Guide to the Human Genome
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Name: GRIN2C Sequence: fasta or formatted (1233aa) NCBI GI: 55770854
Description:

N-methyl-D-aspartate receptor subunit 2C precursor

Referenced in:

Glutamate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2        113           2
 C cysteine            2.1         26           2
 D aspartate           3.6         44           1
 E glutamate           4.4         54           2
 F phenylalanine       4.1         51           2
 G glycine             8.8        108           3
 H histidine           2.8         35           1
 I isoleucine          3.1         38           1
 K lysine              2.5         31           2
 L leucine            10.1        124           3
 M methionine          2.1         26           2
 N asparagine          2.3         28           2
 P proline             8.3        102           3
 Q glutamine           3.7         46           2
 R arginine            6.7         82           2
 S serine              8.5        105           3
 T threonine           4.9         61           2
 V valine              8.2        101           2
 W tryptophan          2.4         29           1
 Y tyrosine            2.4         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-methyl-D-aspartate receptor subunit 2C precursor [... 
GRIN2D                0.431   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN2A                0.397   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.397   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.397   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN2B                0.389   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN3B                0.101   glutamate receptor, ionotropic, N-methyl-D-aspartate...
GRIN3A                0.101   glutamate receptor, ionotropic, N-methyl-D-aspartat...
GRIN1                 0.099   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.098   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.098   NMDA receptor 1 isoform NR1-2 precursor 
GRIA1                 0.068   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIA4                 0.067   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA1                 0.067   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRIA4                 0.067   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA2                 0.063   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA2                 0.063   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRIA2                 0.063   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIK4                 0.060   glutamate receptor KA1 precursor 
GRIK1                 0.059   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIA3                 0.059   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA3                 0.059   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIK5                 0.059   glutamate receptor KA2 precursor 
GRIK3                 0.059   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK2                 0.058   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIK1                 0.058   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK2                 0.058   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRID2                 0.053   glutamate receptor, ionotropic, delta 2 
GRID1                 0.049   glutamate receptor, ionotropic, delta 1 precursor [H...
FMN1                  0.014   formin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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