.2 bits (82), Expect = 0.093
Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 474 PSFTPGVG--VGVLGTAIGPVGPVTPIGPIGPIVP----FTP-----------IGPIGPI 516
P PG+ GV G GP GP +GP G P TP IGP G
Sbjct: 614 PKGPPGIPGPPGVRGMD-GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEK 672
Query: 517 GPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G PG GS GP G P T SGP
Sbjct: 673 GPQGKPGLPGMPGSDGPPGHP-GKEGPPGTKGNQGPSGP 710
Score = 36.2 bits (82), Expect = 0.093
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP G P P G GP G TG + G++G GP GP P P GP
Sbjct: 835 GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGP 890
Score = 35.8 bits (81), Expect = 0.12
Identities = 32/107 (29%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------PPGSTGSGGPTGPT 537
GP GP PIGP+G G G GP G PPG G G GP+
Sbjct: 1105 GPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1164
Query: 538 --------VSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
V P P +GPN GA+ PQ P
Sbjct: 1165 GEKGETGDVGPMGPPGPPGPRGPAGPN------------GADGPQGP 1199
Score = 35.8 bits (81), Expect = 0.12
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 490 GPVGPVTPIGPIGP---------IVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GPVGP P G GP + G G GP GP PPG G G G
Sbjct: 1351 GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1405
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+G G G G P P GPIGP+G G A G G+ GP G
Sbjct: 1089 VGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G +G G P P G +GP G G P G G GP GP P
Sbjct: 904 GHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963
Query: 550 TSESGP 555
++ P
Sbjct: 964 GTKGDP 969
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G GP P GP+G GP G G G G G + AP + T P +GP
Sbjct: 1303 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGK-TGPVGPAGP 1358
Score = 34.3 bits (77), Expect = 0.35
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 477 TPGV-GVGVLGTAIGPVGPVTPIGPIG-PIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
TPG G+ AIGP G P G G P +P + GP G G GP G+ G GP
Sbjct: 653 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD-GPPGHPGKEGPPGTKGNQGPSGPQ 711
Query: 535 GP 536
GP
Sbjct: 712 GP 713
Score = 33.9 bits (76), Expect = 0.46
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS---------TGSGGPTGP--TV 538
GP GP G GP P GP GP GP G PG G GP GP V
Sbjct: 868 GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVV 927
Query: 539 SSAAPSETTSPTSESG 554
+ T P E G
Sbjct: 928 GPQGAAGETGPMGERG 943
Score = 33.9 bits (76), Expect = 0.46
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 22/105 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAA------------------PPGSTGSG 531
GP+GP G GP+ P GP G G G PPG G
Sbjct: 1054 GPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI 1113
Query: 532 GPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
GP G ++ A E GP F + + G N P P
Sbjct: 1114 GPVGQPGAAGADGE----PGARGPQGHFGAKGDEGTRGFNGPPGP 1154
Score = 33.9 bits (76), Expect = 0.46
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P+ PGV G G G VG G G P GP GPIGP G G+ G G
Sbjct: 1073 PAGPPGVA-GEDGDK-GEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1130
Query: 534 TGP 536
GP
Sbjct: 1131 RGP 1133
Score = 33.5 bits (75), Expect = 0.60
Identities = 26/81 (32%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP------------------PGSTGSG 531
GP GP P G GP P+G G GP G P PGS G
Sbjct: 1249 GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1308
Query: 532 GPTGPTVSSAAPSETTSPTSE 552
G GP SP SE
Sbjct: 1309 GENGPPGPLGKRGPAGSPGSE 1329
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE---- 545
G GP P G +G + P G G G G PG G G G S P E
Sbjct: 1192 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1251
Query: 546 -TTSPTSESGP 555
PT + GP
Sbjct: 1252 GPKGPTGDDGP 1262
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/54 (37%), Positives = 20/54 (37%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP G G G P GP G G GP P G G GP GP P
Sbjct: 850 GPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903
