Guide to the Human Genome
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Name: SNED1 Sequence: fasta or formatted (1413aa) NCBI GI: 122937283
Description:

6720455I24Rik homolog

Referenced in:

Fibronectin Family
Notch Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9        111           3
 C cysteine            7.6        107           1
 D aspartate           5.1         72           2
 E glutamate           5.2         73           2
 F phenylalanine       3.8         53           2
 G glycine            10.4        147           3
 H histidine           3.6         51           2
 I isoleucine          2.2         31           2
 K lysine              2.5         36           2
 L leucine             6.0         85           2
 M methionine          0.8         12           1
 N asparagine          3.6         51           3
 P proline             7.0         99           3
 Q glutamine           3.0         43           1
 R arginine            7.0         99           2
 S serine              7.6        107           4
 T threonine           6.3         89           3
 V valine              6.6         93           2
 W tryptophan          0.9         13           1
 Y tyrosine            2.9         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   6720455I24Rik homolog 
NOTCH1                0.147   notch1 preproprotein 
NOTCH2                0.140   notch 2 preproprotein 
NOTCH3                0.138   Notch homolog 3 
NOTCH4                0.133   notch4 preproprotein 
JAG1                  0.120   jagged 1 precursor 
JAG2                  0.115   jagged 2 isoform a precursor 
JAG2                  0.110   jagged 2 isoform b precursor 
EYS                   0.105   eyes shut homolog isoform 1 
CRB1                  0.084   crumbs homolog 1 precursor 
TECTA                 0.081   tectorin alpha precursor 
CRB2                  0.076   crumbs homolog 2 
TNXB                  0.069   tenascin XB isoform 1 precursor 
MEGF6                 0.068   EGF-like-domain, multiple 3 
MEGF11                0.068   multiple EGF-like-domains 11 
DNER                  0.064   delta-notch-like EGF repeat-containing transmembran...
DLL4                  0.061   delta-like 4 protein precursor 
TNC                   0.060   tenascin C precursor 
FBN2                  0.060   fibrillin 2 precursor 
DLL1                  0.060   delta-like 1 
LTBP4                 0.058   latent transforming growth factor beta binding prot...
LTBP4                 0.058   latent transforming growth factor beta binding prot...
LTBP4                 0.058   latent transforming growth factor beta binding prot...
MEGF10                0.058   multiple EGF-like-domains 10 
FBN3                  0.057   fibrillin 3 precursor 
SVEP1                 0.057   polydom 
PEAR1                 0.057   platelet endothelial aggregation receptor 1 
FBN1                  0.055   fibrillin 1 precursor 
VWDE                  0.055   von Willebrand factor D and EGF domains 
SLIT3                 0.048   slit homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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