Guide to the Human Genome
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Name: ABLIM2 Sequence: fasta or formatted (521aa) NCBI GI: 153792514
Description:

actin binding LIM protein family, member 2 isoform 6

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [645aa] actin binding LIM protein family, member 2 isoform 1
alt prot [611aa] actin binding LIM protein family, member 2 isoform 2
alt prot [572aa] actin binding LIM protein family, member 2 isoform 3
alt prot [559aa] actin binding LIM protein family, member 2 isoform 4
alt prot [531aa] actin binding LIM protein family, member 2 isoform 5
alt prot [470aa] actin binding LIM protein family, member 2 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         32           2
 C cysteine            5.6         29           1
 D aspartate           6.9         36           2
 E glutamate           5.4         28           2
 F phenylalanine       3.3         17           2
 G glycine             7.7         40           2
 H histidine           2.7         14           1
 I isoleucine          4.0         21           2
 K lysine              6.1         32           3
 L leucine             7.7         40           2
 M methionine          1.5          8           1
 N asparagine          1.9         10           1
 P proline             5.0         26           2
 Q glutamine           4.2         22           1
 R arginine            6.9         36           2
 S serine             11.1         58           2
 T threonine           4.2         22           1
 V valine              4.4         23           2
 W tryptophan          0.8          4           1
 Y tyrosine            4.4         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin binding LIM protein family, member 2 isoform ... 
ABLIM2                0.986   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.975   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.971   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.952   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.867   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.755   actin binding LIM protein family, member 2 isoform ...
ABLIM1                0.470   actin-binding LIM protein 1 isoform b 
ABLIM1                0.470   actin-binding LIM protein 1 isoform a 
ABLIM1                0.456   actin-binding LIM protein 1 isoform c 
ABLIM3                0.413   actin binding LIM protein family, member 3 
ABLIM1                0.111   actin-binding LIM protein 1 isoform s 
PXN                   0.107   paxillin isoform 3 
PXN                   0.107   paxillin isoform 2 
PXN                   0.107   paxillin isoform 1 
LPXN                  0.085   leupaxin isoform 1 
LPXN                  0.085   leupaxin isoform 2 
LIMS2                 0.081   LIM and senescent cell antigen-like domains 2 isofor...
LIMS2                 0.080   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.080   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.080   LIM and senescent cell antigen-like domains 2 isofo...
LIMS1                 0.079   LIM and senescent cell antigen-like domains 1 
TGFB1I1               0.078   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.078   transforming growth factor beta 1 induced transcript...
LIMK1                 0.070   LIM domain kinase 1 
FHL3                  0.068   four and a half LIM domains 3 
EPB49                 0.067   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.067   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.067   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.065   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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