Score = 32.7 bits (73), Expect = 1.0
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G G G P GP GP G GP PG G G GP P
Sbjct: 1231 GPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPP-GEGGPRGQDGA 1289
Query: 550 TSESGPNQQFIQQMVQALAGANAPQLP 576
+ G + + Q G N P P
Sbjct: 1290 KGDRGEDGEPGQPGSPGPTGENGPPGP 1316
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/47 (40%), Positives = 20/47 (42%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
IG G +G G P GP G GPTG PPG G G G
Sbjct: 750 IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLG 796
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 474 PSFTPGVGV----GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
P F +GV G +G G G P GP G P GP G +G G PG G
Sbjct: 744 PGFKGDIGVKGDRGEVGVP-GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPG 802
Query: 530 SGGPTGPTVSSAAP 543
G GP S P
Sbjct: 803 YPGRQGPKGSLGFP 816
Score = 32.0 bits (71), Expect = 1.8
Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGP--------------------- 521
G GT+ G GP P G G P P G GP GP GP
Sbjct: 859 GAKGTSGGD-GPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 917
Query: 522 AAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
PPG G GP G + E P P +Q
Sbjct: 918 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQ 954
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 483 GVLGTA--IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
G+ GTA G G P G G P G G G G A PG G+ GP+GP +
Sbjct: 955 GLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA 1014
Query: 541 AAPSE 545
+P E
Sbjct: 1015 GSPGE 1019
Score = 31.2 bits (69), Expect = 3.0
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 490 GPVGPVTPIGPIGPI----------VPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
GP G P G GP VP P G GP G G PG++G G G +
Sbjct: 772 GPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLS 831
Query: 538 VSSAAPSE--TTSPTSESGPNQQFIQQMVQALAGANAPQLPNPE 579
S E T P + GP + + +G + P P E
Sbjct: 832 GKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 875
Score = 30.4 bits (67), Expect = 5.1
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 490 GPVGPVTPIGPIGPI-------VPFTPIGPIGPIGPTGPAAPP---------GSTGSGGP 533
GP G GP G +P T GP G G GP+ PP G+ GSGGP
Sbjct: 970 GPPGAPGKDGPAGLRGFPGERGLPGTAGGP-GLKGNEGPSGPPGPAGSPGERGAAGSGGP 1028
Query: 534 TGP 536
GP
Sbjct: 1029 IGP 1031
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/60 (33%), Positives = 21/60 (35%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP G P G G G GP GP G PG G G GP P + P
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903
Score = 30.0 bits (66), Expect = 6.7
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 474 PSFTPGV-GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGG 532
P+ PG G+ L ++G G G GP P P G G G G G G G
Sbjct: 1358 PAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1417
Query: 533 PTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQA---LAGANAPQLPNP 578
GP + P + P Q+ + A + P LP P
Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1466
Score = 29.6 bits (65), Expect = 8.7
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGA 570
G G GP G P G G GP G T S A + P ++ G
Sbjct: 829 GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGER----------GL 878
Query: 571 NAPQLPN 577
PQ PN
Sbjct: 879 PGPQGPN 885
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 497 PIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
P GP GP P P+GP GP GPTG PG G GPTGP S P E
Sbjct: 291 PQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGE 339
Score = 51.6 bits (122), Expect = 2e-06
Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIG------------------- 514
P +PG G +GT G GP P GP GP P P+GP
Sbjct: 230 PPGSPG-RAGAVGTP-GERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETN 287
Query: 515 ---PIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE--TTSPTSESGPNQQFIQQMVQALAG 569
P GPTGP PPG G GP GPT +P PT G + ++ + L G
Sbjct: 288 NHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGERGLRG 347
Query: 570 ANAPQ 574
PQ
