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Search of human proteins with 166235176
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo
sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens] 756 0.0
gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens] 540 e-154
gi|13994151 PDZ and LIM domain 1 [Homo sapiens] 308 5e-84
gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens] 255 5e-68
gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens] 161 1e-39
gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens] 140 2e-33
gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens] 135 7e-32
gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens] 131 8e-31
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 131 8e-31
gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens] 114 1e-25
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 114 1e-25
gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens] 102 4e-22
gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens] 99 8e-21
gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens] 99 8e-21
gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens] 96 5e-20
gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens] 96 5e-20
gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens] 91 1e-18
gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens] 87 2e-17
gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens] 87 2e-17
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 65 1e-10
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 59 7e-09
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 59 7e-09
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 59 7e-09
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 56 4e-08
gi|194272207 actin binding LIM protein family, member 2 isoform ... 53 5e-07
gi|153792514 actin binding LIM protein family, member 2 isoform ... 53 5e-07
gi|194272204 actin binding LIM protein family, member 2 isoform ... 53 5e-07
gi|194272202 actin binding LIM protein family, member 2 isoform ... 53 5e-07
gi|194272200 actin binding LIM protein family, member 2 isoform ... 53 5e-07
gi|194272198 actin binding LIM protein family, member 2 isoform ... 53 5e-07
>gi|166235176 PDZ and LIM domain protein 3 isoform a [Homo sapiens]
Length = 364
Score = 756 bits (1951), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL
Sbjct: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
Query: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN 240
PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN
Sbjct: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN 240
Query: 241 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 300
RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
Sbjct: 241 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 300
Query: 301 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 360
IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
Sbjct: 301 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 360
Query: 361 YPKA 364
YPKA
Sbjct: 361 YPKA 364
>gi|166235178 PDZ and LIM domain protein 3 isoform b [Homo sapiens]
Length = 316
Score = 540 bits (1391), Expect = e-154
Identities = 275/364 (75%), Positives = 288/364 (79%), Gaps = 48/364 (13%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQ+ HN
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
R +PFV A NI + +
Sbjct: 121 RRAQPFVA------------------------------------------AANIDDKRQ- 137
Query: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN 240
+V A +N+P+ LYS NI + L GQ+ + +P +EPTASVPPESDVYRMLHDN
Sbjct: 138 ----VVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSP-QNEPTASVPPESDVYRMLHDN 192
Query: 241 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 300
RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
Sbjct: 193 RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG 252
Query: 301 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 360
IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
Sbjct: 253 IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL 312
Query: 361 YPKA 364
YPKA
Sbjct: 313 YPKA 316
