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Search of human proteins with 165932383
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|165932383 hypothetical protein LOC388341 isoform 2 [Homo
sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|165932383 hypothetical protein LOC388341 isoform 2 [Homo sapi... 451 e-127
gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo sapi... 255 2e-68
gi|134288867 hypothetical protein LOC388886 [Homo sapiens] 91 7e-19
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 46 3e-05
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 46 3e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 43 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 43 2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 39 0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 39 0.003
gi|48762934 alpha 2 type I collagen [Homo sapiens] 38 0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.006
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.006
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 38 0.007
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 38 0.007
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 38 0.007
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 38 0.007
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 38 0.007
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.009
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.009
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.009
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 37 0.009
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 37 0.012
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 37 0.016
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.021
gi|61699226 pulmonary surfactant-associated protein D precursor ... 36 0.021
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.028
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.028
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.028
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 35 0.036
>gi|165932383 hypothetical protein LOC388341 isoform 2 [Homo
sapiens]
Length = 212
Score = 451 bits (1160), Expect = e-127
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE 60
MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE
Sbjct: 1 MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE 60
Query: 61 LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI 120
LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI
Sbjct: 61 LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI 120
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG 180
HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG
Sbjct: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG 180
Query: 181 PAAAASTQHPAPPHHTGTQWQPVDPGRAARPH 212
PAAAASTQHPAPPHHTGTQWQPVDPGRAARPH
Sbjct: 181 PAAAASTQHPAPPHHTGTQWQPVDPGRAARPH 212
>gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo
sapiens]
Length = 344
Score = 255 bits (652), Expect = 2e-68
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE 60
MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE
Sbjct: 1 MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQE 60
Query: 61 LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI 120
LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI
Sbjct: 61 LLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYI 120
Query: 121 HCPKP 125
HCPKP
Sbjct: 121 HCPKP 125
>gi|134288867 hypothetical protein LOC388886 [Homo sapiens]
Length = 315
Score = 90.9 bits (224), Expect = 7e-19
Identities = 50/99 (50%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 31 ASLLLRAGDKAGR-----AGAGMPPYHRRVGMVQELLRMVRQGRREEAGTLLQHLRQDLG 85
A L RAG +AG AG G PY RRV ++E+ +R+ R E A LL+ LRQDLG
Sbjct: 3 ARLGRRAGPEAGSEAGAAAGCGPAPYERRVRWLREIQSTLRERRPERARQLLRLLRQDLG 62
Query: 86 MESTSLDDVLYRYASFRNLVDPITHDLIISLARYIHCPK 124
+E T L D+LYR +F N VDPI+HDL+++LAR + CPK
Sbjct: 63 LERTLLPDILYRDVAFLNPVDPISHDLLVNLARDLQCPK 101
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 45.8 bits (107), Expect = 3e-05
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P P G PG R GP G P PG G L G +RG G P G GP
Sbjct: 1779 PPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGP 1838
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGR 207
PP TG++ P PGR
Sbjct: 1839 PGPQGESRTGPPGSTGSRGPPGPPGR 1864
Score = 36.2 bits (82), Expect = 0.021
Identities = 31/92 (33%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 123 PKPPQGCPGRKPPRQH---SGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRH 179
P P G PG K PR SG +G P PR G P G G + GR
Sbjct: 1587 PPGPAGGPGAKGPRGERGISGAIGPPG--PRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQ 1644
Query: 180 GPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A P P TGT P PG P
Sbjct: 1645 GMKGDAG--EPGLPGRTGTPGLPGPPGPMGPP 1674
Score = 28.1 bits (61), Expect = 5.7
Identities = 31/105 (29%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 123 PKPPQGCPGRKPPRQHS-----GPVGNPTDLPRPGAGDQL-------PTALWGAGRQRGA 170
P PQG PG + P S G G D PG + P G RG
Sbjct: 1620 PPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGF 1679
Query: 171 ----GLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G P G GP + P P TG +P PG RP
Sbjct: 1680 TGKDGAMGPRGPPGPPGS-----PGSPGVTGPSGKPGKPGDHGRP 1719
Score = 27.3 bits (59), Expect = 9.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG 169
P P G PG SG G P D RPG P+ L G RG
Sbjct: 1691 PPGPPGSPGSPGVTGPSGKPGKPGDHGRPG-----PSGLKGEKGDRG 1732
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 45.8 bits (107), Expect = 3e-05
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P P G PG R GP G P PG G L G +RG G P G GP
Sbjct: 2943 PPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGP 3002
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGR 207
PP TG++ P PGR
Sbjct: 3003 PGPQGESRTGPPGSTGSRGPPGPPGR 3028
Score = 36.2 bits (82), Expect = 0.021
Identities = 31/92 (33%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 123 PKPPQGCPGRKPPRQH---SGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRH 179
P P G PG K PR SG +G P PR G P G G + GR
Sbjct: 2751 PPGPAGGPGAKGPRGERGISGAIGPPG--PRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQ 2808
Query: 180 GPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A P P TGT P PG P
Sbjct: 2809 GMKGDAG--EPGLPGRTGTPGLPGPPGPMGPP 2838
Score = 28.1 bits (61), Expect = 5.7
Identities = 31/105 (29%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 123 PKPPQGCPGRKPPRQHS-----GPVGNPTDLPRPGAGDQL-------PTALWGAGRQRGA 170
P PQG PG + P S G G D PG + P G RG
Sbjct: 2784 PPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGF 2843
Query: 171 ----GLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G P G GP + P P TG +P PG RP
Sbjct: 2844 TGKDGAMGPRGPPGPPGS-----PGSPGVTGPSGKPGKPGDHGRP 2883
Score = 27.3 bits (59), Expect = 9.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG 169
P P G PG SG G P D RPG P+ L G RG
Sbjct: 2855 PPGPPGSPGSPGVTGPSGKPGKPGDHGRPG-----PSGLKGEKGDRG 2896
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P+G PG + P +GP G D RPG LP A GR AG P G+ GP+ A
Sbjct: 526 PKGAPGERGPSGLAGPKGANGDPGRPGE-PGLPGARGLTGRPGDAG---PQGKVGPSGAP 581
Query: 186 STQ-HPAPPHHTGTQWQP 202
P PP G + QP
Sbjct: 582 GEDGRPGPPGPQGARGQP 599
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRG-AGLHRPHGRHG 180
P G G K R +G VG P PG+ G PT G RG AG P G G
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG---DRGEAGAQGPMGPSG 1101
Query: 181 PAAAASTQHPAPPHHTGTQWQPVDPG 206
PA A Q P P G + + +PG
Sbjct: 1102 PAGARGIQGPQGPR--GDKGEAGEPG 1125
Score = 32.7 bits (73), Expect = 0.23
Identities = 31/119 (26%), Positives = 41/119 (34%), Gaps = 24/119 (20%)
Query: 117 ARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWG--------- 163
A+ + P+ G PG P+ SGP G P PG G++ + G
Sbjct: 712 AQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG 771
Query: 164 -------AGRQRGAGLHRPHGRHGPAAA----ASTQHPAPPHHTGTQWQPVDPGRAARP 211
G+ G GL P G GPA A P P G + P + G P
Sbjct: 772 EKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Score = 32.7 bits (73), Expect = 0.23
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
K P+G PG+ R +GP+G P G G+ P G+ RGA R G GP
Sbjct: 773 KGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER--GETGPP 830
Query: 183 AAASTQHP----APPHHTGTQWQPVDPGRAARP 211
A P P G Q + G A P
Sbjct: 831 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP 863
Score = 31.2 bits (69), Expect = 0.68
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P G G + GP G P + P G P A G G P G GP
Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVG-PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 186 STQHPAPPHHTGTQWQPVDPG 206
T P P G P G
Sbjct: 396 GT--PGSPGPAGASGNPGTDG 414
Score = 31.2 bits (69), Expect = 0.68
Identities = 30/105 (28%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRG-------------A 170
G PGR GP G P + PG +G + P G QRG
Sbjct: 936 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 995
Query: 171 GLHRPHGRHG----PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
GL P G G P A+ P P G +PGR P
Sbjct: 996 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP 1040
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ P G PG + P +GP G PGA P A AGR G + G GP
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGA-TGFPGA---AGRVGPPGSNGNPGPPGPP 920
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+ P G + PGRA P
Sbjct: 921 GPSGKDGP-----KGARGDSGPPGRAGEP 944
Score = 30.4 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWG------AGRQRGA-----GLHR 174
P+G G + GP G P PG G + G G Q G G
Sbjct: 148 PRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 207
Query: 175 PHGRHGPAAAASTQHPAPPHHTGTQWQPVDPG 206
P G GPA A P P G +P +PG
Sbjct: 208 PRGPPGPAGA-----PGPQGFQGNPGEPGEPG 234
Score = 30.0 bits (66), Expect = 1.5
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 127 QGCPGRKPPRQHSGPVGNP--TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG---- 180