Sbjct: 348 EPGPQ 352
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 490 GPVGPVTPIGPIGPI----VPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP GP P+GP GP VP +P IGP GP GP G + PG G G G +
Sbjct: 296 GPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSA 355
Query: 544 SETTSPTSESGPNQQ 558
+ P + P ++
Sbjct: 356 GQRGEPGPKGDPGEK 370
Score = 42.0 bits (97), Expect = 0.002
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
GP GP GP+G GP GP PPGS G G G T P P GP
Sbjct: 205 GPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVG-TPGERGPPGPPGPPGPPGP 260
Score = 40.8 bits (94), Expect = 0.004
Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 481 GVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPP------GSTGSGGPT 534
G G L +G G P GP G P+G GP GP GP P G+ G GP
Sbjct: 190 GDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPP 249
Query: 535 GPTVSSAAPSETTSPTSESGPNQQFIQQ 562
GP P P + GP I Q
Sbjct: 250 GP----PGPPGPPGPPAPVGPPHARISQ 273
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/70 (35%), Positives = 27/70 (38%)
Query: 480 VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVS 539
VG L GP G GP+G P P GP G G G PG G GP GP
Sbjct: 198 VGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGP 257
Query: 540 SAAPSETTSP 549
P+ P
Sbjct: 258 PGPPAPVGPP 267
Score = 37.4 bits (85), Expect = 0.042
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 490 GPVGPVTPIGPIGP---------IVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSS 540
GP GP+ P GP GP I P P GP G G G G G GP G
Sbjct: 299 GPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSAGQR 358
Query: 541 AAPSETTSPTSES 553
P P +S
Sbjct: 359 GEPGPKGDPGEKS 371
Score = 29.6 bits (65), Expect = 8.7
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 505 VPFTPIGPIGPIGPTGPAAPPGSTGSG------------GPTGP--TVSSAAPSETTSPT 550
VP TP P P GP GS G G GPTGP S P P
Sbjct: 166 VPPTPATPEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPP 225
Query: 551 SESGP 555
GP
Sbjct: 226 GPQGP 230
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 52.0 bits (123), Expect = 2e-06
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 527 STGSGGPTGPTVSSAAPSETTSPTS---ESGP---NQQFIQQMVQALAGANAPQLPNPEV 580
ST PT + S TSP S +SG N F Q + AL + P L +
Sbjct: 280 STPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQS--- 336
Query: 581 RFQQQLEQLNAMGFLNREANLQALIATGGDINAAIE 616
++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 337 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 38.1 bits (87), Expect = 0.024
Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 52/345 (15%)
Query: 53 SVQQFKEAISKRFKSQT---DQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQ 109
S+ K+ I+ + + + + LI+ G+ LKD TL +GI G TVH++ KS P
Sbjct: 39 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPD 98
Query: 110 GQSTQPSNAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQS 169
+ A +S+ SS + +
Sbjct: 99 QKPEPVDKVAAMREFRVLHTALHSS--------------------SSYREAVFKMLSNKE 138
Query: 170 QMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQM-QQLIQRNPEISHLLNNP 228
+ Q ++A+P + +P +L + DL + A+P M L+ +P + +
Sbjct: 139 SLDQIIVATP----GLSSDPIALGVLQDKDLFS--VFADPNMLDTLVPAHPALVNA---- 188
Query: 229 DIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFG 288
I+ +A + M ++ + S+ +PGG+ + D + N
Sbjct: 189 -IVLVLHSVAGSAPMPGTDSSSRSMPSSSYRDMPGGF-LFEGLSDDEDDFHPNTRSTPSS 246
Query: 289 GNPFASVGSSSSSGEGTQPSRTENR---------DPLPNPWAPPPATQSSATTSTTTSTG 339
P + S SG T++ P + P P TQ ++ ++ S+G
Sbjct: 247 STPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGTQGHSSGTSPMSSG 306
Query: 340 SGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQITENPQLIQ 384
SG +N + A + P +QS Q PQL Q
Sbjct: 307 VQSGTPITNDLFS--QALQHALQASGQPSLQSQWQ-----PQLQQ 344
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 52.0 bits (123), Expect = 2e-06
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 527 STGSGGPTGPTVSSAAPSETTSPTS---ESGP---NQQFIQQMVQALAGANAPQLPNPEV 580
ST PT + S TSP S +SG N F Q + AL + P L +
Sbjct: 280 STPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQS--- 336