>gi|13994151 PDZ and LIM domain 1 [Homo sapiens]
Length = 329
Score = 308 bits (789), Expect = 5e-84
Identities = 164/373 (43%), Positives = 219/373 (58%), Gaps = 59/373 (15%)
Query: 3 QTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTH 62
Q + L GP PWGFRL GG DF QPL I+R+TPGSKAA ANLC GDVI AIDG T +MTH
Sbjct: 4 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTH 63
Query: 63 ADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIR 122
+AQ+RIK L L + R E +WSP V+E+GK HP+K+NL SEPQ+ + HN
Sbjct: 64 LEAQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRS 123
Query: 123 PKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMELPG 182
PF ++P+S +T
Sbjct: 124 AMPFT--------------------ASPASSTT--------------------------- 136
Query: 183 VKIVHAQFNTPMQLYSDDNI------METLQGQVSTALGETPL-MSEPTAS--VPPESDV 233
+++ Q+N P LYS +NI +E+ PL ++P +S + ES+V
Sbjct: 137 ARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEANSRPLDHAQPPSSLVIDKESEV 196
Query: 234 YRMLHDNRNEPTQPRQSGSFRVLQGMVDD---GSDDRPAGTRSVRAPVTKVHGGSGGAQR 290
Y+ML + + P+QS SF VLQ +++ G ++P+G RSV+APVTKV G AQ+
Sbjct: 197 YKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQK 256
Query: 291 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTK 350
+P+CDKCG+GIVG VK RD++RHPEC+VC DC NLKQKG+FF+E ++YCE HAR R
Sbjct: 257 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVT 316
Query: 351 PPEGYDTVTLYPK 363
PPEGY+ VT++PK
Sbjct: 317 PPEGYEVVTVFPK 329
>gi|19923181 PDZ and LIM domain 4 isoform 1 [Homo sapiens]
Length = 330
Score = 255 bits (651), Expect = 5e-68
Identities = 152/377 (40%), Positives = 198/377 (52%), Gaps = 65/377 (17%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ+RIK L L + R E W P +D KA +I+++ E QDG+ +
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGSPTTSRR- 118
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
PSG G PS S P P+
Sbjct: 119 -----------------PSGTGTGPEDGRPSLGSPYGQ------------PPRFPVP--- 146
Query: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPE--------SD 232
+ + TL Q+ST P ++P +P S+
Sbjct: 147 -----------------HNGSSEATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSE 189
Query: 233 VYRMLHDNRNEPT--QPRQSGSFRVLQGMVDDGSDDR---PAGTRSVRAPVTKVHGGSGG 287
VYRML + EP +P+QSGSFR LQGM++ G P G R+++ +K+ G
Sbjct: 190 VYRMLREPA-EPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTASKLGAPLSG 248
Query: 288 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARA 347
Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+GYFF++ LYCE+HA+A
Sbjct: 249 LQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKA 308
Query: 348 RTKPPEGYDTVTLYPKA 364
R KPPEGYD V +YP A
Sbjct: 309 RVKPPEGYDVVAVYPNA 325
>gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens]
Length = 352
Score = 161 bits (407), Expect = 1e-39
Identities = 116/370 (31%), Positives = 184/370 (49%), Gaps = 43/370 (11%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSP-QVSEDGKAHPFKINLESEPQDGNYFEHKH 119
HA+AQ +I+ + L L++DR + SP Q + D + + Y E +
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQAT--SPGQTNGDSSLEVLATRFQGSVR--TYTESQS 116
Query: 120 NIRPKPFVIPGRSSGCSTPSGID--CGSGRSTPSSVSTVSTICPGDLKVAAKL-----AP 172
++R S S+P+ + GS S P S S+++ G+ ++ +P
Sbjct: 117 SLR----------SSYSSPTSLSPRAGSPFSPPPSSSSLT----GEAAISRSFQSLACSP 162
Query: 173 NIPLEMEL-----PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASV 227
+P L PG + + D+ + L + SE + +
Sbjct: 163 GLPAADRLSYSGRPGSRQAGLG-------RAGDSAVLVLPPSPGPRSSRPSMDSEGGSLL 215
Query: 228 PPE-SDVYRMLHDNRNEPTQPRQSGSFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGS 285
E S+V++ML +NR PRQS SFR+LQ ++ + PA S +P + +
Sbjct: 216 LDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASR 275
Query: 286 GGAQ--RMPLCDKCGSGIVGAVVKARD-KYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
A ++ C+KC + I V+ ++ +YRHP C+ CADC LNLK +G+F++ ELYCE
Sbjct: 276 ALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGDELYCE 335
Query: 343 THARARTKPP 352
HAR R P
Sbjct: 336 KHARQRYSAP 345
>gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens]
Length = 366
Score = 140 bits (353), Expect = 2e-33
