Guide to the Human Genome
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Name: PRB4 Sequence: fasta or formatted (247aa) NCBI GI: 37537692
Description:

proline-rich protein BstNI subfamily 4 precursor

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          8           1
 C cysteine            0.0          0           0
 D aspartate           0.4          1           1
 E glutamate           4.9         12           2
 F phenylalanine       0.4          1           1
 G glycine            16.6         41           2
 H histidine           1.2          3           1
 I isoleucine          0.8          2           1
 K lysine              4.9         12           1
 L leucine             3.6          9           2
 M methionine          0.4          1           1
 N asparagine          3.6          9           1
 P proline            33.2         82           5
 Q glutamine          13.8         34           2
 R arginine            4.9         12           2
 S serine              6.9         17           3
 T threonine           0.4          1           1
 V valine              0.8          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich protein BstNI subfamily 4 precursor [Ho... 
PRB3                  0.770   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.677   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.677   proline-rich protein BstNI subfamily 2 
PRB1                  0.543   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB1                  0.454   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRH1                  0.273   proline-rich protein HaeIII subfamily 1 
PRH2                  0.273   proline-rich protein HaeIII subfamily 2 
PRH2                  0.273   proline-rich protein HaeIII subfamily 2 
SYN1                  0.175   synapsin I isoform Ib 
SYN1                  0.171   synapsin I isoform Ia 
CPSF6                 0.157   cleavage and polyadenylation specific factor 6, 68 ...
FMN2                  0.154   formin 2 
WDR33                 0.152   WD repeat domain 33 isoform 1 
DIAPH1                0.152   diaphanous 1 isoform 2 
DIAPH1                0.152   diaphanous 1 isoform 1 
BRD4                  0.150   bromodomain-containing protein 4 isoform long 
SF3B4                 0.150   splicing factor 3b, subunit 4 
SFPQ                  0.150   splicing factor proline/glutamine rich (polypyrimidin...
SF1                   0.148   splicing factor 1 isoform 1 
COL1A1                0.146   alpha 1 type I collagen preproprotein 
COL5A1                0.146   alpha 1 type V collagen preproprotein 
WIPF1                 0.142   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.142   WAS/WASL interacting protein family, member 1 
MLL2                  0.142   myeloid/lymphoid or mixed-lineage leukemia 2 
COL3A1                0.140   collagen type III alpha 1 preproprotein 
SF1                   0.140   splicing factor 1 isoform 2 
CCNK                  0.140   cyclin K isoform 1 
SF3A2                 0.139   splicing factor 3a, subunit 2 
COL11A2               0.137   collagen, type XI, alpha 2 isoform 2 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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