QG PG R GPVG P T + P A GR AG+ G G
Sbjct: 1007 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGA 1066
Query: 181 PAAAASTQHPAPPHHTGTQ 199
P A P P TG Q
Sbjct: 1067 PGAPGPPGSPGPAGPTGKQ 1085
Score = 29.6 bits (65), Expect = 2.0
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G G P SGP G P G P +G+ G+ P G GP
Sbjct: 1144 PPGPSGDQGASGPAGPSGPRGPP--------GPVGP-----SGKDGANGIPGPIGPPGPR 1190
Query: 183 AAASTQHPA-PPHHTGTQWQPVDPG 206
+ PA PP + G P PG
Sbjct: 1191 GRSGETGPAGPPGNPGPPGPPGPPG 1215
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P+G PG + P +GP G D RPG LP A GR AG P G+ GP+ A
Sbjct: 457 PKGAPGERGPSGLAGPKGANGDPGRPGE-PGLPGARGLTGRPGDAG---PQGKVGPSGAP 512
Query: 186 STQ-HPAPPHHTGTQWQP 202
P PP G + QP
Sbjct: 513 GEDGRPGPPGPQGARGQP 530
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRG-AGLHRPHGRHG 180
P G G K R +G VG P PG+ G PT G RG AG P G G
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG---DRGEAGAQGPMGPSG 1032
Query: 181 PAAAASTQHPAPPHHTGTQWQPVDPG 206
PA A Q P P G + + +PG
Sbjct: 1033 PAGARGIQGPQGPR--GDKGEAGEPG 1056
Score = 32.7 bits (73), Expect = 0.23
Identities = 31/119 (26%), Positives = 41/119 (34%), Gaps = 24/119 (20%)
Query: 117 ARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWG--------- 163
A+ + P+ G PG P+ SGP G P PG G++ + G
Sbjct: 643 AQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG 702
Query: 164 -------AGRQRGAGLHRPHGRHGPAAA----ASTQHPAPPHHTGTQWQPVDPGRAARP 211
G+ G GL P G GPA A P P G + P + G P
Sbjct: 703 EKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Score = 32.7 bits (73), Expect = 0.23
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
K P+G PG+ R +GP+G P G G+ P G+ RGA R G GP
Sbjct: 704 KGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER--GETGPP 761
Query: 183 AAASTQHP----APPHHTGTQWQPVDPGRAARP 211
A P P G Q + G A P
Sbjct: 762 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP 794
Score = 31.2 bits (69), Expect = 0.68
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P G G + GP G P + P G P A G G P G GP
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVG-PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 186 STQHPAPPHHTGTQWQPVDPG 206
T P P G P G
Sbjct: 327 GT--PGSPGPAGASGNPGTDG 345
Score = 31.2 bits (69), Expect = 0.68
Identities = 30/105 (28%), Positives = 35/105 (33%), Gaps = 21/105 (20%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRG-------------A 170
G PGR GP G P + PG +G + P G QRG
Sbjct: 867 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 926
Query: 171 GLHRPHGRHG----PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
GL P G G P A+ P P G +PGR P
Sbjct: 927 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP 971
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ P G PG + P +GP G PGA P A AGR G + G GP
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGA-TGFPGA---AGRVGPPGSNGNPGPPGPP 851
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+ P G + PGRA P
Sbjct: 852 GPSGKDGP-----KGARGDSGPPGRAGEP 875
Score = 30.4 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWG------AGRQRGA-----GLHR 174
P+G G + GP G P PG G + G G Q G G
Sbjct: 79 PRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 138
Query: 175 PHGRHGPAAAASTQHPAPPHHTGTQWQPVDPG 206
P G GPA A P P G +P +PG
Sbjct: 139 PRGPPGPAGA-----PGPQGFQGNPGEPGEPG 165
Score = 30.0 bits (66), Expect = 1.5
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 127 QGCPGRKPPRQHSGPVGNP--TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG---- 180
QG PG R GPVG P T + P A GR AG+ G G
Sbjct: 938 QGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGA 997
Query: 181 PAAAASTQHPAPPHHTGTQ 199
P A P P TG Q
Sbjct: 998 PGAPGPPGSPGPAGPTGKQ 1016
Score = 29.6 bits (65), Expect = 2.0
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G G P SGP G P G P +G+ G+ P G GP
Sbjct: 1075 PPGPSGDQGASGPAGPSGPRGPP--------GPVGP-----SGKDGANGIPGPIGPPGPR 1121
Query: 183 AAASTQHPA-PPHHTGTQWQPVDPG 206
+ PA PP + G P PG
Sbjct: 1122 GRSGETGPAGPPGNPGPPGPPGPPG 1146
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 40.4 bits (93), Expect = 0.001
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P+G G + P SGP G+ D RPG P G G+ P G+ GP A
Sbjct: 538 PKGAQGERGPVGSSGPKGSQGDPGRPGE----PGLPGARGLTGNPGVQGPEGKLGPLGAP 593
Query: 186 STQ-HPAPPHHTGTQWQPVDPG 206
P PP G + QP G
Sbjct: 594 GEDGRPGPPGSIGIRGQPGSMG 615
Score = 33.9 bits (76), Expect = 0.10
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P G G + P+ G G P + PG LP A+ G G G GP +A
Sbjct: 391 PTGARGPEGPQGQRGETGPPGPVGSPG----LPGAIGTDGTPGAKGPTGSPGTSGPPGSA 446
Query: 186 STQ-HPAPPHHTGTQ---WQPVDPG 206
P P TG Q QP DPG
Sbjct: 447 GPPGSPGPQGSTGPQGIRGQPGDPG 471
Score = 31.6 bits (70), Expect = 0.52
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGA-GRQRGAGLHRPHGRHGPAAAA 185
G PG K R H G G ++ PG+ G+ PT GA G G+ GR GP A
Sbjct: 294 GLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGA- 352
Query: 186 STQHPAPPHHTGTQWQPVDPG 206
P G P PG
Sbjct: 353 -------PGQRGAHGMPGKPG 366
Score = 31.2 bits (69), Expect = 0.68
Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQ-------LPTALWGAGRQRGAGLHRPH 176
K P G PG P +GP G+P P+ G Q P G G PH
Sbjct: 431 KGPTGSPGTSGPPGSAGPPGSPG--PQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPH 488
Query: 177 GRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G GP PP G + DPG P
Sbjct: 489 GIQGPI--------GPPGEEGKRGPRGDPGTVGPP 515
Score = 31.2 bits (69), Expect = 0.68
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGA-------GDQLPTALWGA-GRQRGAGLHRPHG 177
P G PG+ P +G G P + PG+ G + P G GR G G
Sbjct: 1012 PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRG 1071
Query: 178 RHGPAAAASTQ----HPAPPHHTGTQWQPVDPG 206
GPA +Q P P G Q DPG
Sbjct: 1072 DPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPG 1104
Score = 29.6 bits (65), Expect = 2.0
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDL-PRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
PK G PG K +GP+G L PR G++ GA QRGA H G+ GP
Sbjct: 310 PKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGA--HGMPGKPGP 367
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/113 (27%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 120 IHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA--------GDQLPTALWGAGRQRGAG 171
I P P G G++ PR G VG P + GA D LP G + G
Sbjct: 490 IQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVG 549
Query: 172 LHRPHGRHG----------PAAAASTQHP---APPHHTGTQWQPVDPGRAARP 211
P G G P A T +P P G P + GR P
Sbjct: 550 SSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPP 602
Score = 29.6 bits (65), Expect = 2.0
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 123 PKPPQ--GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA----GLHRPH 176
P PP G G+ GP G+ D +PG G QRGA G P
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNA-----GVPGQRGAPGKDGEVGPS 653
Query: 177 GRHGPAAAASTQ-HPAPPHHTGTQWQPVDPG 206
G GP A + PP TG Q P PG
Sbjct: 654 GPVGPPGLAGERGEQGPPGPTGFQGLPGPPG 684
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG-PAAAAS 186
G PG P G GNP + PG T L G + AG H P G G P + +
Sbjct: 699 GDPGAVGPLGPRGERGNPGERGEPGI-----TGL--PGEKGMAGGHGPDGPKGSPGPSGT 751
Query: 187 TQHPAPPHHTGTQWQPVDPGRAARP 211
PP G Q P + G A P
Sbjct: 752 PGDTGPP---GLQGMPGERGIAGTP 773
Score = 28.1 bits (61), Expect = 5.7
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-------------GDQLPTALWGAGRQRG 169
P+ +G GR PR G G P +PGA G P + AG
Sbjct: 142 PRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEK 201
Query: 170 AGLHR----------PHGRHGPAAAASTQHPAPPHHTGTQWQPVDPG 206
+GL P G GP Q A P TG +P DPG
Sbjct: 202 SGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGP--TGPPGEPGDPG 246
Score = 28.1 bits (61), Expect = 5.7
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 123 PKPPQGCPGRKPPRQHSGP---VGNPTDLPRPG----AGDQLPTALWG-AGRQRGAGLHR 174
P P G PG K R GP G P R G AG P G G++ GL
Sbjct: 886 PHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRG 945
Query: 175 PHGRHGPAAAASTQHPA-PPHHTGTQWQPVDPGR 207
G HG + PA PP G + P + G+
Sbjct: 946 DPGSHG---RVGDRGPAGPPGGPGDKGDPGEDGQ 976
Score = 27.3 bits (59), Expect = 9.8
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRG-AGLHRPHGRHG-- 180
G GR R +GP G P D PG G P G QRG G+ G G
Sbjct: 948 GSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMP 1007
Query: 181 --PAAAASTQHPAPPHHTGTQWQP 202
P A + P TG + P
Sbjct: 1008 GLPGPAGTPGKVGPTGATGDKGPP 1031
Score = 27.3 bits (59), Expect = 9.8
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAAS 186
G PG PR GPVG PG G P + G+ + AG P G GP
Sbjct: 1167 GIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGE--AGPEGPPGEPGPPGP-- 1222
Query: 187 TQHPAPPHH 195
P PP H
Sbjct: 1223 ---PGPPGH 1228
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGR---QRGAGLHRPHGRH 179
P PP P PP QH+ P G+ L P L L GR R A RP+
Sbjct: 142 PPPPPQPPPSPPPAQHAEPDGDEVLLRIPAFSRDLYLLLRRDGRFLAPRFAVEQRPNPGP 201
Query: 180 GPAAAAST-QHPAPP 193
GP AAS Q PAPP
Sbjct: 202 GPTGAASAPQPPAPP 216
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.9 bits (89), Expect = 0.003
Identities = 61/237 (25%), Positives = 84/237 (35%), Gaps = 31/237 (13%)
Query: 2 GTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQEL 61
G + +G + +R PG A GP+ ++ + L GDK +G+ G EL
Sbjct: 418 GPQGLRGDVGDRG-PGGAAGPKGDQGIAGSDGL--PGDKGELGPSGLVGPKGESGSRGEL 474
Query: 62 LRMVRQGRREEAGTL-LQHLRQDLGMES-------TSLDDVLYRYAS---FRNLVDPITH 110
QG +G + LG++ T V + AS R L +
Sbjct: 475 GPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMIS 534
Query: 111 DLIISLARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA----GDQLPTALWGAGR 166
+ I LA ++ P P G GR P GP G P + PGA G + PT G
Sbjct: 535 EQIAQLAAHLRKPLAP-GSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPG 593
Query: 167 QRG------------AGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
RG AGL P G GP + G +P PG P
Sbjct: 594 PRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLP 650