Identities = 105/352 (29%), Positives = 173/352 (49%), Gaps = 43/352 (12%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSP-QVSEDGKAHPFKINLESEPQDGNYFEHKH 119
HA+AQ +I+ + L L++DR + SP Q + D + + Y E +
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQA--TSPGQTNGDSSLEVLATRFQGSVR--TYTESQS 116
Query: 120 NIRPKPFVIPGRSSGCSTPSGID--CGSGRSTPSSVSTVSTICPGDLKVAAKL-----AP 172
++R S S+P+ + GS S P S S+++ G+ ++ +P
Sbjct: 117 SLR----------SSYSSPTSLSPRAGSPFSPPPSSSSLT----GEAAISRSFQSLACSP 162
Query: 173 NIPLEMEL-----PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSE-PTAS 226
+P L PG + + D+ + L + SE +
Sbjct: 163 GLPAADRLSYSGRPGSRQAGLG-------RAGDSAVLVLPPSPGPRSSRPSMDSEGGSLL 215
Query: 227 VPPESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVD-DGSDDRPAGTRSVRAPVTKVHGGS 285
+ +S+V++ML +NR PRQS SFR+LQ ++ + PA S +P + +
Sbjct: 216 LDEDSEVFKMLQENREGRAAPRQSSSFRLLQEALEAEERGGTPAFLPSSLSPQSSLPASR 275
Query: 286 GGA--QRMPLCDKCGSGIVGAVVKARD-KYRHPECFVCADCNLNLKQKGYFF 334
A ++ C+KC + I V+ ++ +YRHP C+ CADC LNLK +G+F+
Sbjct: 276 ALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFW 327
>gi|196162711 PDZ and LIM domain 4 isoform 2 [Homo sapiens]
Length = 246
Score = 135 bits (339), Expect = 7e-32
Identities = 97/288 (33%), Positives = 130/288 (45%), Gaps = 62/288 (21%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ+RIK L L + R E W P +D KA +I+++ E QDG+
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSW-PSAPDDSKAQAHRIHIDPEIQDGS------- 112
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
+ PSG G PS S P P+
Sbjct: 113 -----------PTTSRRPSGTGTGPEDGRPSLGSPYGQ------------PPRFPVP--- 146
Query: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPE--------SD 232
+ + TL Q+ST P ++P +P S+
Sbjct: 147 -----------------HNGSSEATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSE 189
Query: 233 VYRMLHDNRNEP--TQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPV 278
VYRML + EP +P+QSGSFR LQGM++ G P+ + +
Sbjct: 190 VYRMLREPA-EPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTSSTI 236
>gi|122056619 LIM domain binding 3 isoform 4 [Homo sapiens]
Length = 283
Score = 131 bits (330), Expect = 8e-31
Identities = 94/275 (34%), Positives = 140/275 (50%), Gaps = 57/275 (20%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ++IK+A++ L L + + + P I+ + P
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSK--------------RPIPISTTAPPVQ--------- 97
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
P P VIP + ++P+ D R PS++ + L+ + P+E++
Sbjct: 98 -TPLP-VIPHQKVVVNSPANADY-QERFNPSALKD------------SALSTHKPIEVKG 142
Query: 181 PGVK--IVHAQFNTPMQLYSDDNIMETLQGQV----STALGETPLMSEPTASVPPESDVY 234
G K I+HAQ+NTP+ +YS D IM+ + GQ S G P+ +V S VY
Sbjct: 143 LGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKD---LAVDSASPVY 199
Query: 235 RMLHDNRNEP----------TQPRQSGSFRVLQGM 259
+ + ++N+P + QS SFR+L M
Sbjct: 200 QAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 131 bits (330), Expect = 8e-31
Identities = 94/275 (34%), Positives = 140/275 (50%), Gaps = 57/275 (20%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ++IK+A++ L L + + + P I+ + P
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSK--------------RPIPISTTAPPVQ--------- 97
Query: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
P P VIP + ++P+ D R PS++ + L+ + P+E++
Sbjct: 98 -TPLP-VIPHQKVVVNSPANADY-QERFNPSALKD------------SALSTHKPIEVKG 142
Query: 181 PGVK--IVHAQFNTPMQLYSDDNIMETLQGQV----STALGETPLMSEPTASVPPESDVY 234
G K I+HAQ+NTP+ +YS D IM+ + GQ S G P+ +V S VY
Sbjct: 143 LGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKD---LAVDSASPVY 199
Query: 235 RMLHDNRNEP----------TQPRQSGSFRVLQGM 259
+ + ++N+P + QS SFR+L M
Sbjct: 200 QAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 234
Score = 45.4 bits (106), Expect = 8e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
PLC KC + I+G V+ A + H CFVCA C + +GE YCE
Sbjct: 498 PLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE 548
Score = 40.0 bits (92), Expect = 0.003
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 288 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
+ R PLC C + I G + A + HPE F CA C +L + + +YCE
Sbjct: 435 SSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCE 489