Query: 581 RFQQQLEQLNAMGFLNREANLQALIATGGDINAAIE 616
++Q QL+QL MG + E +L+AL ATGGDI AA+E
Sbjct: 337 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 38.1 bits (87), Expect = 0.024
Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 52/345 (15%)
Query: 53 SVQQFKEAISKRFKSQT---DQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQ 109
S+ K+ I+ + + + + LI+ G+ LKD TL +GI G TVH++ KS P
Sbjct: 39 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPD 98
Query: 110 GQSTQPSNAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQS 169
+ A +S+ SS + +
Sbjct: 99 QKPEPVDKVAAMREFRVLHTALHSS--------------------SSYREAVFKMLSNKE 138
Query: 170 QMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQM-QQLIQRNPEISHLLNNP 228
+ Q ++A+P + +P +L + DL + A+P M L+ +P + +
Sbjct: 139 SLDQIIVATP----GLSSDPIALGVLQDKDLFS--VFADPNMLDTLVPAHPALVNA---- 188
Query: 229 DIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFG 288
I+ +A + M ++ + S+ +PGG+ + D + N
Sbjct: 189 -IVLVLHSVAGSAPMPGTDSSSRSMPSSSYRDMPGGF-LFEGLSDDEDDFHPNTRSTPSS 246
Query: 289 GNPFASVGSSSSSGEGTQPSRTENR---------DPLPNPWAPPPATQSSATTSTTTSTG 339
P + S SG T++ P + P P TQ ++ ++ S+G
Sbjct: 247 STPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGTQGHSSGTSPMSSG 306
Query: 340 SGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQITENPQLIQ 384
SG +N + A + P +QS Q PQL Q
Sbjct: 307 VQSGTPITNDLFS--QALQHALQASGQPSLQSQWQ-----PQLQQ 344
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 50.8 bits (120), Expect = 4e-06
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGP------IGPTGPAAPPGSTGSGGPTGP 536
GP GP P+GP G P+GPIGP +G GP PPG G GP GP
Sbjct: 1173 GPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGP 1225
Score = 50.1 bits (118), Expect = 6e-06
Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAA 542
G G+A G GP P GP GP+ P G GP+GP GP GS G GP GP
Sbjct: 1161 GEQGSA-GIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGP 1219
Query: 543 PSETTSP 549
P P
Sbjct: 1220 PGPPGPP 1226
Score = 49.7 bits (117), Expect = 8e-06
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 470 PGLI-PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST 528
PGL P+ TPG +GP G GP GP+ P GP+G GP GPA G+
Sbjct: 1007 PGLPGPAGTPG--------KVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 529 GSGGPTGPTVSSAAPSETTSPTSESGP 555
G G G P P S+ P
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPGSQGAP 1085
Score = 49.3 bits (116), Expect = 1e-05
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 479 GVGVGVLGTAIGPVGPVTP---------IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
G VG++ ++GPVGP P GP GP GP+GPIG GP PPG G
Sbjct: 205 GSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPG 264
Query: 530 SGGPTGPTVSSAAPSETTSPTSESGP 555
G G + SP + P
Sbjct: 265 EDGEPGRNGNPGEVGFAGSPGARGFP 290
Score = 48.9 bits (115), Expect = 1e-05
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 488 AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPT------GPTVSSA 541
A G GP+ P GP GP GP G +GP G PGS G GPT GP
Sbjct: 796 ARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDG 855
Query: 542 APSETTSPTSESGPNQQFIQQMVQALAGANAPQLPN 577
P P E G Q LAG+ P PN
Sbjct: 856 QPGVKGEP-GEPGQKGDAGSPGPQGLAGSPGPHGPN 890
Score = 48.1 bits (113), Expect = 2e-05
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG--PTVSSAAPSETT 547
GP GP G G PF P GP GP+GP+G PG G GP G +V A P
Sbjct: 1155 GPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPE--- 1211
Query: 548 SPTSESGP 555
P E GP
Sbjct: 1212 GPPGEPGP 1219
Score = 45.4 bits (106), Expect = 2e-04
Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 490 GPVGPVTPIG------PIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP GPV P G P+GPI P G +G GP GP PG G GP G
Sbjct: 1176 GPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPG 1227
Score = 43.9 bits (102), Expect = 4e-04
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVS------SAAPSETTSPTSE 552
G +GP+ P P G G G GP PPG G GP GP S P E P
Sbjct: 213 GSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRN 272
