Guide to the Human Genome
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Name: UBL7 Sequence: fasta or formatted (380aa) NCBI GI: 41152107
Description:

ubiquitin-like 7

Referenced in:

Proteasome
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [380aa] ubiquitin-like 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         31           2
 C cysteine            0.3          1           1
 D aspartate           6.8         26           2
 E glutamate           4.2         16           1
 F phenylalanine       2.9         11           1
 G glycine             7.4         28           2
 H histidine           2.6         10           1
 I isoleucine          3.9         15           2
 K lysine              3.2         12           1
 L leucine            12.1         46           1
 M methionine          2.4          9           1
 N asparagine          1.3          5           1
 P proline             8.7         33           1
 Q glutamine           6.3         24           2
 R arginine            3.4         13           1
 S serine             13.7         52           4
 T threonine           5.5         21           1
 V valine              4.5         17           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-like 7 
UBL7                  1.000   ubiquitin-like 7 
UBQLN2                0.037   ubiquilin 2 
UBQLN4                0.037   ataxin-1 ubiquitin-like interacting protein 
UBQLN1                0.034   ubiquilin 1 isoform 2 
UBQLN1                0.034   ubiquilin 1 isoform 1 
UBQLN3                0.025   ubiquilin 3 
C13orf23              0.025   hypothetical protein LOC80209 isoform 2 
C13orf23              0.025   hypothetical protein LOC80209 isoform 1 
ANKS6                 0.023   ankyrin repeat and sterile alpha motif domain contai...
SNAP91                0.022   synaptosomal-associated protein, 91kDa homolog 
TOB1                  0.021   transducer of ERBB2, 1 
ZMIZ2                 0.021   zinc finger, MIZ-type containing 2 isoform 1 
SNIP                  0.021   SNAP25-interacting protein 
ZMIZ2                 0.021   zinc finger, MIZ-type containing 2 isoform 2 
NR4A1                 0.019   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.019   nuclear receptor subfamily 4, group A, member 1 [Hom...
MUC17                 0.018   mucin 17 
POLR2A                0.018   DNA-directed RNA polymerase II A 
NUP62                 0.017   nucleoporin 62kDa 
NUP62                 0.017   nucleoporin 62kDa 
NUP62                 0.017   nucleoporin 62kDa 
NUP62                 0.017   nucleoporin 62kDa 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 2 
HCN4                  0.015   hyperpolarization activated cyclic nucleotide-gated p...
RXRB                  0.015   retinoid X receptor, beta 
SP4                   0.015   Sp4 transcription factor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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