Score = 32.0 bits (71), Expect = 0.89
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 314 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 345
H CF+CA C++NL+ + ++ + C+ HA
Sbjct: 581 HDTCFICAVCHVNLEGQPFYSKKDRPLCKKHA 612
>gi|122056617 LIM domain binding 3 isoform 3 [Homo sapiens]
Length = 330
Score = 114 bits (286), Expect = 1e-25
Identities = 89/285 (31%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ++IK+A++ L L + + + + +S + + +D +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPI---PISTTAPPVQTPLPVIPHQKDPALDTNGSL 117
Query: 121 IRPKPFVIPGRSSGCS-----TPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIP 175
+ P P S G P+ S S SS++ S P + AK +P
Sbjct: 118 VAPSPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGA 177
Query: 176 LEM----ELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVP--- 228
++ LPG Q+N P+ LYS + + E Q + G+ + P S+P
Sbjct: 178 RDLLGPKALPG-SSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGSLPIKD 236
Query: 229 ----PESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 259
S VY+ + ++N+P + QS SFR+L M
Sbjct: 237 LAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 281
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 114 bits (286), Expect = 1e-25
Identities = 89/285 (31%), Positives = 135/285 (47%), Gaps = 30/285 (10%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M +V L GP PWGFRL GG DFN PL I+RITPGSKAA + L GD+++AIDG T++M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
TH +AQ++IK+A++ L L + + + + +S + + +D +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPI---PISTTAPPVQTPLPVIPHQKDPALDTNGSL 117
Query: 121 IRPKPFVIPGRSSGCS-----TPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIP 175
+ P P S G P+ S S SS++ S P + AK +P
Sbjct: 118 VAPSPSPEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTSPEGA 177
Query: 176 LEM----ELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVP--- 228
++ LPG Q+N P+ LYS + + E Q + G+ + P S+P
Sbjct: 178 RDLLGPKALPG-SSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGVGLPGGSLPIKD 236
Query: 229 ----PESDVYRMLHDNRNEP----------TQPRQSGSFRVLQGM 259
S VY+ + ++N+P + QS SFR+L M
Sbjct: 237 LAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQM 281
Score = 45.4 bits (106), Expect = 8e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
PLC KC + I+G V+ A + H CFVCA C + +GE YCE
Sbjct: 608 PLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE 658
Score = 40.0 bits (92), Expect = 0.003
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 288 AQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
+ R PLC C + I G + A + HPE F CA C +L + + +YCE
Sbjct: 545 SSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCE 599
Score = 32.0 bits (71), Expect = 0.89
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 314 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 345
H CF+CA C++NL+ + ++ + C+ HA
Sbjct: 691 HDTCFICAVCHVNLEGQPFYSKKDRPLCKKHA 722
>gi|197383100 PDZ and LIM domain 5 isoform b [Homo sapiens]
Length = 487
Score = 102 bits (255), Expect = 4e-22
Identities = 98/362 (27%), Positives = 146/362 (40%), Gaps = 30/362 (8%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQD--------GNYF 115
+AQ++IK L + + R +P+ P ++ SE G+
Sbjct: 65 EAQNKIKGCTGSLNMTLQRASA---APKPEPVPVQKPTVTSVCSETSQELAEGQRRGSQG 121
Query: 116 EHK-HNIRPKPFVIPGRSSGCSTPSGIDCGSGR---STPSSVSTVSTICPGDLKVAAKLA 171
+ K N P+ ++ + P+ D R T T ++ A++
Sbjct: 122 DSKQQNGPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQIT 181
Query: 172 PNIPL-EMELPGVKIVHAQFNTPMQLYSD----DNIMETLQGQVSTALGETPLMSEPTAS 226
L E E K + QL S ++ E+L S G T L +
Sbjct: 182 GTEHLKESEADNTKKANNSQEPSPQLASSVASTRSMPESLDSPTSGRPGVTSLTAAAAFK 241
Query: 227 VPPESDVYR---MLHDNRNEPTQPRQSGSFRVLQGMVDDGS---DDRPAGTRSVRAPVTK 280
+ V + N+ P+ R S S + S +P+ ++
Sbjct: 242 PVGSTGVIKSPSWQRPNQGVPSTGRISNSATYSGSVAPANSALGQTQPSDQDTLVQRAEH 301
Query: 281 VHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELY 340
+ G +R P+C C I G + A K HPE F CA C + G+ +G LY
Sbjct: 302 IPAG----KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALY 357
Query: 341 CE 342
CE
Sbjct: 358 CE 359
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCET 343