Query: 553 SGPNQQFIQQMVQALAGANAPQLP 576
P + A AP LP
Sbjct: 273 GNPGEVGFAGSPGARGFPGAPGLP 296
Score = 43.9 bits (102), Expect = 4e-04
Identities = 24/66 (36%), Positives = 27/66 (40%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G G V P GP G P P+G G GP G PGS G G GP P + P
Sbjct: 912 GSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDP 971
Query: 550 TSESGP 555
+ P
Sbjct: 972 GEDGQP 977
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG-PTVS-- 539
G+ G A GP G P GP G P GP+G G G G+ G+ GPTG P S
Sbjct: 384 GMKGEA-GPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGP 442
Query: 540 --SAAPSETTSPTSESGP 555
SA P + P +GP
Sbjct: 443 PGSAGPPGSPGPQGSTGP 460
Score = 42.4 bits (98), Expect = 0.001
Identities = 24/63 (38%), Positives = 27/63 (42%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
GP G P GPIGP G G P G G+ GP GP AP P S+ P +
Sbjct: 480 GPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPK 539
Query: 559 FIQ 561
Q
Sbjct: 540 GAQ 542
Score = 42.0 bits (97), Expect = 0.002
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP------------PGSTGSGGPTGP 536
+GP GPV P G G P GP G G GP P PG G+ GP GP
Sbjct: 650 VGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGP 709
Query: 537 TVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLP 576
P E P P + + +AG + P P
Sbjct: 710 RGERGNPGERGEPGITGLPGE-------KGMAGGHGPDGP 742
Score = 41.6 bits (96), Expect = 0.002
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 440 PDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIG 499
PD LS + A A + + GL + PG + P G+ G G GP P G
Sbjct: 184 PDGLSRPFS--AQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQ-GGAGPTGPPG 240
Query: 500 PIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G P PIG GP GP G G G G G + +P P + P
Sbjct: 241 EPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLP 296
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/71 (42%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 490 GPVG-PVTP--IGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSET 546
GPVG P P IG G P G G GP G A PPGS G G TGP P +
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP 470
Query: 547 TSP--TSESGP 555
P E+GP
Sbjct: 471 GVPGFKGEAGP 481
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 470 PGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTG 529
PGL+P T G+ G GP GP GP G P GP GP G G PG G
Sbjct: 118 PGLVPVVT-----GIRGRP-GPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPG 171
Query: 530 SGGPTG 535
+ GP G
Sbjct: 172 APGPPG 177
Score = 40.4 bits (93), Expect = 0.005
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 482 VGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSA 541
VG G+ G GP P+G +GP+ P G G +GP G G+ G G GP
Sbjct: 314 VGAPGSK-GEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLG 372
Query: 542 APSETTSP-----TSESGPNQQFIQQMVQALAGANAPQLP 576
P + P E+GP + Q G P P
Sbjct: 373 IPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGP 412
Score = 38.5 bits (88), Expect = 0.019
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G +GP GP GP G G GP GPT P P P Q
Sbjct: 648 GEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQ 695
Score = 38.1 bits (87), Expect = 0.024
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
G GP +G G P GP+G +GP GP PG G GP G
Sbjct: 306 GLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQG 351
Score = 38.1 bits (87), Expect = 0.024
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
GP+GP G GP +GP GP+G G G GS G GP A E P
Sbjct: 492 GPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGP---KGAQGE-RGP 547
Query: 550 TSESGP 555
SGP
Sbjct: 548 VGSSGP 553
Score = 38.1 bits (87), Expect = 0.024
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P GV A G G V P GP+GP G G G GP P G G GP
Sbjct: 629 PGEAGNAGVPGQRGAPGKDGEVGPSGPVGPP------GLAGERGEQGPPGPTGFQGLPGP 682
Query: 534 TGPTVSSAAPSETTSP 549
GP P + P
Sbjct: 683 PGPPGEGGKPGDQGVP 698
Score = 37.7 bits (86), Expect = 0.032
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 440 PDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVG-VGVLGTAIGPVGPVTPI 498
