Guide to the Human Genome
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Name: CRB1 Sequence: fasta or formatted (1406aa) NCBI GI: 41327708
Description:

crumbs homolog 1 precursor

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         55           2
 C cysteine            8.7        123           1
 D aspartate           5.3         74           2
 E glutamate           5.5         77           2
 F phenylalanine       4.5         63           2
 G glycine             8.5        119           2
 H histidine           2.5         35           1
 I isoleucine          5.3         74           2
 K lysine              3.3         46           1
 L leucine             8.5        119           3
 M methionine          1.1         15           1
 N asparagine          7.6        107           2
 P proline             4.5         63           3
 Q glutamine           4.4         62           2
 R arginine            2.8         40           1
 S serine              8.7        123           2
 T threonine           6.0         84           2
 V valine              4.8         67           2
 W tryptophan          1.2         17           1
 Y tyrosine            3.1         43           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crumbs homolog 1 precursor 
CRB2                  0.246   crumbs homolog 2 
NOTCH1                0.118   notch1 preproprotein 
NOTCH2                0.116   notch 2 preproprotein 
NOTCH4                0.109   notch4 preproprotein 
NOTCH3                0.108   Notch homolog 3 
EYS                   0.104   eyes shut homolog isoform 1 
JAG1                  0.103   jagged 1 precursor 
JAG2                  0.097   jagged 2 isoform a precursor 
JAG2                  0.093   jagged 2 isoform b precursor 
SNED1                 0.086   6720455I24Rik homolog 
SVEP1                 0.075   polydom 
DNER                  0.071   delta-notch-like EGF repeat-containing transmembran...
DLL1                  0.070   delta-like 1 
DLL4                  0.069   delta-like 4 protein precursor 
SLIT3                 0.063   slit homolog 3 
SLIT2                 0.061   slit homolog 2 
FAT4                  0.060   FAT tumor suppressor homolog 4 
SLIT1                 0.057   slit homolog 1 
CELSR2                0.056   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR1                0.054   cadherin EGF LAG seven-pass G-type receptor 1 
DLK2                  0.053   EGF-like-domain, multiple 9 
DLK2                  0.053   EGF-like-domain, multiple 9 
DLL3                  0.049   delta-like 3 protein isoform 1 precursor 
DLL3                  0.049   delta-like 3 protein isoform 2 precursor 
CUBN                  0.047   cubilin 
LTBP4                 0.044   latent transforming growth factor beta binding prot...
LTBP4                 0.044   latent transforming growth factor beta binding prot...
LTBP4                 0.044   latent transforming growth factor beta binding prot...
FBN2                  0.044   fibrillin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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