P C +C I+G V+ A + H CFVC C ++ + +GE YCET
Sbjct: 368 PECGRCQRKILGEVISALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCET 419
>gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens]
Length = 278
Score = 98.6 bits (244), Expect = 8e-21
Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 39/271 (14%)
Query: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
M TV + GPAPWGFR++GG DF+ P+++T++ KA A+L PGD+I+AI+G E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSP-QVSEDGKAHPFKINLESEPQDGNYFEHKH 119
HA+AQ +I+ + L L++DR + SP Q + D + + Y E +
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQA--TSPGQTNGDSSLEVLATRFQGSVR--TYTESQS 116
Query: 120 NIRPKPFVIPGRSSGCSTPSGID--CGSGRSTPSSVSTVSTICPGDLKVAAKL-----AP 172
++R S S+P+ + GS S P S S+++ G+ ++ +P
Sbjct: 117 SLR----------SSYSSPTSLSPRAGSPFSPPPSSSSLT----GEAAISRSFQSLACSP 162
Query: 173 NIPLEMEL-----PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSE-PTAS 226
+P L PG + + D+ + L + SE +
Sbjct: 163 GLPAADRLSYSGRPGSRQAGLG-------RAGDSAVLVLPPSPGPRSSRPSMDSEGGSLL 215
Query: 227 VPPESDVYRMLHDNRNEPTQPRQSGSFRVLQ 257
+ +S+V++ML +NR PRQS SFR+LQ
Sbjct: 216 LDEDSEVFKMLQENREGRAAPRQSSSFRLLQ 246
>gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens]
Length = 423
Score = 98.6 bits (244), Expect = 8e-21
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIRPK 124
AQ++I+A +L L + R + PQ + P + L + E+ + RP+
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLR-PLVPDASKQRLMENTEDWRPR 124
Query: 125 PFVIPGRS 132
P RS
Sbjct: 125 PGTGQSRS 132
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 271 TRSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 330
T V+A V GG + P+C +C I G + A HPE FVC+ C L++
Sbjct: 225 TSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEG 284
Query: 331 GYFFIEGELYC 341
G+F +G ++C
Sbjct: 285 GFFEEKGAIFC 295
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
P C KC I G ++ A H CF CA C ++ + ++ EG YCE
Sbjct: 305 PSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCE 355
Score = 34.7 bits (78), Expect = 0.14
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 314 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 345
H CFVCA C +NL+ K ++ + C++HA
Sbjct: 388 HDTCFVCAICQINLEGKTFYSKKDRPLCKSHA 419
>gi|47157328 PDZ and LIM domain 7 isoform 4 [Homo sapiens]
Length = 222
Score = 95.9 bits (237), Expect = 5e-20
Identities = 47/96 (48%), Positives = 62/96 (64%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHP 100
AQ++I+A +L L + R + PQ + A P
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADP 101
>gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens]
Length = 457
Score = 95.9 bits (237), Expect = 5e-20
Identities = 47/96 (48%), Positives = 62/96 (64%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V+L GPAPWGFRL GG DFN PL I+R+TPG KAA A + GD +L+IDG S+TH +
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHP 100
AQ++I+A +L L + R + PQ + A P
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADP 101
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 271 TRSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 330
T V+A V GG + P+C +C I G + A HPE FVC+ C L++
Sbjct: 259 TSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEG 318
Query: 331 GYFFIEGELYC 341
G+F +G ++C
Sbjct: 319 GFFEEKGAIFC 329
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
P C KC I G ++ A H CF CA C ++ + ++ EG YCE
Sbjct: 339 PSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCE 389
Score = 34.7 bits (78), Expect = 0.14
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 314 HPECFVCADCNLNLKQKGYFFIEGELYCETHA 345
H CFVCA C +NL+ K ++ + C++HA
Sbjct: 422 HDTCFVCAICQINLEGKTFYSKKDRPLCKSHA 453
>gi|197383077 PDZ and LIM domain 5 isoform a [Homo sapiens]
Length = 596
Score = 91.3 bits (225), Expect = 1e-18
Identities = 84/288 (29%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDRGE-THLWSPQVSEDGK----AHPFKINLESEPQDGNYFEHK 118
+AQ++IK L + + R P + G+ P I + + +
Sbjct: 65 EAQNKIKGCTGSLNMTLQRASAAPKPEPVPVQKGEPKEVVKPVPITSPAVSKVTSTNNMA 124
Query: 119 HNIRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAP------ 172
+N P+PF S PS S TP+ +T S P VAA P