P L+ P + ++ G T+ P F G VG G A P GP P+
Sbjct: 877 PQGLAGSPGPHGPNGVPGLKGGR---GTQGPPGATGFPGSAGRVGPPGPAGAP-GPAGPL 932
Query: 499 GPIG----PIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESG 554
G G P + P G G +G GPA PPG G G G P P +G
Sbjct: 933 GEPGKEGPPGLRGDP-GSHGRVGDRGPAGPPGGPGDKGDPGED-GQPGPDGPPGPAGTTG 990
Query: 555 PNQQFIQQMVQALAGANAPQLPNP 578
Q+ I M P LP P
Sbjct: 991 --QRGIVGMPGQRGERGMPGLPGP 1012
Score = 37.0 bits (84), Expect = 0.054
Identities = 33/93 (35%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 467 TEAPGLIPSFTPGV--GVGVLGT--AIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPA 522
T PG P +PG+ +G GT A GP G GP G P GP G GP G
Sbjct: 407 TGPPG--PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIR 464
Query: 523 APPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
PG G G G A P P GP
Sbjct: 465 GQPGDPGVPGFKG----EAGPKGEPGPHGIQGP 493
Score = 37.0 bits (84), Expect = 0.054
Identities = 26/58 (44%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
PGV G G A GP G P G GPI P G GP G G PPG G G G
Sbjct: 470 PGVP-GFKGEA-GPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPG 525
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 488 AIGPVGPVTPIGPIG----PIVPFTP--IGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSA 541
A+GP+GP G G P + P G G GP GP PG +G+ G TGP
Sbjct: 703 AVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQG 762
Query: 542 APSE-----TTSPTSESG 554
P E T P + G
Sbjct: 763 MPGERGIAGTPGPKGDRG 780
Score = 36.2 bits (82), Expect = 0.093
Identities = 32/82 (39%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 478 PG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
PG VG L AIG G GP G P T GP G GP G P GSTG G G
Sbjct: 410 PGPVGSPGLPGAIGTDGTPGAKGPTGS--PGTS-GPPGSAGPPGSPGPQGSTGPQGIRGQ 466
Query: 537 TVSSAAP--SETTSPTSESGPN 556
P P E GP+
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPH 488
Score = 36.2 bits (82), Expect = 0.093
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGP------------IGPIGPTGPAAPPGSTGSGGPTGPT 537
G GP P GP G +G GP G G P G+TG GP GP
Sbjct: 975 GQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGP- 1033
Query: 538 VSSAAPSETTSPTSESGP 555
P + P E GP
Sbjct: 1034 ---VGPPGSNGPVGEPGP 1048
Score = 34.3 bits (77), Expect = 0.35
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 35/94 (37%)
Query: 490 GPVGPVTPIGPIGPI----------------------VPFTPIGPIGPIG---------- 517
GP GP+ +GP+GP +P P GP+GP+G
Sbjct: 324 GPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKP-GPMGPLGIPGSSGFPGN 382
Query: 518 --PTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G A P G+ G GP G + P SP
Sbjct: 383 PGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP 416
Score = 33.9 bits (76), Expect = 0.46
Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGST---GSGGPTGPTVSSAAPSET 546
G G P G G P P G G G G PPG+T GS G GP + AP
Sbjct: 870 GDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPG-P 928
Query: 547 TSPTSESG 554
P E G
Sbjct: 929 AGPLGEPG 936
Score = 33.5 bits (75), Expect = 0.60
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G P G +G GP GP+G GP P G G G GP
Sbjct: 303 GHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGP 349
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
G G P G +GP+ G GP G G PGS G GP G + P E
Sbjct: 576 GNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGE 631
Score = 32.3 bits (72), Expect = 1.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G +GP+ G G P IG G G G P GS+G G G ++ P + +P
Sbjct: 585 GKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAP 644
Query: 550 --TSESGPN 556
E GP+
Sbjct: 645 GKDGEVGPS 653
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G +GP+ P G G G G PG G G GP +P + +P P Q
Sbjct: 702 GAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQ 761
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
GP G + P G G GP G G GS G GP SS P + + P Q+
Sbjct: 582 GPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQR 641