Score = 30.4 bits (67), Expect = 1.2
Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPG-------AGDQLPTALWGAGRQRGAGLHRPHGR 178
P G PG P+ G G P + PG G P GA +RG+ G
Sbjct: 54 PPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGS-----LGP 108
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
GP P PP G P G P
Sbjct: 109 PGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPP 141
Score = 29.3 bits (64), Expect = 2.6
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 35/123 (28%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRP-------------GA---------------- 153
P+ P G PG + + G +G+P LP P GA
Sbjct: 392 PQGPPGAPGVRGFQGQKGSMGDP-GLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLP 450
Query: 154 ---GDQLPTALWGAGRQRGA-GLHRPHGRHGPAAAASTQH-PAPPHHTGTQWQPVDPGRA 208
G+ P+ L G + G+ G P G GP + Q P PP G Q P PG
Sbjct: 451 GDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGIT 510
Query: 209 ARP 211
+P
Sbjct: 511 GKP 513
Score = 27.7 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPT 159
P P G PG P GP G+P LP Q P+
Sbjct: 140 PPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPS 176
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 38.1 bits (87), Expect = 0.006
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P G PGR +GP G P PG G G G G G G GP AA
Sbjct: 46 PPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAA 105
Query: 186 STQHPAPPHHTGTQWQPVDPGR 207
P P G +P +PG+
Sbjct: 106 GA--PGPQGFQGPAGEPGEPGQ 125
Score = 32.3 bits (72), Expect = 0.30
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 128 GCPGRKPPRQHSGPVGNPTDL-PRPGAGDQLPTALWG-AGRQRGAGLHRPHGRHGPAAAA 185
G PGR H G G P ++ P AG P G AG+ G P G GPA A
Sbjct: 934 GPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAV 993
Query: 186 STQHPAPPHH-TGTQWQPVDPGRAARP 211
+ P+ P G + +P + G P
Sbjct: 994 GPRGPSGPQGIRGDKGEPGEKGPRGLP 1020
Score = 32.0 bits (71), Expect = 0.40
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGP 181
P P G G PR SGP G D P G++ P L G G GL G HG
Sbjct: 983 PSGPVGPAGAVGPRGPSGPQGIRGDKGEP--GEKGPRGLPGLKGHNGLQGLPGIAGHHGD 1040
Query: 182 AAAASTQHPAPP 193
A + PA P
Sbjct: 1041 QGAPGSVGPAGP 1052
Score = 31.6 bits (70), Expect = 0.52
Identities = 33/110 (30%), Positives = 36/110 (32%), Gaps = 21/110 (19%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----------------AGDQLPTALWGAGR 166
P+ G PG P GPVG P RPG G + PT G
Sbjct: 449 PRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNG 508
Query: 167 QRG-AGLHRPHGRHGPAAAASTQHPAPPHHT----GTQWQPVDPGRAARP 211
+G AGL G GP Q P P G Q P PG P
Sbjct: 509 DKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLP 558
Score = 29.6 bits (65), Expect = 2.0
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G G P GP G+ D PG P A G +G+ P G GPA
Sbjct: 755 PTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM-TGFPGAAGRTGPPGPSGISGPPGPPGPA 813
Query: 183 AAASTQHP----APPHHTGTQWQPVDPGRA 208
+ P P TG PG A
Sbjct: 814 GKEGLRGPRGDQGPVGRTGEVGAVGPPGFA 843
Score = 28.9 bits (63), Expect = 3.4
Identities = 26/80 (32%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 127 QGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAAS 186
QG PG P GP G P AG T G AG+ P G GPA
Sbjct: 1041 QGAPGSVGPAGPRGPAG-----PSGPAGKDGRTG--HPGTVGPAGIRGPQGHQGPAGPPG 1093
Query: 187 TQHPAPPHHTGTQWQPVDPG 206
P PP G D G
Sbjct: 1094 P--PGPPGPPGVSGGGYDFG 1111
Score = 28.5 bits (62), Expect = 4.4
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 30/85 (35%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ P G G P+ GP G P + + G P G GPA
Sbjct: 98 PRGPPGAAGAPGPQGFQGPAGEPGEPGQTG----------------------PAGARGPA 135
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGR 207
PP G P PGR
Sbjct: 136 --------GPPGKAGEDGHPGKPGR 152
Score = 28.5 bits (62), Expect = 4.4
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRGA-------- 170
P P G G + PR GPVG ++ G AG++ P+ G G
Sbjct: 809 PPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Query: 171 -----GLHRPHGRHG-PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
GL G G P A + P P G PG P
Sbjct: 869 APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Score = 27.7 bits (60), Expect = 7.5
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG-AGLHRPHGRHGPAAAA 185
G PG PR GPVG G G+ P G +G G P G GP+
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEE 378
Query: 186 STQHPAPPHHTGTQWQPVDPGRAARP 211
+ P G+ P PG P
Sbjct: 379 GKR--GPNGEAGSAGPPGPPGLRGSP 402
Score = 27.3 bits (59), Expect = 9.8
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 23/91 (25%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-------AGLHRP 175
P P G G++ P +G G P P L G+ RG AG+ P
Sbjct: 371 PPGPSGEEGKRGPNGEAGSAGPPG-----------PPGLRGSPGSRGLPGADGRAGVMGP 419
Query: 176 HGRHGPAAAASTQHPAPPHHTGTQWQPVDPG 206
G G + A + P G +P +PG
Sbjct: 420 PGSRGASGPAGVRGP-----NGDAGRPGEPG 445
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.1 bits (87), Expect = 0.006
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPG-------AGDQLPTALWGAGRQR---GAGLHRP 175
P+G PG + PR GPVG D PG AG Q P+ L G + G GL P
Sbjct: 2163 PEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGP 2222
Query: 176 HGR------HGPAAAASTQ-HPAPPHHTGTQWQPVDPGR 207
G GP+ Q P P G +P PGR
Sbjct: 2223 TGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGR 2261
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 120 IHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGR 178
++CPK +G PG R GP G+P R GA G Q P A +RG P
Sbjct: 1249 VYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGF----PGAD 1304
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P + +P P G + P PG P
Sbjct: 1305 GRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDP 1337
Score = 34.3 bits (77), Expect = 0.080
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 123 PKPP--QGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWG-AGRQRGAGLHRPHGRH 179
P PP G G P+ SG G P + PG G PT G G +GL P G
Sbjct: 2185 PGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP 2244
Query: 180 G-PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G P T P P G + D G P
Sbjct: 2245 GLPGQVGETGKPGAPGRDGASGKDGDRGSPGVP 2277
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPAAAAS 186
G PG + PR G +G D PG P G +RG G G G A
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPG-----PLGEAGEKGERGPPGPAGSRGLPGVAGRPG 1516
Query: 187 TQHP-APPHHTGTQWQPVDPGRAARP 211
+ P PP TG Q + +PGR P
Sbjct: 1517 AKGPEGPPGPTGRQGEKGEPGRPGDP 1542
Score = 32.0 bits (71), Expect = 0.40
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG-AGLHRPHGRHG 180
PK +G PG K R GP G + PG G P G RG G HG G
Sbjct: 2127 PKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPG 2186
Query: 181 PAAAASTQHPAPPH-HTGTQWQPVDPGRAAR 210
P A PA P +G + +P + G R
Sbjct: 2187 PPGAPGLAGPAGPQGPSGLKGEPGETGPPGR 2217
Score = 30.8 bits (68), Expect = 0.89
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG-P 181
P PQG PG + P G G P R G D P A +G AG GR G P
Sbjct: 1753 PPGPQGDPGVRGPAGEKGDRGPPGLDGRSGL-DGKPGAAGPSGPNGAAGKAGDPGRDGLP 1811
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGR 207
P P G +P + G+
Sbjct: 1812 GLRGEQGLPGPSGPPGLPGKPGEDGK 1837
Score = 29.6 bits (65), Expect = 2.0
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 18/106 (16%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDL------PRPGAGDQLPTALWGA----GRQRGAGL 172
P+ P G GR+ + G G+P + P+ GD P GA G + GL
Sbjct: 1520 PEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL 1579
Query: 173 HRPHGRHGPAAAASTQHP-------APPHHTGTQWQPVDPGRAARP 211
P G GP + P PP +G + DPGR P
Sbjct: 1580 VLP-GDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPP 1624
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P+G PG + PR G G P + G G LP GR+ G P G GP
Sbjct: 1333 PRGDPGERGPRGPKGEPGAPGQV-IGGEGPGLP------GRKGDPGPSGPPGPRGPLGDP 1385
Query: 186 STQHPAPPHHTGTQWQPVDPGRAARP 211
+ P T + D G P
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPP 1411
Score = 29.3 bits (64), Expect = 2.6
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG-------AGLHRPHG 177
P G GR P SGP G D RPG G P G ++G GL G
Sbjct: 1596 PIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAG 1655
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A + P G Q P + GR P
Sbjct: 1656 ERGLRGAPGVR--GPVGEKGDQGDPGEDGRNGSP 1687
Score = 28.5 bits (62), Expect = 4.4
Identities = 27/93 (29%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 128 GCPGRKPPRQHSGPVGNP----TDLPRPGAGDQLPTALWG-----AGRQRGAGLHRPHGR 178
G PG P+ GP G P LP P L G G + GL P G
Sbjct: 2281 GLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGE 2340
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A A P P G + P G P
Sbjct: 2341 KGEAGRAG--EPGDPGEDGQKGAPGPKGFKGDP 2371
Score = 27.7 bits (60), Expect = 7.5
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG-PAAAAS 186
G PGR+ GP G P + PGA + L G G GL P G G P
Sbjct: 2428 GPPGREGIPGPLGPPGPPGSVGPPGA-----SGLKGDKGDPGVGLPGPRGERGEPGIRGE 2482
Query: 187 TQHP---------APPHHTGTQWQPVDPGRA 208
P PP G + + D G A
Sbjct: 2483 DGRPGQEGPRGLTGPPGSRGERGEKGDVGSA 2513
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.1 bits (87), Expect = 0.006
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P PP PP Q GP P +P PG G + G + G +P G GP
Sbjct: 167 PTPPSSGVPTTPP-QAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGG--GPG 223
Query: 183 AAASTQHPAPPHHTG 197
+ HP PPH G
Sbjct: 224 LSTPGGHPKPPHRGG 238
Score = 34.3 bits (77), Expect = 0.080
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 123 PKPPQGCPGRKP-PRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P PP PG P P+Q GP G P PG P G G G +P R G
Sbjct: 185 PPPPAAVPGPGPGPKQGPGP-GGPKGGKMPGG----PKPGGGPGLSTPGGHPKPPHRGGG 239
Query: 182 AAAASTQHPAPPHHTGTQWQP 202
QH P H Q P
Sbjct: 240 EPRGGRQHHPPYHQQHHQGPP 260
Score = 29.3 bits (64), Expect = 2.6
Identities = 24/90 (26%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 125 PPQGCPGRKPPRQHSGPVGNP---TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
