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Search of human proteins with 166235178
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo
sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens] 655 0.0
gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens] 540 e-154
gi|13994151 PDZ and LIM domain 1 [Homo sapiens] 342 3e-94
gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens] 263 2e-70
gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens] 157 9e-39
gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens] 143 2e-34
gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens] 137 2e-32
gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens] 122 3e-28
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 122 3e-28
gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens] 120 2e-27
gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens] 119 5e-27
gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens] 106 2e-23
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 106 2e-23
gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens] 98 8e-21
gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens] 95 7e-20
gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens] 90 3e-18
gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens] 87 1e-17
gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens] 87 1e-17
gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens] 87 1e-17
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 65 6e-11
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 59 6e-09
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 59 6e-09
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 59 6e-09
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 56 4e-08
gi|194272207 actin binding LIM protein family, member 2 isoform ... 53 4e-07
gi|153792514 actin binding LIM protein family, member 2 isoform ... 53 4e-07
gi|194272204 actin binding LIM protein family, member 2 isoform ... 53 4e-07
gi|194272202 actin binding LIM protein family, member 2 isoform ... 53 4e-07
gi|194272200 actin binding LIM protein family, member 2 isoform ... 53 4e-07
gi|194272198 actin binding LIM protein family, member 2 isoform ... 53 4e-07
>gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens]
Length = 316
Score = 655 bits (1689), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
Query: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP 180
RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPTASVP 180
Query: 181 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA 240
PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA
Sbjct: 181 PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGA 240
Query: 241 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR 300
QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR
Sbjct: 241 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARAR 300
Query: 301 TKPPEGYDTVTLYPKA 316
TKPPEGYDTVTLYPKA
Sbjct: 301 TKPPEGYDTVTLYPKA 316
>gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens]
Length = 364
Score = 540 bits (1391), Expect = e-154
Identities = 275/364 (75%), Positives = 288/364 (79%), Gaps = 48/364 (13%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQ+ HN
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
Query: 121 RRAQPFVA------------------------------------------AANIDDKRQ- 137
R +PFV A NI + +
Sbjct: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
Query: 138 ----VVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSP-QNEPTASVPPESDVYRMLHDN 192
+V A +N+P+ LYS NI + L GQ+ + +P +EPTASVPPESDVYRMLHDN
Sbjct: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN 240
Query: 193 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 252
RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
Sbjct: 241 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 300
Query: 253 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 312
IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
Sbjct: 301 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 360
Query: 313 YPKA 316
YPKA
Sbjct: 361 YPKA 364
>gi|13994151 PDZ and LIM domain 1 [Homo sapiens]
Length = 329
Score = 342 bits (877), Expect = 3e-94
Identities = 170/326 (52%), Positives = 218/326 (66%), Gaps = 13/326 (3%)
Query: 3 QTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Q + L GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 4 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTH 63
Query: 63 ADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRR 122