Sbjct: 125 YNKAPRPFGSVSSPKVTSIPS----PSSAFTPAHATTSSHASPS--PVAAVTPPLFAASG 178
Query: 173 -----NIPLEMELPGVKIVHAQFNTPMQ----LYSDDNIMETLQGQVSTALGETPLMSEP 223
N+ + + N P Q + E +GQ + G++ + P
Sbjct: 179 LHANANLSADQSPSALSAGKTAVNVPRQPTVTSVCSETSQELAEGQRRGSQGDSKQQNGP 238
Query: 224 TAS-----------VPPESDVYRMLHDNRNEPTQPR----QSGSFRVL 256
VP SD + E +PR QS SFR+L
Sbjct: 239 PRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRIL 286
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 292 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCET 343
P C +C I+G V+ A + H CFVC C ++ + +GE YCET
Sbjct: 477 PECGRCQRKILGEVISALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCET 528
Score = 42.4 bits (98), Expect = 7e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 289 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCE 342
+R P+C C I G + A K HPE F CA C + G+ +G LYCE
Sbjct: 415 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCE 468
>gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens]
Length = 214
Score = 87.4 bits (215), Expect = 2e-17
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDR 82
+AQ++IK L + + R
Sbjct: 65 EAQNKIKGCTGSLNMTLQR 83
>gi|58533159 PDZ and LIM domain 5 isoform d [Homo sapiens]
Length = 234
Score = 87.4 bits (215), Expect = 2e-17
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 4 TVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 63
+V L GPAPWGFRL GG DFN PL I+ + G KAA AN+ GDV+L+IDG + MTH
Sbjct: 5 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHL 64
Query: 64 DAQDRIKAAAHQLCLKIDR 82
+AQ++IK L + + R
Sbjct: 65 EAQNKIKGCTGSLNMTLQR 83
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
V L G APWGFRL GG + +PL +++I S+A A L D +LAI+G +++HA
Sbjct: 9 VTLSGGAPWGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHAS 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIRPK 124
A I A+ +QL L + R ++++G P + + P+
Sbjct: 69 AMSLIDASGNQLVLTVQR---------LADEGPVQ------SPSPHELQVLSPLSPLSPE 113
Query: 125 PFVIPGRSSGCSTPSGIDCGSGRSTPSS 152
P G P + GS RS P S
Sbjct: 114 P-------PGAPVPQPLQPGSLRSPPDS 134
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 64
+ + G APWGFRL GG + QPL + +I SKA+ + LC GD +++I+G +T+ +
Sbjct: 9 ISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 65 AQDRIKAAAHQLCLKIDRGETHLWSPQVSED 95
+++ L + I R + + +SE+
Sbjct: 69 VIKLMESITDSLQMLIKRPSSGISEALISEN 99
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 5 VILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHA 63
V L G APWGF L GG + +PLVIT+I GSKAAA + L GD I+ I+ G
Sbjct: 29 VQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLAGDEIVGINDIGLSGF-RQ 87
Query: 64 DAQDRIKAAAHQLCLKIDRGETHLWSP 90
+A +K + L L + R W P
Sbjct: 88 EAICLVKGSHKTLKLVVKRRSELGWRP 114
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
>gi|194272200 actin binding LIM protein family, member 2 isoform 3
[Homo sapiens]
Length = 572
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 52.8 bits (125), Expect = 5e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 293 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYC 341
LC+ CG+ G V++ +DKY H +CFVC C +L + G+F +GE C
Sbjct: 23 LCNTCGNVCKGEVLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYIC 71
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGE 338
CD C I G V++A +K+ HP C +C C G F EGE
Sbjct: 212 CDSCEKYITGRVLEAGEKHYHPSCALCVRC-------GQMFAEGE 249
Score = 38.1 bits (87), Expect = 0.012
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 294 CDKCGSGIVGAVVKARDKYRHPECFVCADCNL 325
C C I G VV A K HP+CFVCA C L
Sbjct: 83 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRL 114
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 288 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHAR 346
+Q + C CG+ I G + A DK+ H CF C C L Y +G YCE
Sbjct: 147 SQGLRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCG-KLLNAEYISKDGLPYCEADYH 205
Query: 347 AR 348
A+
Sbjct: 206 AK 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,748,680
Number of Sequences: 37866
Number of extensions: 847178
Number of successful extensions: 2688
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 515
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.