PPQ P ++PP P P P P P G G G G P P
Sbjct: 73 PPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP 132
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
A T P G P +A P
Sbjct: 133 PATPPTSGAPPGSGPGPTPTPPPAVTSAPP 162
Score = 27.3 bits (59), Expect = 9.8
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWG-------AGRQRGAGLHRP 175
P+P Q PP+ S PV P PG G P + +G G+G P
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSG---P 147
Query: 176 HGRHGPAAAASTQHP-APPHHTGTQWQPVDPGRAARP 211
P A ++ P APP + P P +A P
Sbjct: 148 GPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP 184
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.7 bits (86), Expect = 0.007
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG-AGLHRPHGRHG 180
P+ P G PG P+ G +GNP + G G+ L G G G G G G
Sbjct: 1256 PRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG 1315
Query: 181 PAAAASTQHP-APPHHTGTQWQ------PVDPGRAARP 211
P+ AA P PP G + P DPG P
Sbjct: 1316 PSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEP 1353
Score = 37.4 bits (85), Expect = 0.009
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGA-------GLHR 174
P P G PG + P +GP+G P RPG G P GA ++G GL
Sbjct: 1082 PPGPAGSPGERGPAGAAGPIGIP---GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQG 1138
Query: 175 PHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGR 207
P G GPA PP G + + +PG+
Sbjct: 1139 PVGLPGPAGPV-----GPPGEDGDKGEIGEPGQ 1166
Score = 37.0 bits (84), Expect = 0.012
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 128 GCPGRKPPRQHSGPVGNP----TDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPA 182
G PG K R GP G P D R G+ P L G RG G P G GP
Sbjct: 637 GLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPP 696
Query: 183 AAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
P P + G Q +P PG+ P
Sbjct: 697 GVTGMDGQPGPKGNVGPQGEPGPPGQQGNP 726
Score = 35.4 bits (80), Expect = 0.036
Identities = 35/111 (31%), Positives = 36/111 (32%), Gaps = 29/111 (26%)
Query: 126 PQGCPGRKPPRQHSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPA 182
P G PG + P GP G P P P D LP G QRG G G GP
Sbjct: 941 PAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGPPGPP 996
Query: 183 AAASTQ-------------HPAPPHHTGTQWQP---------VDPGRAARP 211
Q HP PP G Q P DPG A P
Sbjct: 997 GVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLP 1047
Score = 35.4 bits (80), Expect = 0.036
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRG-AGLHRPHG 177
P P+G PG P+ GPVG P D PG AG P G + G G P G
Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG 1381
Query: 178 RHGPAAAASTQHPAPP 193
GP+ + P P
Sbjct: 1382 EPGPSGPPGKRGPPGP 1397
Score = 31.2 bits (69), Expect = 0.68
Identities = 30/101 (29%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGA----------GDQLPTALWGAGRQRG----AG 171
P+G PG PR GP G P PG G+ P G Q+G G
Sbjct: 671 PRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQG 730
Query: 172 LHRPHGRHG-PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
L P G G P P P G P PG+ P
Sbjct: 731 LPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP 771
Score = 31.2 bits (69), Expect = 0.68
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-------AGDQLPTALWGAGRQRG-AGLHR 174
P+ P G G R H GP G P + PG GD P L G G G
Sbjct: 1001 PQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPG 1060
Query: 175 PHGRHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRA 208
G GP A + + PP G P + G A
Sbjct: 1061 DRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPA 1095
Score = 30.8 bits (68), Expect = 0.89
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWG----AGRQRGAGLHRPHGRH 179
K +G PG+ PR GP G PR G++ P + G G G G P G
Sbjct: 897 KGGRGTPGKPGPRGQRGPTG-----PR---GERGPRGITGKPGPKGNSGGDGPAGPPGER 948
Query: 180 GP-AAAASTQHP---APPHHTGTQWQPVDPGR 207
GP T P PP G P PG+
Sbjct: 949 GPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQ 980
Score = 28.5 bits (62), Expect = 4.4
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P+G G + P+ GP G+P L PG G+ GL GR GP
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPPGE----------KGKLGVPGLPGYPGRQGP- 881
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGR 207
S P P G + PG+
Sbjct: 882 -KGSIGFPGFPGANGEKGGRGTPGK 905
Score = 27.7 bits (60), Expect = 7.5
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 23/93 (24%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP-AAA 184
P G PG++ P +GP G + G + AGL P G+ GP
Sbjct: 1385 PSGPPGKRGPPGPAGPEGRQGE----------------KGAKGEAGLEGPPGKTGPIGPQ 1428
Query: 185 ASTQHPAP------PHHTGTQWQPVDPGRAARP 211
+ P P P G Q P PG P
Sbjct: 1429 GAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPP 1461
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP-TDLPRPGAGDQLPT-------ALWGAGRQRG-AGLHRPHGR 178
G G K + +GP G P +PRPG G + L G +RG G+ P G
Sbjct: 325 GRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGL 384
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPG 206
GP AA P PP G + Q D G
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEG 412
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 123 PKPP-----QGCPGRKP---PRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLH 173
P PP G PG K P GP+G P PG G Q P G G GLH
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG---LPGIGVQGPPGPPGIPGPIGQPGLH 839
Query: 174 RPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G G P PP G+ P PG P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPP 877
Score = 32.0 bits (71), Expect = 0.40
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRP-----GAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
G PG P+ SGP GNP P G P G+ G+ P G+ G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+P PP G Q D G P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Score = 31.6 bits (70), Expect = 0.52
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRGAGLHRPHGR 178
PK G PG + GP G P + PG G P L G G P G
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE 228
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVD 204
G P PP Q +P+D
Sbjct: 229 KGEQGLQGP--PGPPGQISEQKRPID 252
Score = 30.4 bits (67), Expect = 1.2
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
K P G PG P G +G P PG Q AG G G GP
Sbjct: 1341 KGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQG 1400
Query: 184 AASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P P DPGR P
Sbjct: 1401 PQGLPGPTGP--------PGDPGRNGLP 1420
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ PQG P GP G P D R G LP GR+ GL G G
Sbjct: 1398 PQGPQGLP---------GPTGPPGDPGRNG----LPGFDGAGGRKGDPGLPGQPGTRG-- 1442
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARPH 212
PP G Q P PG ++ H
Sbjct: 1443 ------LDGPPGPDGLQGPPGPPGTSSVAH 1466
Score = 28.9 bits (63), Expect = 3.4
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G PG + + GP G +P P D P A GL P G GP
Sbjct: 395 PPGPPGFPGERGQKGDEGPPG--ISIPGPPGLDGQPGA---------PGLPGPPGPAGPH 443
Query: 183 AAASTQ--HPAPPHHTGTQWQPVDPG 206
S + P PP G P D G
Sbjct: 444 IPPSDEICEPGPP---GPPGSPGDKG 466
Score = 28.5 bits (62), Expect = 4.4
Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 128 GCPGRK-PPRQHS--GPVGNPTDLPRPGAGDQLPTALWGAGRQRG--------------- 169
G PG K P Q GP G + +PG G+ P L G Q+G
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPG 1220
Query: 170 ----AGLHRPHGRHGPAAAASTQHPA---PPHHTGTQWQPVDPG 206
G H G GP + PA P + G Q P PG
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Score = 27.7 bits (60), Expect = 7.5
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRP---HGRHGPAAA 184
G PG K GP G P L PG +P G Q GL P G G
Sbjct: 890 GFPGTKGEMGMMGPPGPPGPLGIPGRSG-VPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 185 ASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P+ G++ + +PG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
Score = 27.3 bits (59), Expect = 9.8
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP--TDLP-------RPGAGDQLPTALWG----AGRQRGAGL 172
P+G PG + GP GNP LP PG G P G AG G+
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 173 HRPHGRHGPAAAASTQH--PAPPHHTGTQWQPVDPGRAARP 211
P G G + P P G P DPG +P
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP-TDLPRPGAGDQLPT-------ALWGAGRQRG-AGLHRPHGR 178
G G K + +GP G P +PRPG G + L G +RG G+ P G
Sbjct: 325 GRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGL 384
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPG 206
GP AA P PP G + Q D G
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEG 412
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 123 PKPP-----QGCPGRKP---PRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLH 173
P PP G PG K P GP+G P PG G Q P G G GLH
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG---LPGIGVQGPPGPPGIPGPIGQPGLH 839
Query: 174 RPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G G P PP G+ P PG P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPP 877
Score = 32.0 bits (71), Expect = 0.40
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRP-----GAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
G PG P+ SGP GNP P G P G+ G+ P G+ G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+P PP G Q D G P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Score = 31.6 bits (70), Expect = 0.52
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRGAGLHRPHGR 178
PK G PG + GP G P + PG G P L G G P G
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE 228
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVD 204
G P PP Q +P+D
Sbjct: 229 KGEQGLQGP--PGPPGQISEQKRPID 252
Score = 30.4 bits (67), Expect = 1.2
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
K P G PG P G +G P PG Q AG G G GP
Sbjct: 1335 KGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQG 1394
Query: 184 AASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P P DPGR P
Sbjct: 1395 PQGLPGPTGP--------PGDPGRNGLP 1414
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ PQG P GP G P D R G LP GR+ GL G G
Sbjct: 1392 PQGPQGLP---------GPTGPPGDPGRNG----LPGFDGAGGRKGDPGLPGQPGTRG-- 1436