+AQ+RIK L L + R E +WSP V+E+GK HP+K+NL SEPQE IG+AHNR
Sbjct: 64 LEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRS 123
Query: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQD---------ALHGQLRGLIPSSPQN 173
A PF A+ +V++ YN+P GLYS+ NI + A G P
Sbjct: 124 AMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLDHAQ 183
Query: 174 EPTASV-PPESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDD---GSDDRPAGTRSVRAP 229
P++ V ES+VY+ML + + P+QS SF VLQ +++ G ++P+G RSV+AP
Sbjct: 184 PPSSLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAP 243
Query: 230 VTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEG 289
VTKV G AQ++P+CDKCG+GIVG VK RD++RHPEC+VC DC NLKQKG+FF+E
Sbjct: 244 VTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVED 303
Query: 290 ELYCETHARARTKPPEGYDTVTLYPK 315
++YCE HAR R PPEGY+ VT++PK
Sbjct: 304 QIYCEKHARERVTPPEGYEVVTVFPK 329
>gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens]
Length = 330
Score = 263 bits (672), Expect = 2e-70
Identities = 146/332 (43%), Positives = 196/332 (59%), Gaps = 23/332 (6%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
TH +AQ+RIK L L + R E W P +D KA +I+++ E Q+ P +
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTSR-- 117
Query: 121 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGLIPSSPQN-EPTA 177
+P +D R + + Y P + + + L Q+ L S P + +P
Sbjct: 118 ---RPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR 174
Query: 178 SVPPE--------SDVYRMLHDNRNEPT--QPRQSGSFRVLQGMVDDGSDDR---PAGTR 224
+P S+VYRML + EP +P+QSGSFR LQGM++ G P G R
Sbjct: 175 GLPRSRDCRVDLGSEVYRMLREPA-EPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPR 233
Query: 225 SVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY 284
+++ +K+ G Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+GY
Sbjct: 234 NLKPTASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGY 293
Query: 285 FFIEGELYCETHARARTKPPEGYDTVTLYPKA 316
FF++ LYCE+HA+AR KPPEGYD V +YP A
Sbjct: 294 FFLDERLYCESHAKARVKPPEGYDVVAVYPNA 325
>gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens]
Length = 352
Score = 157 bits (398), Expect = 9e-39
Identities = 109/347 (31%), Positives = 167/347 (48%), Gaps = 45/347 (12%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDR----------GETHLWSPQVSEDGKAHPFKINLESEPQ 110
HA+AQ +I+ + L L++DR G++ L G + + S
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS 120
Query: 111 EFKPIGTAHNRRAQPF---------VAAANIDDKRQVVSASYNSP----IGLYSTSNIQD 157
+ + R PF A I Q ++ S P + +
Sbjct: 121 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ 180
Query: 158 ALHGQLRG----LIPSSPQNEPTASVPP------------ESDVYRMLHDNRNEPTQPRQ 201
A G+ ++P SP P +S P +S+V++ML +NR PRQ
Sbjct: 181 AGLGRAGDSAVLVLPPSPG--PRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQ 238
Query: 202 SGSFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGSGGAQ--RMPLCDKCGSGIVGAVV 258
S SFR+LQ ++ + PA S +P + + A ++ C+KC + I V
Sbjct: 239 SSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAV 298
Query: 259 KARD-KYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPP 304
+ ++ +YRHP C+ CADC LNLK +G+F++ ELYCE HAR R P
Sbjct: 299 RIQEGRYRHPGCYTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAP 345
>gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens]
Length = 246
Score = 143 bits (360), Expect = 2e-34
Identities = 90/243 (37%), Positives = 126/243 (51%), Gaps = 20/243 (8%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
TH +AQ+RIK L L + R E W P +D KA +I+++ E Q+ P
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSP-----T 114
Query: 121 RRAQPFVAAANIDDKRQVVSASYNSP--IGLYSTSNIQDALHGQLRGL-IPSSPQNEPTA 177
+P +D R + + Y P + + + L Q+ L + P +P
Sbjct: 115 TSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPPPSADPAR 174
Query: 178 SVPPE--------SDVYRMLHDNRNEP--TQPRQSGSFRVLQGMVDDGSDDRPAGTRSVR 227
+P S+VYRML + EP +P+QSGSFR LQGM++ G P+
Sbjct: 175 GLPRSRDCRVDLGSEVYRMLREPA-EPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTS 233
Query: 228 APV 230
+ +
Sbjct: 234 STI 236
>gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens]
Length = 366
Score = 137 bits (344), Expect = 2e-32
Identities = 97/327 (29%), Positives = 154/327 (47%), Gaps = 41/327 (12%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDR----------GETHLWSPQVSEDGKAHPFKINLESEPQ 110
HA+AQ +I+ + L L++DR G++ L G + + S
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS 120
Query: 111 EFKPIGTAHNRRAQPF---------VAAANIDDKRQVVSASYNSP----IGLYSTSNIQD 157
+ + R PF A I Q ++ S P + +
Sbjct: 121 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ 180
Query: 158 ALHGQL--RGLIPSSPQNEPTASVP------------PESDVYRMLHDNRNEPTQPRQSG 203
