Guide to the Human Genome
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Name: C22orf36 Sequence: fasta or formatted (315aa) NCBI GI: 134288867
Description:

hypothetical protein LOC388886

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         29           3
 C cysteine            1.9          6           2
 D aspartate           5.7         18           1
 E glutamate           4.4         14           1
 F phenylalanine       1.0          3           1
 G glycine             6.7         21           1
 H histidine           1.9          6           1
 I isoleucine          2.9          9           1
 K lysine              3.5         11           2
 L leucine            17.8         56           3
 M methionine          0.3          1           1
 N asparagine          1.9          6           2
 P proline             6.3         20           1
 Q glutamine           5.4         17           3
 R arginine            9.5         30           3
 S serine              7.6         24           2
 T threonine           6.7         21           2
 V valine              3.8         12           1
 W tryptophan          1.6          5           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388886 
C17orf76              0.395   hypothetical protein LOC388341 isoform 1 
C17orf76              0.110   hypothetical protein LOC388341 isoform 2 
PRAMEF23              0.022   PREDICTED: PRAME family member 23 
KIAA0644              0.022   hypothetical protein LOC9865 
PRAMEF20              0.022   PRAME family member 20 
PRAMEF21              0.022   PRAME family member 21 
LOC645359             0.022   PREDICTED: PRAME family member 
PRAMEF25              0.022   PREDICTED: PRAME family member 25-like 
PRAMEF6               0.022   PRAME family member 6 
PRAMEF5               0.022   PRAME family member 5 
PRAMEF11              0.020   PRAME family member 11 
PRAMEF11              0.020   PREDICTED: PRAME family member 11 
PRAMEF15              0.020   PRAME family member 15 
PRAMEF4               0.020   PRAME family member 4 
PRAMEF9               0.020   PRAME family member 9 
LOC100292655          0.018   PREDICTED: similar to armadillo repeat containing, ...
LRRC32                0.017   leucine rich repeat containing 32 precursor 
LRRC32                0.017   leucine rich repeat containing 32 precursor 
NLRP6                 0.017   NLR family, pyrin domain containing 6 
PRAMEF7               0.015   PRAME family member 7 
LOC729516             0.015   PREDICTED: similar to Putative PRAME family member ...
PRAMEF12              0.015   PRAME family member 12 
PRAMEF8               0.015   PRAME family member 8 
LOC100130274          0.013   coiled-coil domain containing 121-like 
FLII                  0.013   flightless I homolog 
PRAME                 0.013   preferentially expressed antigen in melanoma 
PRAME                 0.013   preferentially expressed antigen in melanoma 
PRAME                 0.013   preferentially expressed antigen in melanoma 
PRAME                 0.013   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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