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARPH 212
PP G Q P PG ++ H
Sbjct: 1437 ------LDGPPGPDGLQGPPGPPGTSSVAH 1460
Score = 28.9 bits (63), Expect = 3.4
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G PG + + GP G +P P D P A GL P G GP
Sbjct: 395 PPGPPGFPGERGQKGDEGPPG--ISIPGPPGLDGQPGA---------PGLPGPPGPAGPH 443
Query: 183 AAASTQ--HPAPPHHTGTQWQPVDPG 206
S + P PP G P D G
Sbjct: 444 IPPSDEICEPGPP---GPPGSPGDKG 466
Score = 28.5 bits (62), Expect = 4.4
Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 128 GCPGRK-PPRQHS--GPVGNPTDLPRPGAGDQLPTALWGAGRQRG--------------- 169
G PG K P Q GP G + +PG G+ P L G Q+G
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPG 1220
Query: 170 ----AGLHRPHGRHGPAAAASTQHPA---PPHHTGTQWQPVDPG 206
G H G GP + PA P + G Q P PG
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Score = 27.7 bits (60), Expect = 7.5
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRP---HGRHGPAAA 184
G PG K GP G P L PG +P G Q GL P G G
Sbjct: 890 GFPGTKGEMGMMGPPGPPGPLGIPGRSG-VPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 185 ASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P+ G++ + +PG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
Score = 27.3 bits (59), Expect = 9.8
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP--TDLP-------RPGAGDQLPTALWG----AGRQRGAGL 172
P+G PG + GP GNP LP PG G P G AG G+
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 173 HRPHGRHGPAAAASTQH--PAPPHHTGTQWQPVDPGRAARP 211
P G G + P P G P DPG +P
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP-TDLPRPGAGDQLPT-------ALWGAGRQRG-AGLHRPHGR 178
G G K + +GP G P +PRPG G + L G +RG G+ P G
Sbjct: 325 GRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGL 384
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPG 206
GP AA P PP G + Q D G
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEG 412
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 123 PKPP-----QGCPGRKP---PRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLH 173
P PP G PG K P GP+G P PG G Q P G G GLH
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG---LPGIGVQGPPGPPGIPGPIGQPGLH 839
Query: 174 RPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G G P PP G+ P PG P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPP 877
Score = 32.0 bits (71), Expect = 0.40
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRP-----GAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
G PG P+ SGP GNP P G P G+ G+ P G+ G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+P PP G Q D G P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Score = 31.6 bits (70), Expect = 0.52
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----AGDQLPTALWGAGRQRGAGLHRPHGR 178
PK G PG + GP G P + PG G P L G G P G
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE 228
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVD 204
G P PP Q +P+D
Sbjct: 229 KGEQGLQGP--PGPPGQISEQKRPID 252
Score = 30.4 bits (67), Expect = 1.2
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
K P G PG P G +G P PG Q AG G G GP
Sbjct: 1338 KGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQG 1397
Query: 184 AASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P P DPGR P
Sbjct: 1398 PQGLPGPTGP--------PGDPGRNGLP 1417
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P+ PQG P GP G P D R G LP GR+ GL G G
Sbjct: 1395 PQGPQGLP---------GPTGPPGDPGRNG----LPGFDGAGGRKGDPGLPGQPGTRG-- 1439
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARPH 212
PP G Q P PG ++ H
Sbjct: 1440 ------LDGPPGPDGLQGPPGPPGTSSVAH 1463
Score = 28.9 bits (63), Expect = 3.4
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G PG + + GP G +P P D P A GL P G GP
Sbjct: 395 PPGPPGFPGERGQKGDEGPPG--ISIPGPPGLDGQPGA---------PGLPGPPGPAGPH 443
Query: 183 AAASTQ--HPAPPHHTGTQWQPVDPG 206
S + P PP G P D G
Sbjct: 444 IPPSDEICEPGPP---GPPGSPGDKG 466
Score = 28.9 bits (63), Expect = 3.4
Identities = 31/109 (28%), Positives = 37/109 (33%), Gaps = 25/109 (22%)
Query: 128 GCPGRK-PPRQHS--GPVGNPTDLPRPGAGDQLPTALWGAGRQRG--------------- 169
G PG K P Q GP G + +PG G+ P L G Q+G
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPG 1220
Query: 170 ----AGLHRPHGRHGPAAAASTQHPA---PPHHTGTQWQPVDPGRAARP 211
G H G GP + PA P + G Q P PG P
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLP 1269
Score = 27.7 bits (60), Expect = 7.5
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRP---HGRHGPAAA 184
G PG K GP G P L PG +P G Q GL P G G
Sbjct: 890 GFPGTKGEMGMMGPPGPPGPLGIPGRSG-VPGLKGDDGLQGQPGLPGPTGEKGSKGEPGL 948
Query: 185 ASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P+ G++ + +PG P
Sbjct: 949 PGPPGPMDPNLLGSKGEKGEPGLPGIP 975
Score = 27.3 bits (59), Expect = 9.8
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP--TDLP-------RPGAGDQLPTALWG----AGRQRGAGL 172
P+G PG + GP GNP LP PG G P G AG G+
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 173 HRPHGRHGPAAAASTQH--PAPPHHTGTQWQPVDPGRAARP 211
P G G + P P G P DPG +P
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 37.7 bits (86), Expect = 0.007
Identities = 32/95 (33%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 123 PKPP-----QGCPGRKPPRQHSGPVGNPTDLPRPGAGDQ-----LPTALWGAGRQRGAGL 172
P PP G PG + PR GP GNP PGA Q L G + GL
Sbjct: 636 PGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGL 695
Query: 173 HRPHGRHGPAAAASTQ-HPAPPHHTGTQWQPVDPG 206
G GP + +P P H G Q QP G
Sbjct: 696 PGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEG 730
Score = 30.8 bits (68), Expect = 0.89
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 123 PKPPQGCPGRKPPRQHSGP---VGNPTDLPRPGAGDQL-PTALWGAGRQRGA-GLHRPHG 177
P P+G PG P +GP G P PG QL P G GA GL G
Sbjct: 905 PPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPG 964
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVDPGR 207
R G P P G + +P DPGR
Sbjct: 965 RKG--------FPGRPGLDGVKGEPGDPGR 986
Score = 29.6 bits (65), Expect = 2.0
Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 124 KPPQGCPGRKPPRQHSGPVGN------------------PTDLPRPGAGDQLPTALWGAG 165
K QG PG R GP+G P D+ P GD P + G
Sbjct: 873 KGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPP--GDNGPEGM--KG 928
Query: 166 RQRGAGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+ GL P G+ GP PP G + QP G RP
Sbjct: 929 KPGARGLPGPRGQLGPEGDEGPM--GPPGAPGLEGQPGRKGFPGRP 972
Score = 27.7 bits (60), Expect = 7.5
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPH-GRHGP 181
P +G GR+ PR GP G R G P G Q+G R H G G
Sbjct: 1055 PPGMRGAKGRRGPRGPDGPAGEQGS--RGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGF 1112
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPG 206
P P GT+ P +PG
Sbjct: 1113 PGI-----PGPSGPPGTKGLPGEPG 1132
Score = 27.3 bits (59), Expect = 9.8
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 117 ARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPH 176
+R + P PQG PGR + +G G+ PG +P G + G P
Sbjct: 1079 SRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPG----IPGPSGPPGTKGLPGEPGPQ 1134
Query: 177 GRHGPAAAASTQHPAPPHHTGTQWQPVDPGRA 208
G GP P P G +P PG A
Sbjct: 1135 GPQGPIGPPGEMGPKGP--PGAVGEPGLPGEA 1164
Score = 27.3 bits (59), Expect = 9.8
Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P PP G PG K R GP G P + G AG G+ P G GP
Sbjct: 1275 PGPP-GTPGPKGSRGSLGPTGAPGRMGAQGEPGL-------AGYDGHKGIVGPLGPPGPK 1326
Query: 183 AAASTQ--------HPAPP------HHTGTQWQPVDPG 206
Q P PP G + +P DPG
Sbjct: 1327 GEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPG 1364
Score = 27.3 bits (59), Expect = 9.8
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAA 185
P G PG + P G G P D PG + + G+Q G P G GP +
Sbjct: 1341 PPGPPGDRGPVGDRGDRGEPGDPGYPGQ-EGVQGLRGKPGQQGQPGHPGPRGWPGPKGSK 1399
Query: 186 STQHPAPPHHTGTQWQPVDPGR 207
+ P G Q + PGR
Sbjct: 1400 GAEGP-----KGKQGKAGAPGR 1416
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.4 bits (85), Expect = 0.009
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 126 PQGCPGRKPPRQHSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPA 182
P G PG + P+ GPVG P P P D LP G QRG G G GP
Sbjct: 923 PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGPPGPG 978
Query: 183 AAASTQ-------------HPAPPHHTGTQWQPVDPGR 207
Q HP PP G Q P G+
Sbjct: 979 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGK 1016
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAG--DQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
P+G PG PR GP G P +PG D P G Q G G GP
Sbjct: 653 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 712
Query: 184 AASTQHP-APPHHTGTQWQP 202
Q P PP G Q +P
Sbjct: 713 LPGPQGPIGPPGEKGPQGKP 732
Score = 35.8 bits (81), Expect = 0.028
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P G PG K P GP GNP + P GD P G Q G G + G G
Sbjct: 1298 PPGAAGPPGAKGPPGDDGPKGNPGPVGFP--GDPGPPGEPGPAGQDGVGGDK--GEDGDP 1353
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P PP +G P PG+ P
Sbjct: 1354 G-----QPGPPGPSGEAGPPGPPGKRGPP 1377
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP----TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG--- 180
G PG K R GP G P D R G+ P L G RG L P G G
Sbjct: 619 GLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG--LLGPRGTPGAPG 676
Query: 181 -PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P A P P + G Q +P PG+ P
Sbjct: 677 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 708
Score = 33.5 bits (75), Expect = 0.14
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 36/119 (30%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG------------- 169
P +G PG P+ + GPVG P D P P G+ P G G +G
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGD-PGP-PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1361
Query: 170 ---AGLHRPHGRHGPAAAASTQ-------------HPAPPHHTGTQWQPVDP-GRAARP 211
AG P G+ GP AA + PP TG PV P G A +P
Sbjct: 1362 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPAGKP 1416
Score = 32.7 bits (73), Expect = 0.23