A G+ ++ P P +S P +S+V++ML +NR PRQS
Sbjct: 181 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS 240
Query: 204 SFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGSGGA--QRMPLCDKCGSGIVGAVVKA 260
SFR+LQ ++ + PA S +P + + A ++ C+KC + I V+
Sbjct: 241 SFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQAVRI 300
Query: 261 RD-KYRHPECFVCADCNLNLKQKGYFF 286
++ +YRHP C+ CADC LNLK +G+F+
Sbjct: 301 QEGRYRHPGCYTCADCGLNLKMRGHFW 327
>gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens]
Length = 283
Score = 122 bits (307), Expect = 3e-28
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHL----WSPQVSEDGKAHPFKINLESEP------Q 110
TH +AQ++IK+A++ L L + + + + +P V P + + + P +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
Query: 111 EFKPIGTAHNR-RAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPS 169
F P + + + K ++ A YN+PI +YS I DA+ GQ +
Sbjct: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
Query: 170 SPQNEP--TASVPPESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 211
+ P +V S VY+ + ++N+P + QS SFR+L M
Sbjct: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 122 bits (307), Expect = 3e-28
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHL----WSPQVSEDGKAHPFKINLESEP------Q 110
TH +AQ++IK+A++ L L + + + + +P V P + + + P +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQE 120
Query: 111 EFKPIGTAHNR-RAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPS 169
F P + + + K ++ A YN+PI +YS I DA+ GQ +
Sbjct: 121 RFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSD 180
Query: 170 SPQNEP--TASVPPESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 211
+ P +V S VY+ + ++N+P + QS SFR+L M
Sbjct: 181 FSGSLPIKDLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
Score = 45.4 bits (106), Expect = 6e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
PLC KC + I+G V+ A + H CFVCA C + +GE YCE
Sbjct: 498 PLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE 548
Score = 40.0 bits (92), Expect = 0.003
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 240 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
+ R PLC C + I G + A + HPE F CA C +L + + +YCE
Sbjct: 435 SSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCE 489
Score = 32.0 bits (71), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 266 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 297
H CF+CA C++NL+ + ++ + C+ HA
Sbjct: 581 HDTCFICAVCHVNLEGQPFYSKKDRPLCKKHA 612
>gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens]
Length = 457
Score = 120 bits (301), Expect = 2e-27
Identities = 94/324 (29%), Positives = 142/324 (43%), Gaps = 35/324 (10%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFK------INLESEPQEF---KPI 115
AQ++I+A +L L + R + PQ + A P + ++L + F P
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGAPPPA 125
Query: 116 GTAHNRRAQPFVAAANIDDKRQVV--------------SASYNSPIGLYSTSNIQDALHG 161
+A + QP K++++ S S+ L T +QD
Sbjct: 126 DSAPQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEE 185
Query: 162 QLR--GLIPSSPQNEPTASVPPESDVYRMLHDNRNEP---TQPRQSGSFRVLQGMVDDGS 216
L+ +P + P +S P E + P P + + +
Sbjct: 186 HLKKSSQVPRTEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAPDKTSTVLTR 245
Query: 217 DDRPA-------GTRSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPEC 269
+PA T V+A V GG + P+C +C I G + A HPE
Sbjct: 246 HSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEE 305
Query: 270 FVCADCNLNLKQKGYFFIEGELYC 293
FVC+ C L++ G+F +G ++C
Sbjct: 306 FVCSQCGKVLEEGGFFEEKGAIFC 329
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
P C KC I G ++ A H CF CA C ++ + ++ EG YCE
Sbjct: 339 PSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCE 389
Score = 34.7 bits (78), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 266 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 297
H CFVCA C +NL+ K ++ + C++HA
Sbjct: 422 HDTCFVCAICQINLEGKTFYSKKDRPLCKSHA 453
>gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens]
Length = 423
Score = 119 bits (297), Expect = 5e-27
Identities = 89/301 (29%), Positives = 134/301 (44%), Gaps = 23/301 (7%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRRAQ 124
AQ++I+A +L L + R + PQ + P + L + + + + + R +
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLR-PLVPDASKQRLMENTEDWRPR 124
Query: 125 PFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLR--GLIPSSPQNEPTASVPPE 182
P S S+ L T +QD L+ +P + P +S P E
Sbjct: 125 PGTGQ----------SRSFRILAHLTGTEFMQDPDEEHLKKSSQVPRTEAPAPASSTPQE 174
Query: 183 SDVYRMLHDNRNEP---TQPRQSGSFRVLQGMVDDGSDDRPA-------GTRSVRAPVTK 232
+ P P + + + +PA T V+A
