Guide to the Human Genome
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Name: C17orf76 Sequence: fasta or formatted (344aa) NCBI GI: 165932385
Description:

hypothetical protein LOC388341 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {212aa} hypothetical protein LOC388341 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         25           3
 C cysteine            1.2          4           1
 D aspartate           6.1         21           2
 E glutamate           5.8         20           2
 F phenylalanine       1.7          6           1
 G glycine             9.6         33           3
 H histidine           2.9         10           2
 I isoleucine          2.6          9           2
 K lysine              3.5         12           1
 L leucine            14.0         48           3
 M methionine          2.0          7           1
 N asparagine          2.0          7           2
 P proline             7.6         26           2
 Q glutamine           4.4         15           1
 R arginine            9.3         32           2
 S serine              5.8         20           1
 T threonine           6.1         21           2
 V valine              5.5         19           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388341 isoform 1 
C22orf36              0.355   hypothetical protein LOC388886 
C17orf76              0.343   hypothetical protein LOC388341 isoform 2 
PRAME                 0.037   preferentially expressed antigen in melanoma 
PRAME                 0.037   preferentially expressed antigen in melanoma 
PRAME                 0.037   preferentially expressed antigen in melanoma 
PRAME                 0.037   preferentially expressed antigen in melanoma 
PRAME                 0.037   preferentially expressed antigen in melanoma 
LOC645359             0.031   PREDICTED: PRAME family member 
PRAMEF25              0.031   PREDICTED: PRAME family member 25-like 
PRAMEF23              0.031   PREDICTED: PRAME family member 23 
PRAMEF6               0.031   PRAME family member 6 
PRAMEF5               0.031   PRAME family member 5 
PRAMEF11              0.030   PRAME family member 11 
PRAMEF11              0.030   PREDICTED: PRAME family member 11 
PRAMEF15              0.030   PRAME family member 15 
PRAMEF4               0.030   PRAME family member 4 
PRAMEF9               0.030   PRAME family member 9 
PRAMEF20              0.028   PRAME family member 20 
PRAMEF21              0.028   PRAME family member 21 
PRAMEF12              0.025   PRAME family member 12 
NLRP5                 0.018   NACHT, LRR and PYD containing protein 5 
PRAMEF17              0.013   PRAME family member 17 
PRAMEF16              0.013   PRAME family member 16 
NLRC5                 0.013   nucleotide-binding oligomerization domains 27 [Homo...
PRAMEF22              0.012   PRAME family member 22 
PRAMEF3               0.012   PRAME family member 3 
NLRP1                 0.012   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.012   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.012   NLR family, pyrin domain containing 1 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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