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P P G PG + +GP+G P RPG G P GA ++G P GR G
Sbjct: 1064 PPGPVGSPGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPGEKGP--QGPAGRDGV 1118
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
PA P G+ + D G P
Sbjct: 1119 QGPVGLPGPAGP--AGSPGEDGDKGEIGEP 1146
Score = 32.7 bits (73), Expect = 0.23
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG----AGLHRPHG 177
P+ P G G + P G VG + PG AG+ P G G +G G P G
Sbjct: 1241 PQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPG 1300
Query: 178 RHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
GP A P + G P DPG P
Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1335
Score = 28.1 bits (61), Expect = 5.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQ-LPTALWGAGRQRGAGLHRPHGRHG 180
P P G G + P +GP+G PG G+Q LP A G + G G+ G
Sbjct: 974 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 1033
Query: 181 PA 182
PA
Sbjct: 1034 PA 1035
Score = 28.1 bits (61), Expect = 5.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-------GDQLPTALWGAGRQRGAGLHRP 175
P+ P G G R H GP G P + PGA GD P + +G+ AGL
Sbjct: 983 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI--SGKDGPAGLRGF 1040
Query: 176 HGRHG 180
G G
Sbjct: 1041 PGERG 1045
Score = 27.7 bits (60), Expect = 7.5
Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL--------PTALWGAGRQRGAGLHRPHG 177
P G PG PR GP G PG+ + P G AG+ P G
Sbjct: 1229 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1288
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A A P G + P D G P
Sbjct: 1289 ERGEKGEAGPPGAAGP--PGAKGPPGDDGPKGNP 1320
Score = 27.3 bits (59), Expect = 9.8
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA--GDQLPTALWGAGRQRGAGLHRPHGRHG 180
P+ P+G G PP GP G P RPGA G +P G + GL G G
Sbjct: 572 PQGPRGVQG--PP----GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG 625
Query: 181 PAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
Q P PP G + + + G P
Sbjct: 626 HRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 657
Score = 27.3 bits (59), Expect = 9.8
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 30/111 (27%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL-----------------------PTALW 162
P+G G + P+ +GP G+P + G +L P A
Sbjct: 818 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 877
Query: 163 GAGRQRGAGLHRPHGRHGP-------AAAASTQHPAPPHHTGTQWQPVDPG 206
G + AG P G+ GP A T P P +G P PG
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 928
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.4 bits (85), Expect = 0.009
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 126 PQGCPGRKPPRQHSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPA 182
P G PG + P+ GPVG P P P D LP G QRG G G GP
Sbjct: 872 PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGPPGPG 927
Query: 183 AAASTQ-------------HPAPPHHTGTQWQPVDPGR 207
Q HP PP G Q P G+
Sbjct: 928 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGK 965
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAG--DQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
P+G PG PR GP G P +PG D P G Q G G GP
Sbjct: 602 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 661
Query: 184 AASTQHP-APPHHTGTQWQP 202
Q P PP G Q +P
Sbjct: 662 LPGPQGPIGPPGEKGPQGKP 681
Score = 35.8 bits (81), Expect = 0.028
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P G PG K P GP GNP + P GD P G Q G G + G G
Sbjct: 1247 PPGAAGPPGAKGPPGDDGPKGNPGPVGFP--GDPGPPGEPGPAGQDGVGGDK--GEDGDP 1302
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P PP +G P PG+ P
Sbjct: 1303 G-----QPGPPGPSGEAGPPGPPGKRGPP 1326
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP----TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG--- 180
G PG K R GP G P D R G+ P L G RG L P G G
Sbjct: 568 GLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG--LLGPRGTPGAPG 625
Query: 181 -PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P A P P + G Q +P PG+ P
Sbjct: 626 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 657
Score = 33.5 bits (75), Expect = 0.14
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 36/119 (30%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG------------- 169
P +G PG P+ + GPVG P D P P G+ P G G +G
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGD-PGP-PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1310
Query: 170 ---AGLHRPHGRHGPAAAASTQ-------------HPAPPHHTGTQWQPVDP-GRAARP 211
AG P G+ GP AA + PP TG PV P G A +P
Sbjct: 1311 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPAGKP 1365
Score = 32.7 bits (73), Expect = 0.23
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P P G PG + +GP+G P RPG G P GA ++G P GR G
Sbjct: 1013 PPGPVGSPGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPGEKGP--QGPAGRDGV 1067
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
PA P G+ + D G P
Sbjct: 1068 QGPVGLPGPAGP--AGSPGEDGDKGEIGEP 1095
Score = 32.7 bits (73), Expect = 0.23
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG----AGLHRPHG 177
P+ P G G + P G VG + PG AG+ P G G +G G P G
Sbjct: 1190 PQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPG 1249
Query: 178 RHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
GP A P + G P DPG P
Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1284
Score = 28.1 bits (61), Expect = 5.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQ-LPTALWGAGRQRGAGLHRPHGRHG 180
P P G G + P +GP+G PG G+Q LP A G + G G+ G
Sbjct: 923 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 982
Query: 181 PA 182
PA
Sbjct: 983 PA 984
Score = 28.1 bits (61), Expect = 5.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-------GDQLPTALWGAGRQRGAGLHRP 175
P+ P G G R H GP G P + PGA GD P + +G+ AGL
Sbjct: 932 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI--SGKDGPAGLRGF 989
Query: 176 HGRHG 180
G G
Sbjct: 990 PGERG 994
Score = 27.7 bits (60), Expect = 7.5
Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL--------PTALWGAGRQRGAGLHRPHG 177
P G PG PR GP G PG+ + P G AG+ P G
Sbjct: 1178 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1237
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A A P G + P D G P
Sbjct: 1238 ERGEKGEAGPPGAAGP--PGAKGPPGDDGPKGNP 1269
Score = 27.3 bits (59), Expect = 9.8
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA--GDQLPTALWGAGRQRGAGLHRPHGRHG 180
P+ P+G G PP GP G P RPGA G +P G + GL G G
Sbjct: 521 PQGPRGVQG--PP----GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG 574
Query: 181 PAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
Q P PP G + + + G P
Sbjct: 575 HRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 606
Score = 27.3 bits (59), Expect = 9.8
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 30/111 (27%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL-----------------------PTALW 162
P+G G + P+ +GP G+P + G +L P A
Sbjct: 767 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 826
Query: 163 GAGRQRGAGLHRPHGRHGP-------AAAASTQHPAPPHHTGTQWQPVDPG 206
G + AG P G+ GP A T P P +G P PG
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 877
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.4 bits (85), Expect = 0.009
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 126 PQGCPGRKPPRQHSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRHGPA 182
P G PG + P+ GPVG P P P D LP G QRG G G GP
Sbjct: 911 PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP----GHPGQRGETGFQGKTGPPGPG 966
Query: 183 AAASTQ-------------HPAPPHHTGTQWQPVDPGR 207
Q HP PP G Q P G+
Sbjct: 967 GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGK 1004
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAG--DQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
P+G PG PR GP G P +PG D P G Q G G GP
Sbjct: 641 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 700
Query: 184 AASTQHP-APPHHTGTQWQP 202
Q P PP G Q +P
Sbjct: 701 LPGPQGPIGPPGEKGPQGKP 720
Score = 35.8 bits (81), Expect = 0.028
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P G PG K P GP GNP + P GD P G Q G G + G G
Sbjct: 1286 PPGAAGPPGAKGPPGDDGPKGNPGPVGFP--GDPGPPGEPGPAGQDGVGGDK--GEDGDP 1341
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P PP +G P PG+ P
Sbjct: 1342 G-----QPGPPGPSGEAGPPGPPGKRGPP 1365
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 128 GCPGRKPPRQHSGPVGNP----TDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG--- 180
G PG K R GP G P D R G+ P L G RG L P G G
Sbjct: 607 GLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRG--LLGPRGTPGAPG 664
Query: 181 -PAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
P A P P + G Q +P PG+ P
Sbjct: 665 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 696
Score = 33.5 bits (75), Expect = 0.14
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 36/119 (30%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG------------- 169
P +G PG P+ + GPVG P D P P G+ P G G +G
Sbjct: 1292 PPGAKGPPGDDGPKGNPGPVGFPGD-PGP-PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1349
Query: 170 ---AGLHRPHGRHGPAAAASTQ-------------HPAPPHHTGTQWQPVDP-GRAARP 211
AG P G+ GP AA + PP TG PV P G A +P
Sbjct: 1350 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----PVGPQGPAGKP 1404
Score = 32.7 bits (73), Expect = 0.23
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P P G PG + +GP+G P RPG G P GA ++G P GR G
Sbjct: 1052 PPGPVGSPGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPGEKGP--QGPAGRDGV 1106
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
PA P G+ + D G P
Sbjct: 1107 QGPVGLPGPAGP--AGSPGEDGDKGEIGEP 1134
Score = 32.7 bits (73), Expect = 0.23
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRG----AGLHRPHG 177
P+ P G G + P G VG + PG AG+ P G G +G G P G
Sbjct: 1229 PQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPG 1288
Query: 178 RHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
GP A P + G P DPG P
Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1323
Score = 28.1 bits (61), Expect = 5.7