Sbjct: 175 PWPGPTAPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQSRTSIVQAAAGG 234
Query: 233 VHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELY 292
V GG + P+C +C I G + A HPE FVC+ C L++ G+F +G ++
Sbjct: 235 VPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIF 294
Query: 293 C 293
C
Sbjct: 295 C 295
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
P C KC I G ++ A H CF CA C ++ + ++ EG YCE
Sbjct: 305 PSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCE 355
Score = 34.7 bits (78), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 266 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 297
H CFVCA C +NL+ K ++ + C++HA
Sbjct: 388 HDTCFVCAICQINLEGKTFYSKKDRPLCKSHA 419
>gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens]
Length = 330
Score = 106 bits (265), Expect = 2e-23
Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 70/281 (24%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGET------------------------------HLWSP 90
TH +AQ++IK+A++ L L + + + L +P
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP 120
Query: 91 QVSEDGKAHPFKINLE----------SEPQEFKPIGTAHN---------RRAQPFVAAAN 131
S + +A P S P F + A + + P A
Sbjct: 121 SPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDL 180
Query: 132 IDDKRQVVSA---SYNSPIGLYSTSNIQD-------ALHGQLRGL-IPSSPQNEPTASVP 180
+ K S+ YN+PIGLYS +++ +L G+ G+ +P +V
Sbjct: 181 LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGSLPIKDLAVD 240
Query: 181 PESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 211
S VY+ + ++N+P + QS SFR+L M
Sbjct: 241 SASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 281
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 106 bits (265), Expect = 2e-23
Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 70/281 (24%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGET------------------------------HLWSP 90
TH +AQ++IK+A++ L L + + + L +P
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKDPALDTNGSLVAP 120
Query: 91 QVSEDGKAHPFKINLE----------SEPQEFKPIGTAHN---------RRAQPFVAAAN 131
S + +A P S P F + A + + P A
Sbjct: 121 SPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGARDL 180
Query: 132 IDDKRQVVSA---SYNSPIGLYSTSNIQD-------ALHGQLRGL-IPSSPQNEPTASVP 180
+ K S+ YN+PIGLYS +++ +L G+ G+ +P +V
Sbjct: 181 LGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGSLPIKDLAVD 240
Query: 181 PESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 211
S VY+ + ++N+P + QS SFR+L M
Sbjct: 241 SASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 281
Score = 45.4 bits (106), Expect = 6e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
PLC KC + I+G V+ A + H CFVCA C + +GE YCE
Sbjct: 608 PLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE 658
Score = 40.0 bits (92), Expect = 0.003
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 240 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
+ R PLC C + I G + A + HPE F CA C +L + + +YCE
Sbjct: 545 SSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCE 599
Score = 32.0 bits (71), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 266 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 297
H CF+CA C++NL+ + ++ + C+ HA
Sbjct: 691 HDTCFICAVCHVNLEGQPFYSKKDRPLCKKHA 722
>gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens]
Length = 222
Score = 98.2 bits (243), Expect = 8e-21
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRRAQ 124
AQ++I+A +L L + R + PQ + A P + F P + N+ A+
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYT-------FAP-SVSLNKTAR 117
Query: 125 PFVAAANIDDKRQ 137
PF A D Q
Sbjct: 118 PFGAPPPADSAPQ 130
>gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens]
Length = 278
Score = 95.1 bits (235), Expect = 7e-20
Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 37/246 (15%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDR----------GETHLWSPQVSEDGKAHPFKINLESEPQ 110
HA+AQ +I+ + L L++DR G++ L G + + S
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS 120
Query: 111 EFKPIGTAHNRRAQPF---------VAAANIDDKRQVVSASYNSP----IGLYSTSNIQD 157
+ + R PF A I Q ++ S P + +
Sbjct: 121 SYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSRQ 180
Query: 158 ALHGQL--RGLIPSSPQNEPTASVP------------PESDVYRMLHDNRNEPTQPRQSG 203
A G+ ++ P P +S P +S+V++ML +NR PRQS
Sbjct: 181 AGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAAPRQSS 240
Query: 204 SFRVLQ 209
SFR+LQ
Sbjct: 241 SFRLLQ 246
>gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens]
Length = 596
Score = 89.7 bits (221), Expect = 3e-18
Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 41/206 (19%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQE-FKPI------- 115