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 21/54 (38%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAP 543
GP G V GP GP G G G G A PG G G GP + P
Sbjct: 840 GPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVP 893
Score = 31.2 bits (69), Expect = 3.0
Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G GP+ G G G GP PPG G G GP P + G Q
Sbjct: 1086 GTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP----QGPRGDKGDHGDRGDRGQ 1141
Query: 559 FIQQMVQALAGANAPQLPNPE 579
+ L G P PN E
Sbjct: 1142 KGHRGFTGLQGLPGPPGPNGE 1162
Score = 30.8 bits (68), Expect = 3.9
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 469 APGLIPSFTPG-VGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGS 527
+PG PS TPG G L G G GP G G G G G PG
Sbjct: 745 SPG--PSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGP 802
Query: 528 TGSGGPTGPTVSSAAP 543
G GP GPT P
Sbjct: 803 LGPPGPAGPTGEKGEP 818
Score = 30.8 bits (68), Expect = 3.9
Identities = 24/62 (38%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 474 PSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
P+ PG G GT GPVG G G PIGP G G G P G G G
Sbjct: 1075 PAGLPG-SQGAPGTP-GPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGD 1132
Query: 534 TG 535
G
Sbjct: 1133 HG 1134
>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
sapiens]
Length = 333
Score = 50.8 bits (120), Expect = 4e-06
Identities = 24/47 (51%), Positives = 25/47 (53%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G V P GP GP P+GP G GP GP PG G GPTGP
Sbjct: 125 GNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGP 171
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+GP GP P G IGP+ P GP+GPIG GP G TG G G
Sbjct: 130 VGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPG 176
Score = 43.1 bits (100), Expect = 8e-04
Identities = 21/46 (45%), Positives = 23/46 (50%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP G + P+GP G P PIG GP G GP P G G G G
Sbjct: 137 GPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRG 182
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G G + P P GP G IGP GP PG G G GP A P T P
Sbjct: 116 GETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPK-GEAGP---TGP 171
Query: 550 TSESG 554
E G
Sbjct: 172 QGEPG 176
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP+ G G P G G +GPTGP P G+ G GPTG P P
Sbjct: 104 GLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTG-LPGPMGPIGKPGP 162
Query: 550 TSESGP 555
E+GP
Sbjct: 163 KGEAGP 168
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 485 LGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPS 544
L +G G GP G +GP GP GP G P G TG GP GP + P
Sbjct: 105 LAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGP-IGKPGPK 163
Query: 545 ETTSPTSESG 554
PT G
Sbjct: 164 GEAGPTGPQG 173
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
P +G LG G GP+ PIG GP P GP G G G G G G G T
Sbjct: 138 PRGNIGPLGPT-GLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGET 196
Query: 538 V 538
+
Sbjct: 197 L 197
Score = 33.5 bits (75), Expect = 0.60
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G GP P+G G G TGP G+ G GPTGP PT GP
Sbjct: 98 GKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPE-GPRGNIGPLGPTGLPGPMGP 156
Query: 559 FIQQMVQALAGANAPQ 574
+ + AG PQ
Sbjct: 157 IGKPGPKGEAGPTGPQ 172
Score = 29.6 bits (65), Expect = 8.7
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G GP G A P G G G TGP + PT GP
Sbjct: 95 GSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGD-VGPTGPEGP 138
>gi|65301115 C1q and tumor necrosis factor related protein 9 [Homo
sapiens]
Length = 333
Score = 50.8 bits (120), Expect = 4e-06
Identities = 24/47 (51%), Positives = 25/47 (53%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G V P GP GP P+GP G GP GP PG G GPTGP
Sbjct: 125 GNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGP 171
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 489 IGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
+GP GP P G IGP+ P GP+GPIG GP G TG G G
Sbjct: 130 VGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPG 176