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQ-LPTALWGAGRQRGAGLHRPHGRHG 180
P P G G + P +GP+G PG G+Q LP A G + G G+ G
Sbjct: 962 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 1021
Query: 181 PA 182
PA
Sbjct: 1022 PA 1023
Score = 28.1 bits (61), Expect = 5.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-------GDQLPTALWGAGRQRGAGLHRP 175
P+ P G G R H GP G P + PGA GD P + +G+ AGL
Sbjct: 971 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI--SGKDGPAGLRGF 1028
Query: 176 HGRHG 180
G G
Sbjct: 1029 PGERG 1033
Score = 27.7 bits (60), Expect = 7.5
Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL--------PTALWGAGRQRGAGLHRPHG 177
P G PG PR GP G PG+ + P G AG+ P G
Sbjct: 1217 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1276
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G A A P G + P D G P
Sbjct: 1277 ERGEKGEAGPPGAAGP--PGAKGPPGDDGPKGNP 1308
Score = 27.3 bits (59), Expect = 9.8
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA--GDQLPTALWGAGRQRGAGLHRPHGRHG 180
P+ P+G G PP GP G P RPGA G +P G + GL G G
Sbjct: 560 PQGPRGVQG--PP----GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG 613
Query: 181 PAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
Q P PP G + + + G P
Sbjct: 614 HRGERGPQGPPGPPGDDGMRGEDGEIGPRGLP 645
Score = 27.3 bits (59), Expect = 9.8
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 30/111 (27%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQL-----------------------PTALW 162
P+G G + P+ +GP G+P + G +L P A
Sbjct: 806 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 865
Query: 163 GAGRQRGAGLHRPHGRHGP-------AAAASTQHPAPPHHTGTQWQPVDPG 206
G + AG P G+ GP A T P P +G P PG
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG 916
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 37.4 bits (85), Expect = 0.009
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 121 HCPKPPQGCPGRKPPR---QHSGPVGNP--TDLPRPGAGDQLPTALWGAGRQRGAGLHRP 175
H P PP G P R PP+ Q GP +P + P P G++ +A G+ +G
Sbjct: 132 HRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEG 191
Query: 176 HGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+ GP Q P P Q Q G+ P
Sbjct: 192 NKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGP 227
Score = 33.9 bits (76), Expect = 0.10
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 123 PKPPQGCPGRKPPR---QHSGPVGNP--TDLPRPGAGDQLPTALWGAGR------QRGAG 171
P PP G P +PP+ Q GP +P + P P G+Q G+ Q G
Sbjct: 71 PPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQ 130
Query: 172 LHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
HRP P + P P +Q P PG+ P
Sbjct: 131 SHRP-----PPPPGKPERPPPQGGNQSQGPPPHPGKPEGP 165
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P PP G P PP+ + G P P PG + P G + +G P
Sbjct: 50 PPPPPGKPQGPPPQGGNQSQGPP---PPPGKPEGRPPQ--GGNQSQGP----------PP 94
Query: 183 AAASTQHPAPPHHTGTQWQPVDPGRAARP 211
+ P P +Q P PG+ RP
Sbjct: 95 HPGKPERPPPQGGNQSQGTPPPPGKPERP 123
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 37.0 bits (84), Expect = 0.012
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 106 DPITHDLIISLARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAG 165
DP+ D + +L I P PP G P PP P+ P P PG G P G G
Sbjct: 301 DPLVVDEV-ALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPG---PGPGPGPG 356
Query: 166 RQRGAGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVD-PGRAARPH 212
L P G P + P PP + D PG +A P+
Sbjct: 357 PGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPN 404
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
[Homo sapiens]
Length = 1233
Score = 36.6 bits (83), Expect = 0.016
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 162 WGAGRQRGAGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAA 209
WG GR+ P R GP+ T P PP + T W P D GRAA
Sbjct: 923 WGGGRRAPPPSPCPTPRSGPSPCLPTPDP-PPEPSPTGWGPPDGGRAA 969
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGA-GLHRPHGRHG 180
PK G PG+ R +GP+G P PG G+ P+ G RGA G G G
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG 809
Query: 181 PAAAASTQHPAPPHHTGTQWQPVDPG 206
PA A P G + +P D G
Sbjct: 810 PAGFAGP--PGADGQPGAKGEPGDAG 833
Score = 35.8 bits (81), Expect = 0.028
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAAAAST 187
G PG K R +GP G P PGA P + AG+ G P G GP
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGA----PGPVGPAGKSGDRGETGPAGPAGPVGPVGA 1083
Query: 188 QHPAPP 193
+ PA P
Sbjct: 1084 RGPAGP 1089
Score = 34.3 bits (77), Expect = 0.080
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
PK P G G P +GP G+P + RPG LP A G G P G+ GP
Sbjct: 504 PKGPAGERGSPGP---AGPKGSPGEAGRPGEAG-LPGA---KGLTGSPGSPGPDGKTGPP 556
Query: 183 AAASTQ-HPAPPHHTGTQWQ------PVDPGRAARP 211
A P PP G + Q P G A P
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592
Score = 34.3 bits (77), Expect = 0.080
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 123 PKPP-----QGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHG 177
P PP G G P+ +G G + PG P A+ AG+ AG P G
Sbjct: 568 PGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP----PGAVGPAGKDGEAGAQGPPG 623
Query: 178 RHGPAAAASTQHPA-PPHHTGTQWQPVDPGRAARP 211
GPA Q PA P G PG A +P
Sbjct: 624 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP 658
Score = 33.1 bits (74), Expect = 0.18
Identities = 31/112 (27%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG----------------AGDQLPTALWG--- 163
PK G PG GP G P + RPG AG PT G
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG 344
Query: 164 ----AGRQRGAGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G + AG P G GP P PP G +PG +P
Sbjct: 345 FPGAVGAKGEAGPQGPRGSEGPQGVRG--EPGPPGPAGAAGPAGNPGADGQP 394
Score = 32.7 bits (73), Expect = 0.23
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRHGP 181
P+ +G PG P +GP GNP +PGA G + GA GA P G GP
Sbjct: 366 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGA--RGPSGPQGP 423
Query: 182 AAAASTQHPAPPHHTGTQWQPVDPG 206
PP G +P PG
Sbjct: 424 G--------GPPGPKGNSGEPGAPG 440
Score = 32.7 bits (73), Expect = 0.23
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G G K PR +GP G P ++ PG G ++G+ G GPA
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP--------GPAGEKGS-----PGADGPA 943
Query: 183 AAASTQHP 190
A T P
Sbjct: 944 GAPGTPGP 951
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG-PAAA 184
P G PG++ P SG G P + PG L +GR+ G GR G P A
Sbjct: 978 PSGEPGKQGPSGASGERGPPGPMGPPG----LAGPPGESGREGAPGAEGSPGRDGSPGAK 1033
Query: 185 ASTQHPAPPHHTGTQWQPVDPG 206
P G P PG
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPG 1055
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPA 182
P P G PG + P SGP G PR P + G+ GL P G GP
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAG-----PRGP-----PGSAGAPGKDGLNGLPGPIGPPGPR 1168
Query: 183 AAASTQHP-APPHHTGTQWQPVDP 205
P PP G P P
Sbjct: 1169 GRTGDAGPVGPPGPPGPPGPPGPP 1192
Score = 28.9 bits (63), Expect = 3.4
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDL--PRPGAGDQLP--TALWGAGRQRG-AGLHRPHG 177
P+ P G PG+ +G G P + P P LP L G RG +GL G
Sbjct: 219 PRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278
Query: 178 RHGPAAAASTQHPAPPHHTGTQWQPVD---PGRAARP 211
GPA P P G Q PG RP
Sbjct: 279 DAGPAGPKG--EPGSPGENGAPGQMGPRGLPGERGRP 313
Score = 28.1 bits (61), Expect = 5.7
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRG-AGLHRPHGRHG 180
P PQG G P+ +SG G P GA G+ P + G G G G G
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476
Query: 181 PAAAASTQHPAPPHHTG 197
P T P PP G
Sbjct: 477 P-----TGLPGPPGERG 488
Score = 28.1 bits (61), Expect = 5.7
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 30/115 (26%)
Query: 124 KPPQGCPGRKPPRQHSGPVGN---------------PTDLPRPGAGDQL----------- 157
K G PG P GP+GN P PGA ++
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 158 PTALWGAGRQRGAGLHRPHGRHGPAA-AASTQHPAPPHHTGTQWQPVDPGRAARP 211
P AG++ G G P G GPA P PP G + P G A P
Sbjct: 895 PGPPGPAGKEGGKG---PRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAP 946
Score = 27.3 bits (59), Expect = 9.8
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 126 PQGCPGRKPPRQHSGPVGNPTDLPRPG----------------AGDQLPTALWGAGRQRG 169
P+G G + PR +GP G +PG G+ P +G +
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 170 AGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G+ P G GP+ P PP G Q PG P
Sbjct: 173 GGISVP-GPMGPSGPRGL--PGPPGAPGPQGFQGPPGEPGEP 211
Score = 27.3 bits (59), Expect = 9.8
Identities = 29/113 (25%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-------------------AGDQLPTALWG 163
P+ G PG + +G G P PG GD P G
Sbjct: 696 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 755
Query: 164 A-GRQRGAGLHRPHGRHGPAAAASTQHPA----PPHHTGTQWQPVDPGRAARP 211
+ G+ GL P G GPA A + + P TG + P D G P
Sbjct: 756 SPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPP 808
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 36.2 bits (82), Expect = 0.021
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 109 THDLIISLARYIHCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQR 168
+H + S + C G PGR GP G D PGA Q AG
Sbjct: 27 SHRTMPSACTLVMCSSVESGLPGRDGRDGREGPRGEKGDPGLPGAAGQ-------AGMPG 79
Query: 169 GAGLHRPHGRHGPAAAASTQHPAPPHHTGTQWQPVDPG 206
AG P G +G S P P TG P PG
Sbjct: 80 QAGPVGPKGDNG-----SVGEPGPKGDTGPSGPPGPPG 112
Score = 27.7 bits (60), Expect = 7.5
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
PK G G P+ +GP G P PG AG + P G+Q G P G+ GP
Sbjct: 86 PKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGP-----LGKQGNIG---PQGKPGP 137
Query: 182 AAAA 185
A
Sbjct: 138 KGEA 141
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 35.8 bits (81), Expect = 0.028
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-------AGLHRP 175
P P+G G P+ + GPVG P D PG G P GA RG G P
Sbjct: 1164 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG--PRGQDGAKGDRGEDGEPGQPGSPGP 1221
Query: 176 HGRHGPAAAASTQHPA-PPHHTGTQ---WQPVDPGRAARP 211
G +GP + PA P G Q DPG P
Sbjct: 1222 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1261