+AQ++IK L + + R S K P + + EP+E KP+
Sbjct: 65 EAQNKIKGCTGSLNMTLQR---------ASAAPKPEPVPVQ-KGEPKEVVKPVPITSPAV 114
Query: 116 -------GTAHNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIP 168
A+N+ +PF + ++ S SP ++ ++ + H
Sbjct: 115 SKVTSTNNMAYNKAPRPFGSVSS------PKVTSIPSPSSAFTPAHATTSSH-------- 160
Query: 169 SSPQNEPTASVPPESDVYRMLHDNRN 194
+SP P A+V P LH N N
Sbjct: 161 ASP--SPVAAVTPPLFAASGLHANAN 184
Score = 45.1 bits (105), Expect = 8e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCET 295
P C +C I+G V+ A + H CFVC C ++ + +GE YCET
Sbjct: 477 PECGRCQRKILGEVISALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCET 528
Score = 42.4 bits (98), Expect = 5e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 241 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
+R P+C C I G + A K HPE F CA C + G+ +G LYCE
Sbjct: 415 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCE 468
>gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens]
Length = 214
Score = 87.4 bits (215), Expect = 1e-17
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDR 82
+AQ++IK L + + R
Sbjct: 65 EAQNKIKGCTGSLNMTLQR 83
>gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens]
Length = 234
Score = 87.4 bits (215), Expect = 1e-17
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDR 82
+AQ++IK L + + R
Sbjct: 65 EAQNKIKGCTGSLNMTLQR 83
>gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens]
Length = 487
Score = 87.4 bits (215), Expect = 1e-17
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDR 82
+AQ++IK L + + R
Sbjct: 65 EAQNKIKGCTGSLNMTLQR 83
Score = 45.1 bits (105), Expect = 8e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 244 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCET 295
P C +C I+G V+ A + H CFVC C ++ + +GE YCET
Sbjct: 368 PECGRCQRKILGEVISALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCET 419
Score = 42.4 bits (98), Expect = 5e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 241 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 294
+R P+C C I G + A K HPE F CA C + G+ +G LYCE
Sbjct: 306 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCE 359
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 65.5 bits (158), Expect = 6e-11
Identities = 66/235 (28%), Positives = 95/235 (40%), Gaps = 32/235 (13%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V L G APWGFRL GG + +PL +++I S+A A L D +LAI+G +++HA
Sbjct: 9 VTLSGGAPWGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHAS 68
Query: 65 AQDRIKAAAHQLCLKIDR--GETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHNRR 122
A I A+ +QL L + R E + SP H ++ P +P G +
Sbjct: 69 AMSLIDASGNQLVLTVQRLADEGPVQSP------SPHELQVLSPLSPLSPEPPGAPVPQP 122
Query: 123 AQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQ----NEPTAS 178
QP + D + Y DA G P P+ PT
Sbjct: 123 LQPGSLRSPPDSE-------------AYYGETDSDA-DGPATQEKPRRPRRRGPTRPTPP 168
Query: 179 VPPESDVYRMLHDNRNEPTQ----PRQSGSFRVLQGMVDDGSDDRPAGTRSVRAP 229
P +VY L D+ EP P G RV +DG+ +P ++ P
Sbjct: 169 GAPPDEVY--LSDSPAEPAPTIPGPPSQGDSRVSSPSWEDGAALQPPPAEALLLP 221
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 58.9 bits (141), Expect = 6e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 58.9 bits (141), Expect = 6e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 58.9 bits (141), Expect = 6e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHA 63
V L G APWGF L GG + +PLVIT+I GSKAAA + L GD I+ I+ G
Sbjct: 29 VQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLAGDEIVGINDIGLSGF-RQ 87
Query: 64 DAQDRIKAAAHQLCLKIDRGETHLWSP 90
+A +K + L L + R W P
Sbjct: 88 EAICLVKGSHKTLKLVVKRRSELGWRP 114
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
>gi|194272200 actin binding LIM protein family, member 2 isoform 3
[Homo sapiens]
Length = 572
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 245 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 293
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 290
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 246 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 277
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 240 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 298
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 299 AR 300
A+
Sbjct: 206 AK 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,108,010
Number of Sequences: 37866
Number of extensions: 692893
Number of successful extensions: 2278
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 495
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.