SNED1 2566

Name: SNED1	Sequence: fasta or formatted (1413aa)		NCBI GI: 122937283
Description: 6720455I24Rik homolog		Referenced in: Fibronectin Family Notch Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 111 3 C cysteine 7.6 107 1 D aspartate 5.1 72 2 E glutamate 5.2 73 2 F phenylalanine 3.8 53 2 G glycine 10.4 147 3 H histidine 3.6 51 2 I isoleucine 2.2 31 2 K lysine 2.5 36 2 L leucine 6.0 85 2 M methionine 0.8 12 1 N asparagine 3.6 51 3 P proline 7.0 99 3 Q glutamine 3.0 43 1 R arginine 7.0 99 2 S serine 7.6 107 4 T threonine 6.3 89 3 V valine 6.6 93 2 W tryptophan 0.9 13 1 Y tyrosine 2.9 41 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 6720455I24Rik homolog NOTCH1 0.147 notch1 preproprotein NOTCH2 0.140 notch 2 preproprotein NOTCH3 0.138 Notch homolog 3 NOTCH4 0.133 notch4 preproprotein JAG1 0.120 jagged 1 precursor JAG2 0.115 jagged 2 isoform a precursor JAG2 0.110 jagged 2 isoform b precursor EYS 0.105 eyes shut homolog isoform 1 CRB1 0.084 crumbs homolog 1 precursor TECTA 0.081 tectorin alpha precursor CRB2 0.076 crumbs homolog 2 TNXB 0.069 tenascin XB isoform 1 precursor MEGF6 0.068 EGF-like-domain, multiple 3 MEGF11 0.068 multiple EGF-like-domains 11 DNER 0.064 delta-notch-like EGF repeat-containing transmembran... DLL4 0.061 delta-like 4 protein precursor TNC 0.060 tenascin C precursor FBN2 0.060 fibrillin 2 precursor DLL1 0.060 delta-like 1 LTBP4 0.058 latent transforming growth factor beta binding prot... LTBP4 0.058 latent transforming growth factor beta binding prot... LTBP4 0.058 latent transforming growth factor beta binding prot... MEGF10 0.058 multiple EGF-like-domains 10 FBN3 0.057 fibrillin 3 precursor SVEP1 0.057 polydom PEAR1 0.057 platelet endothelial aggregation receptor 1 FBN1 0.055 fibrillin 1 precursor VWDE 0.055 von Willebrand factor D and EGF domains SLIT3 0.048 slit homolog 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.