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP----------TDLPRPGAGDQLPTALWGAGRQRGA----G 171
P+G PG PR GP G P D P+ G P G Q+G G
Sbjct: 513 PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG 572
Query: 172 LHRPHGRHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
L P G GP Q P P G+ P PG+ P
Sbjct: 573 LPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 613
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG 180
H P +G PG + P GP G P + G P G Q G P G G
Sbjct: 784 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQRGEVGFQGKTGPPGPPGVVG 842
Query: 181 PAAAASTQ-------HPAPPHHTGTQWQPVDPGR 207
P AA HP PP G Q P G+
Sbjct: 843 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGK 876
Score = 33.1 bits (74), Expect = 0.18
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLHRPHGRHG-PAAAA 185
G PG K P GP GNP + P GD P G Q GA G G G P +
Sbjct: 1163 GPPGPKGPTGDDGPKGNPGPVGFP--GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPG 1220
Query: 186 STQHPAPPHHTGTQWQPVDPGRAAR 210
T PP G + PG R
Sbjct: 1221 PTGENGPPGPLGKRGPAGSPGSEGR 1245
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA----GLHRPHGR 178
P P G PG + GP+G P RPG P GA ++G G P GR
Sbjct: 924 PPGPAGSPGERGAAGSGGPIGPP---GRPG-----PQGPPGAAGEKGVPGEKGPIGPTGR 975
Query: 179 HGPAAAASTQHPAPP----HHTGTQWQPVDPGR 207
G PA P G + + DPG+
Sbjct: 976 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 1008
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 126 PQGCPGRKPPRQ---HSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRH 179
PQG PG+K SGP+G P LP P AG + G G +G G+ P G
Sbjct: 1350 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGPPGHP 1408
Query: 180 GP 181
GP
Sbjct: 1409 GP 1410
Score = 27.3 bits (59), Expect = 9.8
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRH 179
H K PQG PG GP G+P PG G+Q P +G Q G P G
Sbjct: 583 HGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGP-----SGPQGPLGYPGPRGVK 637
Query: 180 G 180
G
Sbjct: 638 G 638
Score = 27.3 bits (59), Expect = 9.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
G PG+ P +GP G P P LP ++ GR G P G GP
Sbjct: 1259 GAPGKTGPVGPAGPAGK----PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1308
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 35.8 bits (81), Expect = 0.028
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-------AGLHRP 175
P P+G G P+ + GPVG P D PG G P GA RG G P
Sbjct: 1143 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG--PRGQDGAKGDRGEDGEPGQPGSPGP 1200
Query: 176 HGRHGPAAAASTQHPA-PPHHTGTQ---WQPVDPGRAARP 211
G +GP + PA P G Q DPG P
Sbjct: 1201 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1240
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP----------TDLPRPGAGDQLPTALWGAGRQRGA----G 171
P+G PG PR GP G P D P+ G P G Q+G G
Sbjct: 492 PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG 551
Query: 172 LHRPHGRHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
L P G GP Q P P G+ P PG+ P
Sbjct: 552 LPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 592
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG 180
H P +G PG + P GP G P + G P G Q G P G G
Sbjct: 763 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQRGEVGFQGKTGPPGPPGVVG 821
Query: 181 PAAAASTQ-------HPAPPHHTGTQWQPVDPGR 207
P AA HP PP G Q P G+
Sbjct: 822 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGK 855
Score = 33.1 bits (74), Expect = 0.18
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLHRPHGRHG-PAAAA 185
G PG K P GP GNP + P GD P G Q GA G G G P +
Sbjct: 1142 GPPGPKGPTGDDGPKGNPGPVGFP--GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPG 1199
Query: 186 STQHPAPPHHTGTQWQPVDPGRAAR 210
T PP G + PG R
Sbjct: 1200 PTGENGPPGPLGKRGPAGSPGSEGR 1224
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA----GLHRPHGR 178
P P G PG + GP+G P RPG P GA ++G G P GR
Sbjct: 903 PPGPAGSPGERGAAGSGGPIGPP---GRPG-----PQGPPGAAGEKGVPGEKGPIGPTGR 954
Query: 179 HGPAAAASTQHPAPP----HHTGTQWQPVDPGR 207
G PA P G + + DPG+
Sbjct: 955 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 987
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 126 PQGCPGRKPPRQ---HSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRH 179
PQG PG+K SGP+G P LP P AG + G G +G G+ P G
Sbjct: 1329 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGPPGHP 1387
Query: 180 GP 181
GP
Sbjct: 1388 GP 1389
Score = 27.3 bits (59), Expect = 9.8
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRH 179
H K PQG PG GP G+P PG G+Q P +G Q G P G
Sbjct: 562 HGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGP-----SGPQGPLGYPGPRGVK 616
Query: 180 G 180
G
Sbjct: 617 G 617
Score = 27.3 bits (59), Expect = 9.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
G PG+ P +GP G P P LP ++ GR G P G GP
Sbjct: 1238 GAPGKTGPVGPAGPAGK----PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1287
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 35.8 bits (81), Expect = 0.028
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRG-------AGLHRP 175
P P+G G P+ + GPVG P D PG G P GA RG G P
Sbjct: 1250 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG--PRGQDGAKGDRGEDGEPGQPGSPGP 1307
Query: 176 HGRHGPAAAASTQHPA-PPHHTGTQ---WQPVDPGRAARP 211
G +GP + PA P G Q DPG P
Sbjct: 1308 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAP 1347
Score = 34.7 bits (78), Expect = 0.061
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 126 PQGCPGRKPPRQHSGPVGNP----------TDLPRPGAGDQLPTALWGAGRQRGA----G 171
P+G PG PR GP G P D P+ G P G Q+G G
Sbjct: 599 PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQG 658
Query: 172 LHRPHGRHGPAAAASTQ-HPAPPHHTGTQWQPVDPGRAARP 211
L P G GP Q P P G+ P PG+ P
Sbjct: 659 LPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 699
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHG 180
H P +G PG + P GP G P + G P G Q G P G G
Sbjct: 870 HGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQRGEVGFQGKTGPPGPPGVVG 928
Query: 181 PAAAASTQ-------HPAPPHHTGTQWQPVDPGR 207
P AA HP PP G Q P G+
Sbjct: 929 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGK 962
Score = 33.1 bits (74), Expect = 0.18
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA-GLHRPHGRHG-PAAAA 185
G PG K P GP GNP + P GD P G Q GA G G G P +
Sbjct: 1249 GPPGPKGPTGDDGPKGNPGPVGFP--GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPG 1306
Query: 186 STQHPAPPHHTGTQWQPVDPGRAAR 210
T PP G + PG R
Sbjct: 1307 PTGENGPPGPLGKRGPAGSPGSEGR 1331
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGA----GLHRPHGR 178
P P G PG + GP+G P RPG P GA ++G G P GR
Sbjct: 1010 PPGPAGSPGERGAAGSGGPIGPP---GRPG-----PQGPPGAAGEKGVPGEKGPIGPTGR 1061
Query: 179 HGPAAAASTQHPAPP----HHTGTQWQPVDPGR 207
G PA P G + + DPG+
Sbjct: 1062 DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 1094
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 126 PQGCPGRKPPRQ---HSGPVG--NPTDLPRPGAGDQLPTALWGAGRQRG-AGLHRPHGRH 179
PQG PG+K SGP+G P LP P AG + G G +G G+ P G
Sbjct: 1436 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGP-AGPKGAKGATGPGGPKGEKGVQGPPGHP 1494
Query: 180 GP 181
GP
Sbjct: 1495 GP 1496
Score = 27.3 bits (59), Expect = 9.8
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 121 HCPKPPQGCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRPHGRH 179
H K PQG PG GP G+P PG G+Q P +G Q G P G
Sbjct: 669 HGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGP-----SGPQGPLGYPGPRGVK 723
Query: 180 G 180
G
Sbjct: 724 G 724
Score = 27.3 bits (59), Expect = 9.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGP 181
G PG+ P +GP G P P LP ++ GR G P G GP
Sbjct: 1345 GAPGKTGPVGPAGPAGK----PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1394
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 35.4 bits (80), Expect = 0.036
Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGRHGPAA 183
K +G PG PR GP G P +PG P L G+ G G G
Sbjct: 343 KGERGYPGTPGPRGEPGPKGFPGLPGQPG-----PPGLPVPGQAGAPGFPGERGEKGDRG 397
Query: 184 AASTQHPAPPHHTGTQWQPVDPGRAARP 211
T P P G P PG +P
Sbjct: 398 FPGTSLPGPSGRDGLPGPPGSPGPPGQP 425
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 124 KPPQGCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGA-----GRQRGAGLHRPHGR 178
K G PG PR G G+ D+ PG + G+ G Q G P G
Sbjct: 905 KGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGE 964
Query: 179 HGPAAAASTQHPAPPHHTGTQWQPVDPGRAARP 211
G T P P G QP PG P
Sbjct: 965 KGSRGDPGT--PGVPGKDGQAGQPGQPGPKGDP 995
Score = 28.5 bits (62), Expect = 4.4
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 123 PKPPQGCPGRKPPRQHSGPVGNPTDLPRPG-AGDQLPTALWGAGRQRGAGL-HRP----- 175
P P G PG + GP+G P PG AG+ P L G G L H P
Sbjct: 116 PPGPPGIPGCNGTKGERGPLGPP---GLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLK 172
Query: 176 --------HGRHGPAAAASTQHP-APPHHTGTQWQPVDPG 206
G GP Q P PP TG P PG
Sbjct: 173 GERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPG 212
Score = 28.5 bits (62), Expect = 4.4
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGA-GDQLPTALWGAGRQRGAGLHRP---HGRHGPAA 183
G PG + R GP G P + PG G P A G Q GL P G G
Sbjct: 773 GPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPG 832
Query: 184 AASTQHPAPPHHTGTQWQPVDPGRAARP 211
P P G Q P G++ P
Sbjct: 833 FPGLDMPGPKGDKGAQGLPGITGQSGLP 860
Score = 28.1 bits (61), Expect = 5.7
Identities = 27/93 (29%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 128 GCPGRKPPRQHSGPVGNPTDLPRPGAGDQLPTALWGAGRQRGAGLHRPHGR------HGP 181
G PG P+ G G LP P + LP + G Q G GR G
Sbjct: 627 GSPGLPGPK---GEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGA 683
Query: 182 AAAASTQHPAPPHHTGTQWQPVD---PGRAARP 211
P PP G P D PG RP
Sbjct: 684 VGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRP 716
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,695,837
Number of Sequences: 37866
Number of extensions: 728448
Number of successful extensions: 5236
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 3876
Number of HSP's gapped (non-prelim): 1401
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.