Score = 43.1 bits (100), Expect = 8e-04
Identities = 21/46 (45%), Positives = 23/46 (50%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTG 535
GP G + P+GP G P PIG GP G GP P G G G G
Sbjct: 137 GPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRG 182
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP G G + P P GP G IGP GP PG G G GP A P T P
Sbjct: 116 GETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPK-GEAGP---TGP 171
Query: 550 TSESG 554
E G
Sbjct: 172 QGEPG 176
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 490 GPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSP 549
G GP+ G G P G G +GPTGP P G+ G GPTG P P
Sbjct: 104 GLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTG-LPGPMGPIGKPGP 162
Query: 550 TSESGP 555
E+GP
Sbjct: 163 KGEAGP 168
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 485 LGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPS 544
L +G G GP G +GP GP GP G P G TG GP GP + P
Sbjct: 105 LAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGP-IGKPGPK 163
Query: 545 ETTSPTSESG 554
PT G
Sbjct: 164 GEAGPTGPQG 173
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 478 PGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPT 537
P +G LG G GP+ PIG GP P GP G G G G G G G T
Sbjct: 138 PRGNIGPLGPT-GLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGET 196
Query: 538 V 538
+
Sbjct: 197 L 197
Score = 33.5 bits (75), Expect = 0.60
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 499 GPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQ 558
G GP P+G G G TGP G+ G GPTGP PT GP
Sbjct: 98 GKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPE-GPRGNIGPLGPTGLPGPMGP 156
Query: 559 FIQQMVQALAGANAPQ 574
+ + AG PQ
Sbjct: 157 IGKPGPKGEAGPTGPQ 172
Score = 29.6 bits (65), Expect = 8.7
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 511 GPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
G G GP G A P G G G TGP + PT GP
Sbjct: 95 GSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGD-VGPTGPEGP 138
>gi|239753818 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 50.1 bits (118), Expect = 6e-06
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G+ P+ P P GPIGP PF+P GP+GP P P +P GP P
Sbjct: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 496 TPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
TP P P P +P GP GPIGPT P +P G G P P S +P+ + P P
Sbjct: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPW-SPFSPARPSGPVLPLKP 75
Query: 556 NQQF 559
+++F
Sbjct: 76 SERF 79
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 486 GTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
G+ P P++P GP GPI P +P P GP+GP P +P P+GP V PSE
Sbjct: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP-VLPLKPSE 77
>gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo
sapiens]
Length = 148
Score = 50.1 bits (118), Expect = 6e-06
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536
G G+ P+ P P GPIGP PF+P GP+GP P P +P GP P
Sbjct: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 496 TPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555
TP P P P +P GP GPIGPT P +P G G P P S +P+ + P P
Sbjct: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPW-SPFSPARPSGPVLPLKP 75
Query: 556 NQQF 559
+++F
Sbjct: 76 SERF 79
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 486 GTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545
G+ P P++P GP GPI P +P P GP+GP P +P P+GP V PSE
Sbjct: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP-VLPLKPSE 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,722,770
Number of Sequences: 37866
Number of extensions: 1368665
Number of successful extensions: 29015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 11077
Number of HSP's gapped (non-prelim): 9595
length of query: 624
length of database: 18,247,518
effective HSP length: 108
effective length of query: 516
effective length of database: 14,157,990
effective search space: 7305522840
effective search space used: 7305522840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.